C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily C, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000070425 Trpc2 10090 + 7:102065713-102096864 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000084843 Trpc2-001 102065778-102096334 protein_coding
  ENSMUST00000094129 Trpc2-201 102065713-102096416 protein_coding
  ENSMUST00000123372 Trpc2-002 102065713-102096864 nonsense_mediated_decay
  ENSMUST00000139104 Trpc2-004 102075880-102096326 nonsense_mediated_decay
  ENSMUST00000155078 Trpc2-003 102075876-102096334 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084843ENSMUST00000094129ENSMUST00000123372ENSMUST00000139104
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084843 N/A N/A N/A N/A 0.937±0.10 0.743±0.00 0.453±0.00 1.175±0.00 0.141±0.00 N/A N/A 1.859±0.48 N/A N/A
ENSMUST00000094129 N/A N/A N/A N/A N/A 1.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123372 1.448±0.39 0.877±0.23 1.319±0.32 2.451±0.60 1.380±0.54 1.054±0.33 0.725±0.17 0.800±0.26 0.383±0.13 1.384±0.38 0.534±0.00 2.044±0.48 0.627±0.03 2.187±0.10
ENSMUST00000139104 N/A 1.130±0.00 N/A N/A N/A 0.607±0.04 0.515±0.00 0.584±0.13 N/A N/A N/A 1.553±0.12 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZS CIL_0002ZS_0002 CGP 7:102065511-102096864

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000012 IEA single strand break repair
GO:0000139 IDA Golgi membrane
GO:0002121 IMP inter-male aggressive behavior
GO:0002124 IMP territorial aggressive behavior
GO:0003684 IEA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005516 IDA calmodulin binding
GO:0005635 IDA nuclear envelope
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005886 IDA plasma membrane
GO:0006816 IMP calcium ion transport
GO:0007204 IPI positive regulation of cytosolic calcium ion concentration
GO:0007340 IMP acrosome reaction
GO:0008050 IMP female courtship behavior
GO:0010468 IMP regulation of gene expression
GO:0012505 IDA endomembrane system
GO:0015279 IDA store-operated calcium channel activity
GO:0016021 IEA integral component of membrane
GO:0019236 IMP response to pheromone
GO:0019992 IMP diacylglycerol binding
GO:0032590 IMP dendrite membrane
GO:0048047 IMP mating behavior, sex discrimination
GO:0070588 IEA:IDA calcium ion transmembrane transport
GO:0070679 IDA inositol 1,4,5 trisphosphate binding
GO:1902436 IGI negative regulation of male mating behavior

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003344 trpc2b transient receptor potential cation channel, subfamily C, member 2b protein_coding Danio_rerio
ENSDARG00000039065 si:dkey-93k4.1 si:dkey-93k4.1 protein_coding Danio_rerio

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