C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123372 Trpc2-002 ENSMUSG00000070425 10090 + 7:102065713-102096864 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000123372
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000123372 1.448±0.39 0.877±0.23 1.319±0.32 2.451±0.60 1.380±0.54 1.054±0.33 0.725±0.17 0.800±0.26 0.383±0.13 1.384±0.38 0.534±0.00 2.044±0.48 0.627±0.03 2.187±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZS CIL_0002ZS_0002 CGP 7:102065511-102096864

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000012 IEA single strand break repair
GO:0000139 IDA Golgi membrane
GO:0002121 IMP inter-male aggressive behavior
GO:0002124 IMP territorial aggressive behavior
GO:0003684 IEA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005516 IDA calmodulin binding
GO:0005635 IDA nuclear envelope
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005886 IDA plasma membrane
GO:0006816 IMP calcium ion transport
GO:0007204 IPI positive regulation of cytosolic calcium ion concentration
GO:0007340 IMP acrosome reaction
GO:0008050 IMP female courtship behavior
GO:0010468 IMP regulation of gene expression
GO:0012505 IDA endomembrane system
GO:0015279 IDA store-operated calcium channel activity
GO:0019236 IMP response to pheromone
GO:0019992 IMP diacylglycerol binding
GO:0032590 IMP dendrite membrane
GO:0048047 IMP mating behavior, sex discrimination
GO:0070588 IDA calcium ion transmembrane transport
GO:1902436 IGI negative regulation of male mating behavior

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000451043 TRPC2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 2340
ENST00000526541 TRPC2-002 processed_transcript Homo_sapiens 0 274
ENST00000528184 RP11-849H4.2-004 protein_coding Homo_sapiens 5.04467e-44 182
ENST00000528511 RP11-849H4.2-003 protein_coding Homo_sapiens 0 510
ENST00000529513 RP11-849H4.2-006 protein_coding Homo_sapiens 0 403
ENST00000529844 RP11-849H4.2-001 protein_coding Homo_sapiens 0 405
ENST00000532852 RP11-849H4.2-009 protein_coding Homo_sapiens 0 427
ENST00000533047 RP11-849H4.2-002 protein_coding Homo_sapiens 0 320
ENST00000534704 RP11-849H4.2-008 protein_coding Homo_sapiens 0 296

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