C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: metastasis-associated gene family, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000096240 Mta2-001 ENSMUSG00000071646 10090 + 19:8941875-8952303 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000096240
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000096240 6.609±2.51 11.610±4.84 18.432±5.03 14.324±7.74 9.275±4.94 9.266±4.48 1.080±0.00 6.917±0.00 14.159±7.91 10.907±4.68 8.814±0.99 11.053±3.48 19.823±8.45 4.784±0.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760
CIL_0004IG CIL_0004IG_0002 CGP 19:8929694-8952303

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0000989 IDA transcription factor binding transcription factor activity
GO:0001085 IEA RNA polymerase II transcription factor binding
GO:0001103 IEA RNA polymerase II repressing transcription factor binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004407 IDA histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0006306 IMP DNA methylation
GO:0006323 TAS DNA packaging
GO:0006338 TAS chromatin remodeling
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0016575 IDA histone deacetylation
GO:0016581 IDA NuRD complex
GO:0031492 IEA nucleosomal DNA binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278823 MTA2-001 protein_coding Homo_sapiens 0 3454
ENST00000524902 MTA2-002 protein_coding Homo_sapiens 0 2859
ENST00000526844 MTA2-005 retained_intron Homo_sapiens 0 580
ENST00000527204 MTA2-003 protein_coding Homo_sapiens 0 2723
ENST00000531179 MTA2-007 retained_intron Homo_sapiens 0 431
ENST00000531261 MTA2-006 retained_intron Homo_sapiens 0 287

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