C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spermine synthase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000071708 Sms 10090 - X:157443855-157492287 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000112529 Sms-001 157443855-157492287 protein_coding
  ENSMUST00000123770 Sms-002 157465864-157491372 protein_coding
  ENSMUST00000127089 Sms-003 157458874-157492044 retained_intron
  ENSMUST00000145477 Sms-005 157445696-157492066 nonsense_mediated_decay
  ENSMUST00000146026 Sms-004 157455994-157460861 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112529ENSMUST00000127089ENSMUST00000145477
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112529 0.810±0.39 1.250±0.41 3.736±0.26 20.399±7.21 2.027±0.36 1.082±0.51 4.222±0.22 3.052±0.86 2.416±2.37 2.656±0.39 22.330±1.09 1.624±0.39 2.714±1.11 0.517±0.23
ENSMUST00000127089 0.205±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.138±0.00 1.018±0.00 0.132±0.01
ENSMUST00000145477 1.983±1.18 16.672±1.85 3.505±0.42 13.771±4.06 5.242±1.85 4.097±1.18 3.904±1.47 9.880±2.40 5.906±4.30 5.811±1.46 9.565±1.01 6.203±3.49 17.250±12.40 0.854±0.29

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0006597 IEA spermine biosynthetic process
GO:0008152 IEA metabolic process
GO:0016768 IEA spermine synthase activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008155 sms spermine synthase protein_coding Danio_rerio
ENSG00000102172 SMS spermine synthase protein_coding Homo_sapiens

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