C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear transcription factor, X-box binding-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000072889 Nfxl1 10090 - 5:72513301-72559684 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074948 Nfxl1-004 72540364-72559599 protein_coding
  ENSMUST00000087216 Nfxl1-001 72513301-72559684 protein_coding
  ENSMUST00000134452 Nfxl1-005 72550222-72559412 retained_intron
  ENSMUST00000135318 Nfxl1-002 72513304-72559645 nonsense_mediated_decay
  ENSMUST00000146761 Nfxl1-003 72550224-72559648 retained_intron
  ENSMUST00000149340 Nfxl1-008 72516853-72522198 retained_intron
  ENSMUST00000149393 Nfxl1-006 72513515-72517347 retained_intron
  ENSMUST00000153882 Nfxl1-007 72521739-72524659 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087216ENSMUST00000135318ENSMUST00000146761ENSMUST00000149393ENSMUST00000153882
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087216 2.981±1.91 1.523±0.32 3.734±0.34 3.678±1.87 1.467±0.43 2.987±0.97 0.791±0.26 1.691±0.56 3.136±1.71 3.208±0.54 0.710±0.16 5.455±1.43 6.368±1.59 3.792±1.46
ENSMUST00000135318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.276±0.00 N/A 1.061±0.00 N/A
ENSMUST00000146761 N/A 1.463±0.53 N/A N/A N/A N/A N/A N/A N/A N/A 0.768±0.00 N/A N/A N/A
ENSMUST00000149393 0.901±0.00 N/A N/A 2.124±0.19 2.222±0.75 3.017±0.00 0.699±0.25 1.136±0.30 2.135±1.01 2.052±0.00 0.344±0.00 5.202±2.75 4.991±1.15 3.382±0.14
ENSMUST00000153882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.911±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RD CIL_0008RD_0002 VISTA 5:72193972-72795406
CIL_0001MZ CIL_0001MZ_0002 CGP 5:72300025-72559684

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070127 nfxl1 nuclear transcription factor, X-box binding-like 1 protein_coding Danio_rerio
ENSG00000170448 NFXL1 nuclear transcription factor, X-box binding-like 1 protein_coding Homo_sapiens

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