C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear transcription factor, X-box binding-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170448 NFXL1 9606 - 4:47847233-47914667 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000329043 NFXL1-201 47847233-47914667 protein_coding
  ENST00000381538 NFXL1-001 47847240-47914616 protein_coding
  ENST00000464756 NFXL1-003 47847240-47914636 nonsense_mediated_decay
  ENST00000502448 NFXL1-008 47847240-47878704 retained_intron
  ENST00000507131 NFXL1-004 47848304-47914616 retained_intron
  ENST00000507489 NFXL1-002 47847243-47914539 protein_coding
  ENST00000508115 NFXL1-007 47851057-47877144 retained_intron
  ENST00000511452 NFXL1-005 47851083-47852208 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000329043ENST00000381538ENST00000464756ENST00000502448ENST00000507131ENST00000507489
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000329043 N/A N/A N/A 0.447±0.00 0.397±0.00 N/A N/A N/A N/A N/A N/A 0.411±0.00 0.797±0.00 N/A
ENST00000381538 0.852±0.00 1.165±0.00 0.484±0.00 0.705±0.37 0.752±0.00 1.110±0.79 N/A 1.804±0.46 0.841±0.00 0.893±0.00 1.001±0.00 1.615±0.10 0.876±0.10 4.569±0.74
ENST00000464756 N/A N/A N/A N/A 0.616±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502448 0.319±0.00 N/A N/A N/A 0.390±0.00 0.734±0.00 0.757±0.00 N/A 0.751±0.00 N/A N/A 0.846±0.25 N/A 3.580±0.00
ENST00000507131 N/A N/A 1.172±0.00 N/A 0.932±0.00 0.522±0.00 N/A N/A 0.514±0.00 N/A 0.703±0.00 1.587±0.00 N/A 3.687±0.00
ENST00000507489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.721±0.00 0.681±0.00 6.406±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RD CIL_0008RD_0001 VISTA 4:47524449-48126035
CIL_0001MZ CIL_0001MZ_0001 CGP 4:47593998-47914667

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070127 nfxl1 nuclear transcription factor, X-box binding-like 1 protein_coding Danio_rerio
ENSMUSG00000072889 Nfxl1 nuclear transcription factor, X-box binding-like 1 protein_coding Mus_musculus

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