C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear transcription factor, X-box binding-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087216 Nfxl1-001 ENSMUSG00000072889 10090 - 5:72513301-72559684 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087216
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087216 2.981±1.91 1.523±0.32 3.734±0.34 3.678±1.87 1.467±0.43 2.987±0.97 0.791±0.26 1.691±0.56 3.136±1.71 3.208±0.54 0.710±0.16 5.455±1.43 6.368±1.59 3.792±1.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RD CIL_0008RD_0002 VISTA 5:72193972-72795406
CIL_0001MZ CIL_0001MZ_0002 CGP 5:72300025-72559684

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329043 NFXL1-201 protein_coding Homo_sapiens 0 3157
ENST00000381538 NFXL1-001 protein_coding Homo_sapiens 0 3190
ENST00000464756 NFXL1-003 nonsense_mediated_decay Homo_sapiens 0 2398
ENST00000502448 NFXL1-008 retained_intron Homo_sapiens 0 907
ENST00000507131 NFXL1-004 retained_intron Homo_sapiens 0 3107
ENST00000507489 NFXL1-002 protein_coding Homo_sapiens 0 3157
ENST00000508115 NFXL1-007 retained_intron Homo_sapiens 0 632

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