C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vesicle-associated membrane protein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000073002 Vamp5 10090 - 6:72368049-72380468 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074231 Vamp5-201 72368049-72380468 protein_coding
  ENSMUST00000101285 Vamp5-202 72368049-72380468 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074231ENSMUST00000101285
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074231 N/A N/A N/A N/A 0.681±0.00 0.202±0.00 N/A N/A 0.393±0.00 N/A 1.451±0.00 N/A 0.259±0.00 N/A
ENSMUST00000101285 2.539±0.95 3.707±1.38 12.739±0.00 0.862±0.40 4.668±2.18 1.530±0.33 10.830±1.84 5.595±1.90 8.588±6.59 13.628±0.69 6.422±3.68 4.754±1.81 2.190±1.01 3.619±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0002 VISTA 6:71915186-72518828
CIL_00084P CIL_00084P_0002 VISTA 6:71915200-72518764
CIL_0009AX CIL_0009AX_0002 VISTA 6:72353769-72955984

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005770 IDA late endosome
GO:0005802 IEA trans-Golgi network
GO:0005886 IDA plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0007519 IDA skeletal muscle tissue development
GO:0009986 IEA cell surface
GO:0014704 IDA intercalated disc
GO:0030154 IEA cell differentiation
GO:0030659 IDA cytoplasmic vesicle membrane
GO:0031301 IDA integral component of organelle membrane
GO:0043001 IMP Golgi to plasma membrane protein transport
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068262 vamp5 vesicle-associated membrane protein 5 protein_coding Danio_rerio
ENSG00000168899 VAMP5 vesicle-associated membrane protein 5 protein_coding Homo_sapiens

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