C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vesicle-associated membrane protein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168899 VAMP5 9606 + 2:85584408-85593412 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306384 VAMP5-001 85584408-85593412 protein_coding
  ENST00000462451 VAMP5-002 85591597-85593243 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306384ENST00000462451
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306384 80.517±0.00 104.572±0.00 0.332±0.00 9.072±8.59 58.473±0.00 36.279±35.69 25.871±0.00 23.340±23.00 18.637±18.55 66.186±65.49 14.517±10.09 37.514±22.18 67.637±25.47 26.711±17.54
ENST00000462451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.082±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0001 VISTA 2:85469895-86073896
CIL_00084P CIL_00084P_0001 VISTA 2:85470344-86073882
CIL_0004ID CIL_0004ID_0002 CGP 2:85561562-85593412

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005770 ISS late endosome
GO:0005802 IEA trans-Golgi network
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0007517 TAS muscle organ development
GO:0007519 IEA skeletal muscle tissue development
GO:0009986 IDA cell surface
GO:0014704 ISS intercalated disc
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030154 IEA cell differentiation
GO:0030659 ISS cytoplasmic vesicle membrane
GO:0031301 ISS integral component of organelle membrane
GO:0043001 IEA Golgi to plasma membrane protein transport
GO:0048471 ISS perinuclear region of cytoplasm
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068262 vamp5 vesicle-associated membrane protein 5 protein_coding Danio_rerio
ENSMUSG00000073002 Vamp5 vesicle-associated membrane protein 5 protein_coding Mus_musculus

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