C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histocompatibility 2, blastocyst
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000073406 H2-Bl 10090 - 17:36080115-36084249 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000173080 H2-Bl-201 36080189-36084249 protein_coding
  ENSMUST00000183560 H2-Bl-009 36080189-36084223 protein_coding
  ENSMUST00000183999 H2-Bl-011 36080189-36084223 protein_coding
  ENSMUST00000184502 H2-Bl-008 36080189-36084223 protein_coding
  ENSMUST00000184850 H2-Bl-006 36080115-36081987 retained_intron
  ENSMUST00000185087 H2-Bl-005 36080189-36084223 nonsense_mediated_decay
  ENSMUST00000185167 H2-Bl-002 36080189-36084223 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000173080ENSMUST00000183560ENSMUST00000183999ENSMUST00000184502ENSMUST00000184850ENSMUST00000185087ENSMUST00000185167
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000173080 N/A N/A 0.040±0.00 N/A N/A 1.119±0.29 0.426±0.18 0.126±0.10 N/A N/A 0.150±0.00 0.036±0.00 0.230±0.01
ENSMUST00000183560 0.329±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.185±0.00 N/A N/A
ENSMUST00000184502 N/A 0.058±0.00 N/A N/A N/A N/A N/A 0.083±0.03 0.045±0.00 0.087±0.00 0.079±0.00 0.210±0.15 N/A
ENSMUST00000184850 0.043±0.00 N/A 0.151±0.05 0.180±0.03 N/A 0.511±0.21 0.072±0.02 0.161±0.08 N/A 0.095±0.03 0.229±0.17 0.238±0.07 0.083±0.00
ENSMUST00000185087 N/A 0.041±0.00 N/A N/A N/A N/A 0.086±0.00 0.029±0.02 N/A N/A 0.210±0.03 N/A 0.059±0.00
ENSMUST00000185167 0.157±0.16 N/A N/A N/A 0.141±0.14 N/A N/A 0.099±0.00 N/A N/A 0.448±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001916 IEA positive regulation of T cell mediated cytotoxicity
GO:0002474 IEA antigen processing and presentation of peptide antigen via MHC class I
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006955 IEA immune response
GO:0009986 IDA cell surface
GO:0016021 IDA integral component of membrane
GO:0019882 IEA antigen processing and presentation
GO:0042270 IDA protection from natural killer cell mediated cytotoxicity
GO:0042605 IEA peptide antigen binding
GO:0042612 IEA MHC class I protein complex

Homologs

No Homologs available.

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