C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox B2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000075588 Hoxb2 10090 + 11:96350525-96354012 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000100523 Hoxb2-001 96351631-96354012 protein_coding
  ENSMUST00000182030 Hoxb2-002 96350525-96353658 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000100523ENSMUST00000182030
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000100523 5.447±0.53 25.799±3.65 11.704±1.39 5.720±3.96 6.580±2.91 4.051±0.72 0.479±0.13 12.301±1.58 0.938±0.48 9.505±1.20 0.371±0.18 7.849±3.30 0.606±0.46
ENSMUST00000182030 1.133±0.00 N/A N/A N/A 0.699±0.07 N/A 0.223±0.03 N/A 0.170±0.03 N/A 0.187±0.07 0.964±0.49 0.091±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002011 IGI morphogenesis of an epithelial sheet
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0009953 IGI dorsal/ventral pattern formation
GO:0021569 IGI rhombomere 3 development
GO:0021570 IGI rhombomere 4 development
GO:0021612 IMP facial nerve structural organization
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048705 IGI skeletal system morphogenesis
GO:0048857 IMP neural nucleus development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000175 hoxb2a homeo box B2a protein_coding Danio_rerio
ENSG00000173917 HOXB2 homeobox B2 protein_coding Homo_sapiens

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