C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100523 Hoxb2-001 ENSMUSG00000075588 10090 + 11:96351631-96354012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000100523
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000100523 5.447±0.53 25.799±3.65 11.704±1.39 5.720±3.96 6.580±2.91 4.051±0.72 0.479±0.13 12.301±1.58 0.938±0.48 9.505±1.20 0.371±0.18 7.849±3.30 0.606±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002011 IGI morphogenesis of an epithelial sheet
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0009953 IGI dorsal/ventral pattern formation
GO:0021569 IGI rhombomere 3 development
GO:0021570 IGI rhombomere 4 development
GO:0021612 IMP facial nerve structural organization
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048705 IGI skeletal system morphogenesis
GO:0048857 IMP neural nucleus development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000146636 hoxb2a-001 protein_coding Danio_rerio 6.00036e-42 176
ENST00000222726 HOXA5-001 protein_coding Homo_sapiens 0.00003 55
ENST00000222728 HOXA6-001 protein_coding Homo_sapiens 0.000000000000002 88
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 0.0000000001 73
ENST00000330070 HOXB2-001 protein_coding Homo_sapiens 0 1149
ENST00000360046 HOXA4-001 protein_coding Homo_sapiens 0.00000000002 75
ENST00000428284 HOXA4-201 protein_coding Homo_sapiens 0.00000000002 75
ENST00000511914 HOXA4-004 protein_coding Homo_sapiens 0.00000000001 75
ENST00000520854 HOXA5-002 processed_transcript Homo_sapiens 0.000006 55
ENST00000521478 HOXA6-002 processed_transcript Homo_sapiens 0.000000000000001 88
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 0.00000000002 73
ENST00000571287 HOXB2-002 processed_transcript Homo_sapiens 0 364
ENST00000610970 HOXA4-202 protein_coding Homo_sapiens 0.00000000002 75

Loading