C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromodomain helicase DNA binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000078671 Chd2 10090 - 7:73426691-73541746 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026895 Chd2-005 73501920-73519588 protein_coding
  ENSMUST00000038366 Chd2-004 73451813-73461733 processed_transcript
  ENSMUST00000169922 Chd2-001 73426691-73541746 protein_coding
  ENSMUST00000172704 Chd2-002 73519523-73537621 protein_coding
  ENSMUST00000173785 Chd2-003 73429988-73447233 protein_coding
  ENSMUST00000181971 Chd2-007 73454328-73455592 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026895ENSMUST00000169922
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.625±0.00
ENSMUST00000169922 2.365±0.77 4.733±2.31 4.802±1.90 6.545±2.59 2.513±0.64 5.207±2.67 1.812±0.18 2.370±0.25 2.371±1.18 4.338±0.28 3.021±0.42 5.660±4.01 8.390±1.85 1.512±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GY CIL_0006GY_0002 CGP 7:73375520-73541746

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001046 IMP core promoter sequence-specific DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007517 IMP muscle organ development
GO:0016568 IEA chromatin modification
GO:0042393 IDA histone binding
GO:0044822 IEA poly(A) RNA binding
GO:0060218 IMP hematopoietic stem cell differentiation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060687 chd2 chromodomain helicase DNA binding protein 2 protein_coding Danio_rerio
ENSG00000173575 CHD2 chromodomain helicase DNA binding protein 2 protein_coding Homo_sapiens

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