C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: peptide deformylase (mitochondrial)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000078931 Pdf 10090 - 8:107044698-107048614 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055316 Pdf-002 107046520-107048614 protein_coding
  ENSMUST00000154271 Pdf-001 107044698-107047186 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000055316
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000055316 14.696±0.80 81.837±16.19 13.600±1.30 26.802±1.29 19.166±4.26 27.407±1.74 17.188±3.44 12.749±3.70 19.202±7.31 20.086±1.07 43.605±10.78 12.437±3.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YA CIL_0004YA_0003 CGP 8:106935750-107045755
CIL_0008KB CIL_0008KB_0002 VISTA 8:107038845-107639359
CIL_0004IA CIL_0004IA_0002 CGP 8:107044698-107056689

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005739 IEA mitochondrion
GO:0008284 IEA positive regulation of cell proliferation
GO:0018206 IEA peptidyl-methionine modification
GO:0031365 IEA N-terminal protein amino acid modification
GO:0042586 IEA peptide deformylase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013950 pdf peptide deformylase (mitochondrial) protein_coding Danio_rerio
ENSG00000258429 PDF peptide deformylase (mitochondrial) protein_coding Homo_sapiens

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