C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109627 Cbx6-001 ENSMUSG00000089715 10090 - 15:79823896-79834688 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109627
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109627 25.996±13.65 16.770±0.78 27.679±12.29 19.500±1.59 14.693±1.76 7.636±0.99 6.385±0.80 16.809±0.93 3.216±2.14 22.505±0.50 2.642±0.79 25.463±11.76 2.892±1.11 1.994±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NH CIL_0005NH_0002 CGP 15:79789675-79834688

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IDA heterochromatin
GO:0003727 IDA single-stranded RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0031519 ISS PcG protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216083 CBX6-003 protein_coding Homo_sapiens 0 992
ENST00000407418 CBX6-001 protein_coding Homo_sapiens 0 1633
ENST00000469420 CBX6-002 retained_intron Homo_sapiens 0 466

Loading