C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA D130058E05 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000092627 D130058E05Rik 10090 + 1:89930234-89933290 processed_transcript
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000173856 D130058E05Rik-002 89930234-89931862 antisense
  ENSMUST00000189763 D130058E05Rik-003 89930261-89933290 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000173856ENSMUST00000189763
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000173856 0.177±0.11 0.032±0.02 0.028±0.00 0.372±0.00 0.301±0.22 0.121±0.06 0.038±0.00 0.039±0.02 0.495±0.23 0.077±0.04 0.040±0.00 1.338±0.00 0.100±0.02 0.059±0.01
ENSMUST00000189763 0.039±0.03 0.041±0.02 N/A 3.054±2.08 0.317±0.22 0.095±0.07 0.020±0.01 N/A 0.154±0.06 0.049±0.01 0.042±0.00 2.560±1.06 0.049±0.03 0.016±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U0 CIL_0007U0_0002 VISTA 1:89413750-90014911
CIL_0003RE CIL_0003RE_0002 CGP 1:89454806-89931179
CIL_0007RK CIL_0007RK_0002 VISTA 1:89547708-90149945
CIL_0008K4 CIL_0008K4_0002 VISTA 1:89625517-90226000
CIL_0007XN CIL_0007XN_0002 VISTA 1:89706775-90307806
CIL_0003RD CIL_0003RD_0002 CGP 1:89927956-90014666

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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