C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003RD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168505-ENSG00000182177 CGP 9606 2:236165236-236264409
GeneTranscriptPositionBiotype
ENSG00000168505 (GBX2)
gastrulation brain homeobox 2 		ENST00000306318 (GBX2-001) 236165236-236168369 protein_coding
ENST00000465889 (GBX2-002) 236165734-236167329 processed_transcript
ENST00000551105 (GBX2-003) 236165729-236168009 protein_coding
ENSG00000182177 (ASB18)
ankyrin repeat and SOCS box containing 18 		ENST00000409749 (ASB18-001) 236194872-236264345 protein_coding
ENST00000430053 (ASB18-006) 236214754-236264409 protein_coding
ENST00000447030 (ASB18-005) 236196058-236214601 protein_coding
ENST00000469508 (ASB18-004) 236250541-236254171 processed_transcript
ENST00000487961 (ASB18-003) 236247329-236264360 retained_intron
ENSG00000200745 (RNU1-31P)
RNA, U1 small nuclear 31, pseudogene 		ENST00000363875 (RNU1-31P-201) 236210373-236210548 snRNA
ENSG00000233611 (AC079135.1)
 ENST00000415226 (AC079135.1-002) 236167447-236294927 antisense
ENST00000483218 (AC079135.1-001) 236167465-236214225 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003RD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034486-ENSMUSG00000067081 CGP 10090 1:89927956-90014666
GeneTranscriptPositionBiotype
ENSMUSG00000034486 (Gbx2)
gastrulation brain homeobox 2 		ENSMUST00000036954 (Gbx2-001) 89927956-89931179 protein_coding
ENSMUST00000187633 (Gbx2-002) 89927966-89929185 retained_intron
ENSMUSG00000067081 (Asb18)
ankyrin repeat and SOCS box-containing 18 		ENSMUST00000086882 (Asb18-001) 89950220-90014577 protein_coding
ENSMUST00000097656 (Asb18-201) 89952591-90014666 protein_coding
ENSMUST00000151330 (Asb18-003) 89952679-90014577 nonsense_mediated_decay
ENSMUST00000154228 (Asb18-002) 89952678-90014577 nonsense_mediated_decay
ENSMUSG00000092627 (D130058E05Rik)
RIKEN cDNA D130058E05 gene 		ENSMUST00000173856 (D130058E05Rik-002) 89930234-89931862 antisense
ENSMUST00000189763 (D130058E05Rik-003) 89930261-89933290 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RD_0001ENSG00000168505ENST00000306318ENST00000465889ENST00000551105ENSG00000182177ENST00000409749ENST00000430053ENST00000447030ENST00000469508ENST00000487961ENSG00000200745ENST00000363875ENSG00000233611ENST00000415226ENST00000483218CIL_0003RD_0002ENSMUSG00000034486ENSMUST00000036954ENSMUST00000187633ENSMUSG00000067081ENSMUST00000086882ENSMUST00000097656ENSMUST00000151330ENSMUST00000154228ENSMUSG00000092627ENSMUST00000173856ENSMUST00000189763
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RD_0001ENSG00000168505ENST00000306318ENST00000465889ENST00000551105ENSG00000182177ENST00000409749ENST00000430053ENST00000447030ENST00000469508ENST00000487961ENSG00000200745ENST00000363875ENSG00000233611ENST00000415226ENST00000483218CIL_0003RD_0002ENSMUSG00000034486ENSMUST00000036954ENSMUST00000187633ENSMUSG00000067081ENSMUST00000086882ENSMUSG00000092627ENSMUST00000173856ENSMUST00000189763
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000168505 ENST00000306318 N/A N/A N/A 0.097±0.08 N/A N/A N/A N/A N/A N/A N/A N/A 0.140±0.02 0.246±0.04
ENST00000465889 N/A 0.143±0.00 N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A 0.054±0.01 0.122±0.04 N/A
ENST00000551105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.249±0.00
ENSG00000182177 ENST00000409749 N/A N/A N/A N/A N/A N/A 1.128±0.00 N/A N/A N/A N/A N/A N/A 0.060±0.00
ENST00000430053 N/A N/A N/A N/A N/A N/A 1.067±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000447030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.438±0.00
ENST00000469508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.911±0.00 N/A N/A N/A
ENST00000487961 0.017±0.00 0.094±0.00 N/A 0.063±0.00 0.049±0.00 0.040±0.00 0.197±0.01 0.076±0.00 0.003±0.00 0.046±0.00 0.012±0.00 0.008±0.00 0.010±0.00 0.025±0.01
ENSG00000200745 ENST00000363875 N/A N/A N/A N/A N/A N/A 1.824±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000233611 ENST00000415226 N/A 0.040±0.00 N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A N/A 0.162±0.00 N/A
ENST00000483218 N/A N/A N/A 0.055±0.00 N/A N/A 0.435±0.00 N/A N/A 0.039±0.00 N/A N/A 0.098±0.00 0.097±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034486 ENSMUST00000036954 N/A N/A N/A 0.864±0.75 N/A N/A N/A N/A N/A N/A 0.143±0.00 0.134±0.04 0.020±0.00 N/A
ENSMUST00000187633 0.032±0.00 N/A N/A 6.782±4.59 0.213±0.08 0.135±0.00 0.047±0.02 N/A 0.470±0.16 0.032±0.00 0.152±0.09 0.906±0.39 0.080±0.04 0.028±0.00
ENSMUSG00000067081 ENSMUST00000086882 2.253±1.46 0.039±0.02 0.743±0.01 0.576±0.21 0.180±0.04 0.186±0.05 2.930±0.55 1.041±0.22 0.382±0.22 0.531±0.25 4.281±0.48 0.652±0.14 N/A 0.659±0.03
ENSMUST00000097656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092627 ENSMUST00000173856 0.177±0.11 0.032±0.02 0.028±0.00 0.372±0.00 0.301±0.22 0.121±0.06 0.038±0.00 0.039±0.02 0.495±0.23 0.077±0.04 0.040±0.00 1.338±0.00 0.100±0.02 0.059±0.01
ENSMUST00000189763 0.039±0.03 0.041±0.02 N/A 3.054±2.08 0.317±0.22 0.095±0.07 0.020±0.01 N/A 0.154±0.06 0.049±0.01 0.042±0.00 2.560±1.06 0.049±0.03 0.016±0.00

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