C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003RE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157985-ENSG00000168505 CGP 9606 2:235494089-236168369
GeneTranscriptPositionBiotype
ENSG00000157985 (AGAP1)
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 		ENST00000304032 (AGAP1-001) 235494107-236131800 protein_coding
ENST00000336665 (AGAP1-002) 235494107-236126554 protein_coding
ENST00000402604 (AGAP1-006) 235524324-235744811 protein_coding
ENST00000409457 (AGAP1-003) 235494089-235853202 protein_coding
ENST00000409538 (AGAP1-004) 235669604-236126554 protein_coding
ENST00000418654 (AGAP1-007) 235908842-236120246 protein_coding
ENST00000428334 (AGAP1-201) 235709178-236131800 protein_coding
ENST00000448025 (AGAP1-010) 235883395-236036697 protein_coding
ENST00000453371 (AGAP1-005) 236045937-236125482 processed_transcript
ENST00000466575 (AGAP1-008) 236040612-236120279 retained_intron
ENST00000482882 (AGAP1-009) 236040751-236049831 retained_intron
ENST00000614409 (AGAP1-202) 235709177-236131800 protein_coding
ENST00000619456 (AGAP1-203) 235709177-235852853 protein_coding
ENSG00000168505 (GBX2)
gastrulation brain homeobox 2 		ENST00000306318 (GBX2-001) 236165236-236168369 protein_coding
ENST00000465889 (GBX2-002) 236165734-236167329 processed_transcript
ENST00000551105 (GBX2-003) 236165729-236168009 protein_coding
ENSG00000221704 (AC012305.1)
 ENST00000408777 (AC012305.1-201) 235571931-235572003 miRNA
ENSG00000222007 (AC064874.1)
 ENST00000409661 (AC064874.1-002) 235773855-235775794 antisense
ENST00000440101 (AC064874.1-001) 235773855-235783387 antisense
ENSG00000228499 (TMSB10P1)
thymosin beta 10 pseudogene 1 		ENST00000415070 (TMSB10P1-001) 235882362-235882493 processed_pseudogene
ENSG00000233611 (AC079135.1)
 ENST00000415226 (AC079135.1-002) 236167447-236294927 antisense
ENST00000483218 (AC079135.1-001) 236167465-236214225 antisense
ENSG00000235529 (AGAP1-IT1)
AGAP1 intronic transcript 1 (non-protein coding) 		ENST00000440498 (AGAP1-IT1-001) 235505751-235507566 sense_intronic
ENSG00000264676 (RN7SL204P)
RNA, 7SL, cytoplasmic 204, pseudogene 		ENST00000582831 (RN7SL204P-201) 236072295-236072556 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003RE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055013-ENSMUSG00000034486 CGP 10090 1:89454806-89931179
GeneTranscriptPositionBiotype
ENSMUSG00000034486 (Gbx2)
gastrulation brain homeobox 2 		ENSMUST00000036954 (Gbx2-001) 89927956-89931179 protein_coding
ENSMUST00000187633 (Gbx2-002) 89927966-89929185 retained_intron
ENSMUSG00000055013 (Agap1)
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 		ENSMUST00000027521 (Agap1-001) 89454806-89897617 protein_coding
ENSMUST00000074945 (Agap1-003) 89580236-89895277 protein_coding
ENSMUST00000185417 (Agap1-004) 89455256-89459706 retained_intron
ENSMUST00000190096 (Agap1-002) 89454874-89890001 protein_coding
ENSMUSG00000088371 (Gm25180)
predicted gene, 25180 		ENSMUST00000157746 (Gm25180-201) 89563360-89563474 rRNA
ENSMUSG00000088775 (Gm26037)
predicted gene, 26037 		ENSMUST00000158150 (Gm26037-201) 89684802-89685112 misc_RNA
ENSMUSG00000092627 (D130058E05Rik)
RIKEN cDNA D130058E05 gene 		ENSMUST00000173856 (D130058E05Rik-002) 89930234-89931862 antisense
ENSMUST00000189763 (D130058E05Rik-003) 89930261-89933290 retained_intron
ENSMUSG00000101662 (RP23-205B8.1)
predicted gene 28499 		ENSMUST00000191576 (RP23-205B8.1-001) 89568765-89576602 sense_intronic
ENSMUSG00000102009 (RP23-205B8.2)
RIKEN cDNA 4933400F21 gene 		ENSMUST00000186098 (RP23-205B8.2-001) 89650529-89683908 antisense
ENSMUST00000187011 (RP23-205B8.2-003) 89681085-89683888 retained_intron
ENSMUST00000187295 (RP23-205B8.2-002) 89677487-89683894 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RE_0001ENSG00000157985ENST00000304032ENST00000336665ENST00000402604ENST00000409538ENST00000428334ENST00000448025ENST00000453371ENST00000466575ENST00000614409ENST00000619456ENSG00000168505ENST00000306318ENST00000465889ENST00000551105ENSG00000221704ENST00000408777ENSG00000222007ENST00000409661ENST00000440101ENSG00000228499ENST00000415070ENSG00000233611ENST00000415226ENST00000483218ENSG00000235529ENST00000440498ENSG00000264676ENST00000582831CIL_0003RE_0002ENSMUSG00000034486ENSMUST00000036954ENSMUST00000187633ENSMUSG00000055013ENSMUST00000027521ENSMUST00000074945ENSMUST00000190096ENSMUSG00000088371ENSMUST00000157746ENSMUSG00000088775ENSMUST00000158150ENSMUSG00000092627ENSMUST00000173856ENSMUST00000189763ENSMUSG00000101662ENSMUST00000191576ENSMUSG00000102009ENSMUST00000186098ENSMUST00000187011ENSMUST00000187295
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000157985 ENST00000304032 0.744±0.00 0.825±0.00 0.989±0.00 4.427±0.00 1.595±0.00 N/A 0.872±0.77 1.265±0.00 0.546±0.00 1.380±0.94 1.020±0.90 1.746±0.90 0.927±0.31 2.190±1.18
ENST00000336665 N/A N/A 1.721±0.00 N/A 1.302±0.00 2.565±0.00 0.444±0.00 N/A 1.687±0.00 1.498±0.00 N/A 1.761±0.74 0.776±0.05 N/A
ENST00000402604 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.465±0.00 N/A N/A N/A N/A
ENST00000409457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409538 N/A N/A N/A N/A 1.177±0.00 1.295±0.00 0.142±0.00 N/A N/A 0.451±0.00 N/A N/A N/A N/A
ENST00000418654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428334 0.912±0.00 N/A N/A 2.140±0.00 1.957±0.00 4.942±0.00 N/A 0.821±0.55 N/A N/A 0.225±0.00 0.494±0.00 0.529±0.09 1.623±0.00
ENST00000448025 N/A N/A N/A N/A N/A N/A N/A 1.410±0.00 N/A N/A N/A N/A N/A N/A
ENST00000453371 2.042±0.00 2.152±0.00 N/A N/A N/A N/A N/A 0.678±0.00 1.185±0.00 N/A N/A N/A 1.486±0.09 N/A
ENST00000466575 N/A N/A 35.583±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614409 1.678±0.00 0.752±0.00 0.751±0.00 10.630±5.57 0.691±0.00 1.008±0.05 1.124±0.98 0.607±0.00 0.605±0.26 N/A 0.885±0.00 1.108±0.14 0.711±0.21 2.390±0.00
ENST00000619456 N/A N/A 7.181±0.00 N/A N/A 10.154±0.00 1.928±0.00 N/A 9.938±0.00 3.183±0.00 1.374±0.00 12.109±0.00 N/A N/A
ENSG00000168505 ENST00000306318 N/A N/A N/A 0.097±0.08 N/A N/A N/A N/A N/A N/A N/A N/A 0.140±0.02 0.246±0.04
ENST00000465889 N/A 0.143±0.00 N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A 0.054±0.01 0.122±0.04 N/A
ENST00000551105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.249±0.00
ENSG00000221704 ENST00000408777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.660±0.00
ENSG00000222007 ENST00000409661 N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.957±0.00
ENST00000440101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.527±0.00
ENSG00000228499 ENST00000415070 1.000±0.00 0.221±0.00 N/A 0.242±0.00 N/A N/A N/A N/A N/A N/A N/A 46.614±0.00 N/A N/A
ENSG00000233611 ENST00000415226 N/A 0.040±0.00 N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A N/A 0.162±0.00 N/A
ENST00000483218 N/A N/A N/A 0.055±0.00 N/A N/A 0.435±0.00 N/A N/A 0.039±0.00 N/A N/A 0.098±0.00 0.097±0.00
ENSG00000235529 ENST00000440498 N/A 0.060±0.00 0.232±0.00 0.331±0.00 0.352±0.01 0.257±0.08 0.061±0.01 0.705±0.00 0.358±0.00 1.024±0.00 N/A 0.516±0.38 0.741±0.64 0.267±0.07
ENSG00000264676 ENST00000582831 0.173±0.00 0.741±0.00 N/A 0.106±0.00 0.591±0.00 0.089±0.00 N/A 0.099±0.00 0.085±0.00 0.655±0.00 0.083±0.00 0.917±0.76 N/A 0.522±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034486 ENSMUST00000036954 N/A N/A N/A 0.864±0.75 N/A N/A N/A N/A N/A N/A 0.143±0.00 0.134±0.04 0.020±0.00 N/A
ENSMUST00000187633 0.032±0.00 N/A N/A 6.782±4.59 0.213±0.08 0.135±0.00 0.047±0.02 N/A 0.470±0.16 0.032±0.00 0.152±0.09 0.906±0.39 0.080±0.04 0.028±0.00
ENSMUSG00000055013 ENSMUST00000027521 1.750±0.48 4.700±0.48 N/A 6.671±0.00 2.912±1.17 6.476±0.79 1.362±0.28 5.748±1.00 0.427±0.16 6.266±0.70 0.214±0.03 4.054±1.62 0.427±0.00 0.749±0.00
ENSMUST00000074945 3.206±1.29 1.271±0.32 0.822±0.00 12.783±5.67 3.084±1.03 3.078±0.00 1.540±0.54 1.275±0.03 0.134±0.01 2.351±0.10 1.299±0.16 3.386±2.05 1.045±0.27 0.125±0.00
ENSMUST00000185417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190096 4.222±1.69 4.874±2.35 N/A 2.437±0.00 3.355±0.38 7.856±2.27 2.258±0.28 8.331±1.42 0.947±0.19 6.206±0.81 0.639±0.12 5.882±1.59 3.318±0.99 3.590±2.19
ENSMUSG00000088371 ENSMUST00000157746 N/A N/A N/A 24.811±0.00 1697.000±0.00 N/A N/A N/A N/A N/A N/A 18.344±0.00 N/A 1184.350±0.00
ENSMUSG00000088775 ENSMUST00000158150 0.288±0.00 N/A 0.111±0.00 0.150±0.00 N/A N/A N/A N/A N/A 0.315±0.00 N/A 0.650±0.33 N/A 0.190±0.00
ENSMUSG00000092627 ENSMUST00000173856 0.177±0.11 0.032±0.02 0.028±0.00 0.372±0.00 0.301±0.22 0.121±0.06 0.038±0.00 0.039±0.02 0.495±0.23 0.077±0.04 0.040±0.00 1.338±0.00 0.100±0.02 0.059±0.01
ENSMUST00000189763 0.039±0.03 0.041±0.02 N/A 3.054±2.08 0.317±0.22 0.095±0.07 0.020±0.01 N/A 0.154±0.06 0.049±0.01 0.042±0.00 2.560±1.06 0.049±0.03 0.016±0.00
ENSMUSG00000101662 ENSMUST00000191576 0.437±0.21 N/A 0.088±0.03 0.057±0.03 0.246±0.13 N/A N/A 0.106±0.01 0.049±0.03 0.132±0.01 N/A 0.327±0.16 0.014±0.00 0.175±0.12
ENSMUSG00000102009 ENSMUST00000186098 N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A 0.049±0.00 N/A N/A 0.044±0.00 N/A N/A
ENSMUST00000187011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.244±0.00
ENSMUST00000187295 0.088±0.03 0.057±0.04 0.026±0.00 0.109±0.11 0.077±0.03 0.067±0.02 0.063±0.03 0.075±0.00 0.036±0.02 0.271±0.03 0.019±0.00 0.052±0.04 0.057±0.03 4.764±2.43

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