C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SIX homeobox 3, opposite strand 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000093460 Six3os1 10090 - 17:85600651-85618398 processed_transcript
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000159030 Six3os1-013 85610493-85618275 antisense
  ENSMUST00000160691 Six3os1-011 85613682-85618358 antisense
  ENSMUST00000161146 Six3os1-006 85601933-85618372 antisense
  ENSMUST00000161688 Six3os1-012 85612873-85618275 antisense
  ENSMUST00000175913 Six3os1-008 85613681-85618073 antisense
  ENSMUST00000175921 Six3os1-009 85600651-85615348 antisense
  ENSMUST00000176375 Six3os1-007 85613201-85616246 antisense
  ENSMUST00000176432 Six3os1-005 85611620-85618221 antisense
  ENSMUST00000176556 Six3os1-002 85611238-85618385 retained_intron
  ENSMUST00000176917 Six3os1-010 85609551-85618340 antisense
  ENSMUST00000176958 Six3os1-003 85607360-85618365 antisense
  ENSMUST00000177220 Six3os1-001 85607927-85618398 antisense
  ENSMUST00000177487 Six3os1-004 85611620-85618223 antisense

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverLungPlacentaTestisENSMUST00000159030ENSMUST00000161146ENSMUST00000175921ENSMUST00000176375ENSMUST00000176556ENSMUST00000176958ENSMUST00000177220
Transcript ID Bladder Brain Liver Lung Placenta Testis
ENSMUST00000159030 N/A N/A 0.005±0.00 N/A N/A 0.030±0.01
ENSMUST00000161146 N/A N/A N/A N/A 0.041±0.00 N/A
ENSMUST00000175921 0.010±0.00 5.437±0.97 0.021±0.02 N/A 0.016±0.00 N/A
ENSMUST00000176375 N/A N/A 0.029±0.00 N/A N/A N/A
ENSMUST00000176556 N/A 2.789±1.67 0.009±0.00 0.007±0.00 0.031±0.03 N/A
ENSMUST00000176958 N/A N/A 0.006±0.00 N/A 0.014±0.00 N/A
ENSMUST00000177220 0.003±0.00 3.191±0.70 0.003±0.00 N/A 0.005±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NM CIL_0001NM_0002 CGP 17:85090726-85629302
CIL_0007KD CIL_0007KD_0002 UCNEbase 17:85172000-86036297
CIL_00083B CIL_00083B_0002 VISTA 17:85187468-85789670
CIL_0009CD CIL_0009CD_0002 VISTA 17:85226742-85830634
CIL_0009CC CIL_0009CC_0002 VISTA 17:85262619-85863333
CIL_0007WX CIL_0007WX_0002 VISTA 17:85278835-85879978

Gene Ontology

No GO terms available.

Homologs

No Homologs available.

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