| Source ID |
Type |
Tax ID |
Position |
| SIX2 |
UCNEbase |
7955 |
12:27024548-27103737  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007KD_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KD_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KD_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KD_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000068784' => 'S1 RNA binding domain 1',
'ENSG00000138083' => 'SIX homeobox 3',
'ENSG00000143919' => 'calmodulin-lysine N-methyltransferase',
'ENSG00000170577' => 'SIX homeobox 2',
'ENSG00000205054' => 'long intergenic non-protein coding RNA 1121',
'ENSG00000225156' => null,
'ENSG00000231054' => null,
'ENSG00000231156' => null,
'ENSG00000231848' => null,
'ENSG00000236502' => 'SIX3 antisense RNA 1',
'ENSG00000252896' => null,
'ENSG00000259439' => null,
'ENSG00000274520' => 'Six3os1 conserved region 1',
'ENSG00000274547' => 'Six3os1 conserved region 6',
'ENSG00000276048' => 'Six3os1 conserved region 5',
'ENSG00000276229' => 'Six3os1 conserved region 3',
'ENSG00000276670' => 'Six3os1 conserved region 7',
'ENSG00000277311' => 'Six3os1 conserved region 2',
'ENSG00000277809' => 'Six3os1 conserved region 4',
'ENSG00000278957' => null,
'ENSMUSG00000024134' => 'sine oculis-related homeobox 2',
'ENSMUSG00000024135' => 'S1 RNA binding domain 1',
'ENSMUSG00000038805' => 'sine oculis-related homeobox 3',
'ENSMUSG00000071037' => 'calmodulin-lysine N-methyltransferase',
'ENSMUSG00000093460' => 'SIX homeobox 3, opposite strand 1',
'ENSMUSG00000097803' => 'ribosomal protein L31, pseudogene 16',
'ENSMUSG00000098323' => 'predicted gene, 27275',
'ENSMUSG00000098438' => 'predicted gene 27178',
'ENSMUSG00000098775' => 'predicted gene, 27435',
'ENSMUSG00000098828' => 'predicted gene, 27283',
'ENSMUSG00000098920' => 'predicted gene, 27427',
'ENSMUSG00000099159' => 'predicted gene, 27801',
'ENSMUSG00000099317' => 'predicted gene, 27610',
'ENSMUSG00000099332' => 'predicted gene, 27502',
'ENSMUSG00000099635' => 'predicted gene 28528',
'ENSMUSG00000100345' => 'predicted gene 29418',
'ENSDARG00000007624' => 'GINS complex subunit 1 (Psf1 homolog)',
'ENSDARG00000028469' => 'Ribosomal protein S6 kinase',
'ENSDARG00000036282' => 'ribonuclease T2',
'ENSDARG00000058004' => 'sine oculis-related homeobox 2a',
'ENSDARG00000058008' => 'sine oculis homeobox homolog 3a',
'ENSDARG00000070049' => 'si:ch73-366i20.1',
'ENSDARG00000079827' => 'S1 RNA binding domain 1',
'ENSDARG00000080089' => null,
'ENSDARG00000089850' => 'myomesin 2',
'ENSDARG00000091099' => null,
'ENSDARG00000091900' => null,
'ENSDARG00000094301' => 'si:ch211-153i8.1',
'ENSDARG00000094925' => 'si:ch211-219o4.2',
'ENSDARG00000095224' => 'calmodulin-lysine N-methyltransferase',
'ENSDARG00000095483' => 'si:ch211-153i8.2'
),
'gene_name_arr' => array(
'ENSG00000068784' => 'SRBD1',
'ENSG00000138083' => 'SIX3',
'ENSG00000143919' => 'CAMKMT',
'ENSG00000170577' => 'SIX2',
'ENSG00000205054' => 'LINC01121',
'ENSG00000225156' => 'AC012354.6',
'ENSG00000231054' => 'AC009236.2',
'ENSG00000231156' => 'AC093702.1',
'ENSG00000231848' => 'AC012354.8',
'ENSG00000236502' => 'SIX3-AS1',
'ENSG00000252896' => 'AC067957.1',
'ENSG00000259439' => 'RP11-89K21.1',
'ENSG00000274520' => 'Six3os1_1',
'ENSG00000274547' => 'Six3os1_6',
'ENSG00000276048' => 'Six3os1_5',
'ENSG00000276229' => 'Six3os1_3',
'ENSG00000276670' => 'Six3os1_7',
'ENSG00000277311' => 'Six3os1_2',
'ENSG00000277809' => 'Six3os1_4',
'ENSG00000278957' => 'RP11-89K21.2',
'ENSMUSG00000024134' => 'Six2',
'ENSMUSG00000024135' => 'Srbd1',
'ENSMUSG00000038805' => 'Six3',
'ENSMUSG00000071037' => 'Camkmt',
'ENSMUSG00000093460' => 'Six3os1',
'ENSMUSG00000097803' => 'Rpl31-ps16',
'ENSMUSG00000098323' => 'Gm27275',
'ENSMUSG00000098438' => 'Gm27178',
'ENSMUSG00000098775' => 'Gm27435',
'ENSMUSG00000098828' => 'Gm27283',
'ENSMUSG00000098920' => 'Gm27427',
'ENSMUSG00000099159' => 'Gm27801',
'ENSMUSG00000099317' => 'Gm27610',
'ENSMUSG00000099332' => 'Gm27502',
'ENSMUSG00000099635' => 'RP24-68F22.7',
'ENSMUSG00000100345' => 'RP23-449G13.1',
'ENSDARG00000007624' => 'gins1',
'ENSDARG00000028469' => 'RPS6KA2',
'ENSDARG00000036282' => 'rnaset2',
'ENSDARG00000058004' => 'six2a',
'ENSDARG00000058008' => 'six3a',
'ENSDARG00000070049' => 'si:ch73-366i20.1',
'ENSDARG00000079827' => 'srbd1',
'ENSDARG00000080089' => 'AL929457.1',
'ENSDARG00000089850' => 'MYOM2 (2 of 3)',
'ENSDARG00000091099' => '',
'ENSDARG00000091900' => '',
'ENSDARG00000094301' => 'si:ch211-153i8.1',
'ENSDARG00000094925' => 'si:ch211-219o4.2',
'ENSDARG00000095224' => 'camkmt',
'ENSDARG00000095483' => 'si:ch211-153i8.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 33 => 'Brain',
(int) 74 => 'Breast',
(int) 92 => 'Colon',
(int) 104 => 'Heart',
(int) 135 => 'Kidney',
(int) 161 => 'Liver',
(int) 193 => 'Lung',
(int) 209 => 'Muscle',
(int) 232 => 'Ovary',
(int) 258 => 'Placenta',
(int) 282 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 91,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000263736' => array(
'start' => '45388680',
'end' => '45611281',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SRBD1-001'
),
'ENST00000461805' => array(
'start' => '45601922',
'end' => '45612165',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-005'
),
'ENST00000475073' => array(
'start' => '45418455',
'end' => '45549072',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-003'
),
'ENST00000490133' => array(
'start' => '45388776',
'end' => '45448095',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-002'
),
'ENST00000493649' => array(
'start' => '45546732',
'end' => '45568021',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-004'
),
'ENST00000260653' => array(
'start' => '44941898',
'end' => '44946077',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SIX3-001'
),
'ENST00000378494' => array(
'start' => '44361964',
'end' => '44772592',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-001'
),
'ENST00000402247' => array(
'start' => '44361950',
'end' => '44549785',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-008'
),
'ENST00000403853' => array(
'start' => '44361964',
'end' => '44457261',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-002'
),
'ENST00000407131' => array(
'start' => '44361956',
'end' => '44631714',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-010'
),
'ENST00000428929' => array(
'start' => '44372742',
'end' => '44392073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-007'
),
'ENST00000428993' => array(
'start' => '44372748',
'end' => '44550790',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CAMKMT-009'
),
'ENST00000454433' => array(
'start' => '44362105',
'end' => '44401145',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CAMKMT-005'
),
'ENST00000477623' => array(
'start' => '44369711',
'end' => '44392000',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CAMKMT-006'
),
'ENST00000477830' => array(
'start' => '44676594',
'end' => '44743657',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CAMKMT-011'
),
'ENST00000613618' => array(
'start' => '44704285',
'end' => '44772113',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-201'
),
'ENST00000303077' => array(
'start' => '45005161',
'end' => '45009430',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SIX2-001'
),
'ENST00000378479' => array(
'start' => '45174344',
'end' => '45254941',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-001'
),
'ENST00000413669' => array(
'start' => '45174340',
'end' => '45175211',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-006'
),
'ENST00000427020' => array(
'start' => '45164870',
'end' => '45192265',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-003'
),
'ENST00000430650' => array(
'start' => '45192179',
'end' => '45323295',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-004'
),
'ENST00000454673' => array(
'start' => '45187170',
'end' => '45192285',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LINC01121-002'
),
'ENST00000425325' => array(
'start' => '44954664',
'end' => '44968762',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC012354.6-001'
),
'ENST00000442821' => array(
'start' => '45168583',
'end' => '45169414',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC009236.2-001'
),
'ENST00000423433' => array(
'start' => '45013214',
'end' => '45013668',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC093702.1-001'
),
'ENST00000423051' => array(
'start' => '44996413',
'end' => '44996873',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC012354.8-001'
),
'ENST00000419364' => array(
'start' => '44940154',
'end' => '44941873',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'SIX3-AS1-001'
),
'ENST00000456467' => array(
'start' => '44940584',
'end' => '44941494',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'SIX3-AS1-002'
),
'ENST00000517087' => array(
'start' => '44782046',
'end' => '44782130',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC067957.1-201'
),
'ENST00000430847' => array(
'start' => '44929977',
'end' => '44935359',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-004'
),
'ENST00000432125' => array(
'start' => '44923035',
'end' => '44935644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-005'
),
'ENST00000437916' => array(
'start' => '44921077',
'end' => '44939199',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-001'
),
'ENST00000444871' => array(
'start' => '44931122',
'end' => '44938888',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-003'
),
'ENST00000560399' => array(
'start' => '44921077',
'end' => '44923039',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-002'
),
'ENST00000620900' => array(
'start' => '44932320',
'end' => '44932406',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_1.1-201'
),
'ENST00000620790' => array(
'start' => '44938833',
'end' => '44939028',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_6.1-201'
),
'ENST00000611000' => array(
'start' => '44937426',
'end' => '44937696',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_5.1-201'
),
'ENST00000622214' => array(
'start' => '44935294',
'end' => '44935368',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_3.1-201'
),
'ENST00000621512' => array(
'start' => '44940045',
'end' => '44940245',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_7.1-201'
),
'ENST00000616963' => array(
'start' => '44934055',
'end' => '44934271',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_2.1-201'
),
'ENST00000615706' => array(
'start' => '44935585',
'end' => '44935908',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_4.1-201'
),
'ENST00000623734' => array(
'start' => '44927914',
'end' => '44928396',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-89K21.2-001'
),
'ENSMUST00000024947' => array(
'start' => '85684282',
'end' => '85688254',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six2-201'
),
'ENSMUST00000163568' => array(
'start' => '85684277',
'end' => '85688274',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six2-001'
),
'ENSMUST00000095187' => array(
'start' => '85984665',
'end' => '86145175',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Srbd1-201'
),
'ENSMUST00000162695' => array(
'start' => '85621031',
'end' => '85629302',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six3-004'
),
'ENSMUST00000175898' => array(
'start' => '85613608',
'end' => '85625222',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six3-002'
),
'ENSMUST00000176081' => array(
'start' => '85620834',
'end' => '85626191',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six3-001'
),
'ENSMUST00000095188' => array(
'start' => '85090726',
'end' => '85458139',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Camkmt-201'
),
'ENSMUST00000159030' => array(
'start' => '85610493',
'end' => '85618275',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-013'
),
'ENSMUST00000160691' => array(
'start' => '85613682',
'end' => '85618358',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-011'
),
'ENSMUST00000161146' => array(
'start' => '85601933',
'end' => '85618372',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-006'
),
'ENSMUST00000161688' => array(
'start' => '85612873',
'end' => '85618275',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-012'
),
'ENSMUST00000175913' => array(
'start' => '85613681',
'end' => '85618073',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-008'
),
'ENSMUST00000175921' => array(
'start' => '85600651',
'end' => '85615348',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-009'
),
'ENSMUST00000176375' => array(
'start' => '85613201',
'end' => '85616246',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-007'
),
'ENSMUST00000176432' => array(
'start' => '85611620',
'end' => '85618221',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-005'
),
'ENSMUST00000176556' => array(
'start' => '85611238',
'end' => '85618385',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Six3os1-002'
),
'ENSMUST00000176917' => array(
'start' => '85609551',
'end' => '85618340',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-010'
),
'ENSMUST00000176958' => array(
'start' => '85607360',
'end' => '85618365',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-003'
),
'ENSMUST00000177220' => array(
'start' => '85607927',
'end' => '85618398',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-001'
),
'ENSMUST00000177487' => array(
'start' => '85611620',
'end' => '85618223',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-004'
),
'ENSMUST00000181130' => array(
'start' => '85498633',
'end' => '85499008',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl31-ps16-001'
),
'ENSMUST00000184318' => array(
'start' => '85616702',
'end' => '85616973',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27275-201'
),
'ENSMUST00000184962' => array(
'start' => '85599533',
'end' => '85599872',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm27178-001'
),
'ENSMUST00000183588' => array(
'start' => '85611676',
'end' => '85611763',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27435-201'
),
'ENSMUST00000184853' => array(
'start' => '85614960',
'end' => '85615282',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27283-201'
),
'ENSMUST00000185134' => array(
'start' => '85619225',
'end' => '85619417',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27427-201'
),
'ENSMUST00000184174' => array(
'start' => '85613382',
'end' => '85613604',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27801-201'
),
'ENSMUST00000184026' => array(
'start' => '85614662',
'end' => '85614735',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27610-201'
),
'ENSMUST00000183495' => array(
'start' => '85618067',
'end' => '85618265',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27502-201'
),
'ENSMUST00000188560' => array(
'start' => '85619326',
'end' => '85621001',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP24-68F22.7-001'
),
'ENSMUST00000186162' => array(
'start' => '85796218',
'end' => '85824044',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-449G13.1-001'
),
'ENSDART00000022051' => array(
'start' => '9412733',
'end' => '9418548',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'gins1-201'
),
'ENSDART00000044705' => array(
'start' => '9425931',
'end' => '9496258',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPS6KA2-201'
),
'ENSDART00000126780' => array(
'start' => '9518928',
'end' => '9533143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rnaset2-201'
),
'ENSDART00000128675' => array(
'start' => '9521448',
'end' => '9533752',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rnaset2-202'
),
'ENSDART00000080805' => array(
'start' => '9797891',
'end' => '9800761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'six2a-001'
),
'ENSDART00000080808' => array(
'start' => '9823203',
'end' => '9826579',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'six3a-001'
),
'ENSDART00000102497' => array(
'start' => '10004473',
'end' => '10006685',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch73-366i20.1-201'
),
'ENSDART00000110035' => array(
'start' => '9589432',
'end' => '9594397',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'srbd1-201'
),
'ENSDART00000138228' => array(
'start' => '9589545',
'end' => '9594699',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'srbd1-001'
),
'ENSDART00000117262' => array(
'start' => '9973979',
'end' => '9974068',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL929457.1-201'
),
'ENSDART00000125593' => array(
'start' => '9549226',
'end' => '9580261',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MYOM2 (2 of 3)-201'
),
'ENSDART00000126475' => array(
'start' => '9539138',
'end' => '9580225',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000135000' => array(
'start' => '10060116',
'end' => '10185848',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000140235' => array(
'start' => '9729430',
'end' => '9867266',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'si:ch211-153i8.1-001'
),
'ENSDART00000134629' => array(
'start' => '9663047',
'end' => '9684131',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'si:ch211-219o4.2-001'
),
'ENSDART00000133968' => array(
'start' => '9925688',
'end' => '9996672',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'camkmt-001'
),
'ENSDART00000132231' => array(
'start' => '9898915',
'end' => '9912076',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-153i8.2-001'
),
'ENSDART00000156763' => array(
'start' => '9852898',
'end' => '9911445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-153i8.2-002'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KD_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KD_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KD_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KD_0001' => array(
'genes_in_region' => array(
'ENSG00000068784' => array(
[maximum depth reached]
),
'ENSG00000138083' => array(
[maximum depth reached]
),
'ENSG00000143919' => array(
[maximum depth reached]
),
'ENSG00000170577' => array(
[maximum depth reached]
),
'ENSG00000205054' => array(
[maximum depth reached]
),
'ENSG00000225156' => array(
[maximum depth reached]
),
'ENSG00000231054' => array(
[maximum depth reached]
),
'ENSG00000231156' => array(
[maximum depth reached]
),
'ENSG00000231848' => array(
[maximum depth reached]
),
'ENSG00000236502' => array(
[maximum depth reached]
),
'ENSG00000252896' => array(
[maximum depth reached]
),
'ENSG00000259439' => array(
[maximum depth reached]
),
'ENSG00000274520' => array(
[maximum depth reached]
),
'ENSG00000278957' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Adipose',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Kidney',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Ovary',
(int) 41 => 'Testis',
(int) 42 => 'Heart',
(int) 43 => 'Liver',
(int) 44 => 'Ovary',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Breast',
(int) 48 => 'Ovary',
(int) 49 => 'Adipose',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Lung',
(int) 56 => 'Muscle',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Colon',
(int) 66 => 'Heart',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Lung',
(int) 75 => 'Ovary',
(int) 76 => 'Heart',
(int) 77 => 'Ovary',
(int) 78 => 'Adipose',
(int) 79 => 'Heart',
(int) 80 => 'Liver',
(int) 81 => 'Placenta',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Adrenal',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Colon',
(int) 89 => 'Heart',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Lung',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Placenta',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Heart',
(int) 100 => 'Testis',
(int) 101 => 'Brain',
(int) 102 => 'Breast',
(int) 103 => 'Lung',
(int) 104 => 'Muscle',
(int) 105 => 'Testis',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Kidney',
(int) 109 => 'Muscle',
(int) 110 => 'Testis',
(int) 111 => 'Brain',
(int) 112 => 'Testis',
(int) 113 => 'Brain',
(int) 114 => 'Ovary',
(int) 115 => 'Testis',
(int) 116 => 'Adrenal',
(int) 117 => 'Ovary',
(int) 118 => 'Testis',
(int) 119 => 'Brain',
(int) 120 => 'Ovary',
(int) 121 => 'Placenta',
(int) 122 => 'Breast',
(int) 123 => 'Kidney',
(int) 124 => 'Ovary',
(int) 125 => 'Testis',
(int) 126 => 'Kidney',
(int) 127 => 'Ovary',
(int) 128 => 'Testis',
(int) 129 => 'Brain',
(int) 130 => 'Ovary',
(int) 131 => 'Testis',
(int) 132 => 'Breast',
(int) 133 => 'Ovary'
)
),
'CIL_0007KD_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000024134' => array(
[maximum depth reached]
),
'ENSMUSG00000024135' => array(
[maximum depth reached]
),
'ENSMUSG00000038805' => array(
[maximum depth reached]
),
'ENSMUSG00000071037' => array(
[maximum depth reached]
),
'ENSMUSG00000093460' => array(
[maximum depth reached]
),
'ENSMUSG00000097803' => array(
[maximum depth reached]
),
'ENSMUSG00000098438' => array(
[maximum depth reached]
),
'ENSMUSG00000099159' => array(
[maximum depth reached]
),
'ENSMUSG00000099332' => array(
[maximum depth reached]
),
'ENSMUSG00000099635' => array(
[maximum depth reached]
),
'ENSMUSG00000100345' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Breast',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Testis',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Heart',
(int) 46 => 'Liver',
(int) 47 => 'Lung',
(int) 48 => 'Placenta',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Liver',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Liver',
(int) 70 => 'Testis',
(int) 71 => 'Placenta',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Liver',
(int) 75 => 'Placenta',
(int) 76 => 'Liver',
(int) 77 => 'Brain',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Placenta',
(int) 81 => 'Liver',
(int) 82 => 'Placenta',
(int) 83 => 'Bladder',
(int) 84 => 'Brain',
(int) 85 => 'Liver',
(int) 86 => 'Placenta',
(int) 87 => 'Adipose',
(int) 88 => 'Bladder',
(int) 89 => 'Brain',
(int) 90 => 'Breast',
(int) 91 => 'Colon',
(int) 92 => 'Heart',
(int) 93 => 'Kidney',
(int) 94 => 'Liver',
(int) 95 => 'Muscle',
(int) 96 => 'Ovary',
(int) 97 => 'Placenta',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Brain',
(int) 101 => 'Testis',
(int) 102 => 'Placenta',
(int) 103 => 'Bladder',
(int) 104 => 'Breast',
(int) 105 => 'Lung',
(int) 106 => 'Ovary',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Brain',
(int) 110 => 'Liver',
(int) 111 => 'Muscle',
(int) 112 => 'Placenta'
)
),
'CIL_0007KD_0004' => array(
'genes_in_region' => array(
'ENSDARG00000007624' => array(
[maximum depth reached]
),
'ENSDARG00000028469' => array(
[maximum depth reached]
),
'ENSDARG00000036282' => array(
[maximum depth reached]
),
'ENSDARG00000058004' => array(
[maximum depth reached]
),
'ENSDARG00000058008' => array(
[maximum depth reached]
),
'ENSDARG00000079827' => array(
[maximum depth reached]
),
'ENSDARG00000080089' => array(
[maximum depth reached]
),
'ENSDARG00000089850' => array(
[maximum depth reached]
),
'ENSDARG00000091099' => array(
[maximum depth reached]
),
'ENSDARG00000091900' => array(
[maximum depth reached]
),
'ENSDARG00000094301' => array(
[maximum depth reached]
),
'ENSDARG00000094925' => array(
[maximum depth reached]
),
'ENSDARG00000095224' => array(
[maximum depth reached]
),
'ENSDARG00000095483' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Muscle',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Liver',
(int) 11 => 'Brain',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Muscle',
(int) 20 => 'Brain',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Muscle',
(int) 25 => 'Brain',
(int) 26 => 'Heart',
(int) 27 => 'Muscle',
(int) 28 => 'Brain',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Brain',
(int) 32 => 'Heart',
(int) 33 => 'Muscle',
(int) 34 => 'Brain',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Muscle',
(int) 39 => 'Brain',
(int) 40 => 'Heart',
(int) 41 => 'Liver',
(int) 42 => 'Brain',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Muscle',
(int) 47 => 'Kidney',
(int) 48 => 'Muscle',
(int) 49 => 'Brain',
(int) 50 => 'Heart',
(int) 51 => 'Liver',
(int) 52 => 'Brain',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Muscle',
(int) 57 => 'Brain',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Brain',
(int) 61 => 'Kidney'
)
)
)
$gene_desc_arr = array(
'ENSG00000068784' => 'S1 RNA binding domain 1',
'ENSG00000138083' => 'SIX homeobox 3',
'ENSG00000143919' => 'calmodulin-lysine N-methyltransferase',
'ENSG00000170577' => 'SIX homeobox 2',
'ENSG00000205054' => 'long intergenic non-protein coding RNA 1121',
'ENSG00000225156' => null,
'ENSG00000231054' => null,
'ENSG00000231156' => null,
'ENSG00000231848' => null,
'ENSG00000236502' => 'SIX3 antisense RNA 1',
'ENSG00000252896' => null,
'ENSG00000259439' => null,
'ENSG00000274520' => 'Six3os1 conserved region 1',
'ENSG00000274547' => 'Six3os1 conserved region 6',
'ENSG00000276048' => 'Six3os1 conserved region 5',
'ENSG00000276229' => 'Six3os1 conserved region 3',
'ENSG00000276670' => 'Six3os1 conserved region 7',
'ENSG00000277311' => 'Six3os1 conserved region 2',
'ENSG00000277809' => 'Six3os1 conserved region 4',
'ENSG00000278957' => null,
'ENSMUSG00000024134' => 'sine oculis-related homeobox 2',
'ENSMUSG00000024135' => 'S1 RNA binding domain 1',
'ENSMUSG00000038805' => 'sine oculis-related homeobox 3',
'ENSMUSG00000071037' => 'calmodulin-lysine N-methyltransferase',
'ENSMUSG00000093460' => 'SIX homeobox 3, opposite strand 1',
'ENSMUSG00000097803' => 'ribosomal protein L31, pseudogene 16',
'ENSMUSG00000098323' => 'predicted gene, 27275',
'ENSMUSG00000098438' => 'predicted gene 27178',
'ENSMUSG00000098775' => 'predicted gene, 27435',
'ENSMUSG00000098828' => 'predicted gene, 27283',
'ENSMUSG00000098920' => 'predicted gene, 27427',
'ENSMUSG00000099159' => 'predicted gene, 27801',
'ENSMUSG00000099317' => 'predicted gene, 27610',
'ENSMUSG00000099332' => 'predicted gene, 27502',
'ENSMUSG00000099635' => 'predicted gene 28528',
'ENSMUSG00000100345' => 'predicted gene 29418',
'ENSDARG00000007624' => 'GINS complex subunit 1 (Psf1 homolog)',
'ENSDARG00000028469' => 'Ribosomal protein S6 kinase',
'ENSDARG00000036282' => 'ribonuclease T2',
'ENSDARG00000058004' => 'sine oculis-related homeobox 2a',
'ENSDARG00000058008' => 'sine oculis homeobox homolog 3a',
'ENSDARG00000070049' => 'si:ch73-366i20.1',
'ENSDARG00000079827' => 'S1 RNA binding domain 1',
'ENSDARG00000080089' => null,
'ENSDARG00000089850' => 'myomesin 2',
'ENSDARG00000091099' => null,
'ENSDARG00000091900' => null,
'ENSDARG00000094301' => 'si:ch211-153i8.1',
'ENSDARG00000094925' => 'si:ch211-219o4.2',
'ENSDARG00000095224' => 'calmodulin-lysine N-methyltransferase',
'ENSDARG00000095483' => 'si:ch211-153i8.2'
)
$gene_name_arr = array(
'ENSG00000068784' => 'SRBD1',
'ENSG00000138083' => 'SIX3',
'ENSG00000143919' => 'CAMKMT',
'ENSG00000170577' => 'SIX2',
'ENSG00000205054' => 'LINC01121',
'ENSG00000225156' => 'AC012354.6',
'ENSG00000231054' => 'AC009236.2',
'ENSG00000231156' => 'AC093702.1',
'ENSG00000231848' => 'AC012354.8',
'ENSG00000236502' => 'SIX3-AS1',
'ENSG00000252896' => 'AC067957.1',
'ENSG00000259439' => 'RP11-89K21.1',
'ENSG00000274520' => 'Six3os1_1',
'ENSG00000274547' => 'Six3os1_6',
'ENSG00000276048' => 'Six3os1_5',
'ENSG00000276229' => 'Six3os1_3',
'ENSG00000276670' => 'Six3os1_7',
'ENSG00000277311' => 'Six3os1_2',
'ENSG00000277809' => 'Six3os1_4',
'ENSG00000278957' => 'RP11-89K21.2',
'ENSMUSG00000024134' => 'Six2',
'ENSMUSG00000024135' => 'Srbd1',
'ENSMUSG00000038805' => 'Six3',
'ENSMUSG00000071037' => 'Camkmt',
'ENSMUSG00000093460' => 'Six3os1',
'ENSMUSG00000097803' => 'Rpl31-ps16',
'ENSMUSG00000098323' => 'Gm27275',
'ENSMUSG00000098438' => 'Gm27178',
'ENSMUSG00000098775' => 'Gm27435',
'ENSMUSG00000098828' => 'Gm27283',
'ENSMUSG00000098920' => 'Gm27427',
'ENSMUSG00000099159' => 'Gm27801',
'ENSMUSG00000099317' => 'Gm27610',
'ENSMUSG00000099332' => 'Gm27502',
'ENSMUSG00000099635' => 'RP24-68F22.7',
'ENSMUSG00000100345' => 'RP23-449G13.1',
'ENSDARG00000007624' => 'gins1',
'ENSDARG00000028469' => 'RPS6KA2',
'ENSDARG00000036282' => 'rnaset2',
'ENSDARG00000058004' => 'six2a',
'ENSDARG00000058008' => 'six3a',
'ENSDARG00000070049' => 'si:ch73-366i20.1',
'ENSDARG00000079827' => 'srbd1',
'ENSDARG00000080089' => 'AL929457.1',
'ENSDARG00000089850' => 'MYOM2 (2 of 3)',
'ENSDARG00000091099' => '',
'ENSDARG00000091900' => '',
'ENSDARG00000094301' => 'si:ch211-153i8.1',
'ENSDARG00000094925' => 'si:ch211-219o4.2',
'ENSDARG00000095224' => 'camkmt',
'ENSDARG00000095483' => 'si:ch211-153i8.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KD_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '44450120',
'seq_end' => '45456944',
'region_length' => '1006824',
'region_type' => 'UCNEbase',
'el_id' => 'SIX2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KD_0002',
'tax_id' => '10090',
'chromosome' => '17',
'seq_start' => '85172000',
'seq_end' => '86036297',
'region_length' => '864297',
'region_type' => 'UCNEbase',
'el_id' => 'SIX2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KD_0003',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '27024548',
'seq_end' => '27103737',
'region_length' => '79189',
'region_type' => 'UCNEbase',
'el_id' => 'SIX2'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KD_0004',
'tax_id' => '7955',
'chromosome' => '13',
'seq_start' => '9331455',
'seq_end' => '10073447',
'region_length' => '741992',
'region_type' => 'UCNEbase',
'el_id' => 'SIX2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 33 => 'Brain',
(int) 74 => 'Breast',
(int) 92 => 'Colon',
(int) 104 => 'Heart',
(int) 135 => 'Kidney',
(int) 161 => 'Liver',
(int) 193 => 'Lung',
(int) 209 => 'Muscle',
(int) 232 => 'Ovary',
(int) 258 => 'Placenta',
(int) 282 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 91
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000263736' => array(
'start' => '45388680',
'end' => '45611281',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SRBD1-001'
),
'ENST00000461805' => array(
'start' => '45601922',
'end' => '45612165',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-005'
),
'ENST00000475073' => array(
'start' => '45418455',
'end' => '45549072',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-003'
),
'ENST00000490133' => array(
'start' => '45388776',
'end' => '45448095',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-002'
),
'ENST00000493649' => array(
'start' => '45546732',
'end' => '45568021',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-004'
),
'ENST00000260653' => array(
'start' => '44941898',
'end' => '44946077',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SIX3-001'
),
'ENST00000378494' => array(
'start' => '44361964',
'end' => '44772592',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-001'
),
'ENST00000402247' => array(
'start' => '44361950',
'end' => '44549785',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-008'
),
'ENST00000403853' => array(
'start' => '44361964',
'end' => '44457261',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-002'
),
'ENST00000407131' => array(
'start' => '44361956',
'end' => '44631714',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-010'
),
'ENST00000428929' => array(
'start' => '44372742',
'end' => '44392073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-007'
),
'ENST00000428993' => array(
'start' => '44372748',
'end' => '44550790',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CAMKMT-009'
),
'ENST00000454433' => array(
'start' => '44362105',
'end' => '44401145',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CAMKMT-005'
),
'ENST00000477623' => array(
'start' => '44369711',
'end' => '44392000',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CAMKMT-006'
),
'ENST00000477830' => array(
'start' => '44676594',
'end' => '44743657',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CAMKMT-011'
),
'ENST00000613618' => array(
'start' => '44704285',
'end' => '44772113',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-201'
),
'ENST00000303077' => array(
'start' => '45005161',
'end' => '45009430',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SIX2-001'
),
'ENST00000378479' => array(
'start' => '45174344',
'end' => '45254941',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-001'
),
'ENST00000413669' => array(
'start' => '45174340',
'end' => '45175211',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-006'
),
'ENST00000427020' => array(
'start' => '45164870',
'end' => '45192265',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-003'
),
'ENST00000430650' => array(
'start' => '45192179',
'end' => '45323295',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-004'
),
'ENST00000454673' => array(
'start' => '45187170',
'end' => '45192285',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LINC01121-002'
),
'ENST00000425325' => array(
'start' => '44954664',
'end' => '44968762',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC012354.6-001'
),
'ENST00000442821' => array(
'start' => '45168583',
'end' => '45169414',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC009236.2-001'
),
'ENST00000423433' => array(
'start' => '45013214',
'end' => '45013668',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC093702.1-001'
),
'ENST00000423051' => array(
'start' => '44996413',
'end' => '44996873',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC012354.8-001'
),
'ENST00000419364' => array(
'start' => '44940154',
'end' => '44941873',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'SIX3-AS1-001'
),
'ENST00000456467' => array(
'start' => '44940584',
'end' => '44941494',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'SIX3-AS1-002'
),
'ENST00000517087' => array(
'start' => '44782046',
'end' => '44782130',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC067957.1-201'
),
'ENST00000430847' => array(
'start' => '44929977',
'end' => '44935359',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-004'
),
'ENST00000432125' => array(
'start' => '44923035',
'end' => '44935644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-005'
),
'ENST00000437916' => array(
'start' => '44921077',
'end' => '44939199',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-001'
),
'ENST00000444871' => array(
'start' => '44931122',
'end' => '44938888',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-003'
),
'ENST00000560399' => array(
'start' => '44921077',
'end' => '44923039',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-002'
),
'ENST00000620900' => array(
'start' => '44932320',
'end' => '44932406',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_1.1-201'
),
'ENST00000620790' => array(
'start' => '44938833',
'end' => '44939028',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_6.1-201'
),
'ENST00000611000' => array(
'start' => '44937426',
'end' => '44937696',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_5.1-201'
),
'ENST00000622214' => array(
'start' => '44935294',
'end' => '44935368',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_3.1-201'
),
'ENST00000621512' => array(
'start' => '44940045',
'end' => '44940245',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_7.1-201'
),
'ENST00000616963' => array(
'start' => '44934055',
'end' => '44934271',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_2.1-201'
),
'ENST00000615706' => array(
'start' => '44935585',
'end' => '44935908',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_4.1-201'
),
'ENST00000623734' => array(
'start' => '44927914',
'end' => '44928396',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-89K21.2-001'
),
'ENSMUST00000024947' => array(
'start' => '85684282',
'end' => '85688254',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six2-201'
),
'ENSMUST00000163568' => array(
'start' => '85684277',
'end' => '85688274',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six2-001'
),
'ENSMUST00000095187' => array(
'start' => '85984665',
'end' => '86145175',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Srbd1-201'
),
'ENSMUST00000162695' => array(
'start' => '85621031',
'end' => '85629302',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six3-004'
),
'ENSMUST00000175898' => array(
'start' => '85613608',
'end' => '85625222',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six3-002'
),
'ENSMUST00000176081' => array(
'start' => '85620834',
'end' => '85626191',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six3-001'
),
'ENSMUST00000095188' => array(
'start' => '85090726',
'end' => '85458139',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Camkmt-201'
),
'ENSMUST00000159030' => array(
'start' => '85610493',
'end' => '85618275',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-013'
),
'ENSMUST00000160691' => array(
'start' => '85613682',
'end' => '85618358',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-011'
),
'ENSMUST00000161146' => array(
'start' => '85601933',
'end' => '85618372',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-006'
),
'ENSMUST00000161688' => array(
'start' => '85612873',
'end' => '85618275',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-012'
),
'ENSMUST00000175913' => array(
'start' => '85613681',
'end' => '85618073',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-008'
),
'ENSMUST00000175921' => array(
'start' => '85600651',
'end' => '85615348',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-009'
),
'ENSMUST00000176375' => array(
'start' => '85613201',
'end' => '85616246',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-007'
),
'ENSMUST00000176432' => array(
'start' => '85611620',
'end' => '85618221',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-005'
),
'ENSMUST00000176556' => array(
'start' => '85611238',
'end' => '85618385',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Six3os1-002'
),
'ENSMUST00000176917' => array(
'start' => '85609551',
'end' => '85618340',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-010'
),
'ENSMUST00000176958' => array(
'start' => '85607360',
'end' => '85618365',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-003'
),
'ENSMUST00000177220' => array(
'start' => '85607927',
'end' => '85618398',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-001'
),
'ENSMUST00000177487' => array(
'start' => '85611620',
'end' => '85618223',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-004'
),
'ENSMUST00000181130' => array(
'start' => '85498633',
'end' => '85499008',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl31-ps16-001'
),
'ENSMUST00000184318' => array(
'start' => '85616702',
'end' => '85616973',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27275-201'
),
'ENSMUST00000184962' => array(
'start' => '85599533',
'end' => '85599872',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm27178-001'
),
'ENSMUST00000183588' => array(
'start' => '85611676',
'end' => '85611763',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27435-201'
),
'ENSMUST00000184853' => array(
'start' => '85614960',
'end' => '85615282',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27283-201'
),
'ENSMUST00000185134' => array(
'start' => '85619225',
'end' => '85619417',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27427-201'
),
'ENSMUST00000184174' => array(
'start' => '85613382',
'end' => '85613604',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27801-201'
),
'ENSMUST00000184026' => array(
'start' => '85614662',
'end' => '85614735',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27610-201'
),
'ENSMUST00000183495' => array(
'start' => '85618067',
'end' => '85618265',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27502-201'
),
'ENSMUST00000188560' => array(
'start' => '85619326',
'end' => '85621001',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP24-68F22.7-001'
),
'ENSMUST00000186162' => array(
'start' => '85796218',
'end' => '85824044',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-449G13.1-001'
),
'ENSDART00000022051' => array(
'start' => '9412733',
'end' => '9418548',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'gins1-201'
),
'ENSDART00000044705' => array(
'start' => '9425931',
'end' => '9496258',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPS6KA2-201'
),
'ENSDART00000126780' => array(
'start' => '9518928',
'end' => '9533143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rnaset2-201'
),
'ENSDART00000128675' => array(
'start' => '9521448',
'end' => '9533752',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rnaset2-202'
),
'ENSDART00000080805' => array(
'start' => '9797891',
'end' => '9800761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'six2a-001'
),
'ENSDART00000080808' => array(
'start' => '9823203',
'end' => '9826579',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'six3a-001'
),
'ENSDART00000102497' => array(
'start' => '10004473',
'end' => '10006685',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch73-366i20.1-201'
),
'ENSDART00000110035' => array(
'start' => '9589432',
'end' => '9594397',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'srbd1-201'
),
'ENSDART00000138228' => array(
'start' => '9589545',
'end' => '9594699',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'srbd1-001'
),
'ENSDART00000117262' => array(
'start' => '9973979',
'end' => '9974068',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL929457.1-201'
),
'ENSDART00000125593' => array(
'start' => '9549226',
'end' => '9580261',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MYOM2 (2 of 3)-201'
),
'ENSDART00000126475' => array(
'start' => '9539138',
'end' => '9580225',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000135000' => array(
'start' => '10060116',
'end' => '10185848',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000140235' => array(
'start' => '9729430',
'end' => '9867266',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'si:ch211-153i8.1-001'
),
'ENSDART00000134629' => array(
'start' => '9663047',
'end' => '9684131',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'si:ch211-219o4.2-001'
),
'ENSDART00000133968' => array(
'start' => '9925688',
'end' => '9996672',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'camkmt-001'
),
'ENSDART00000132231' => array(
'start' => '9898915',
'end' => '9912076',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-153i8.2-001'
),
'ENSDART00000156763' => array(
'start' => '9852898',
'end' => '9911445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-153i8.2-002'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KD_0001' => array(
'genes_in_region' => array(
'ENSG00000068784' => array(
[maximum depth reached]
),
'ENSG00000138083' => array(
[maximum depth reached]
),
'ENSG00000143919' => array(
[maximum depth reached]
),
'ENSG00000170577' => array(
[maximum depth reached]
),
'ENSG00000205054' => array(
[maximum depth reached]
),
'ENSG00000225156' => array(
[maximum depth reached]
),
'ENSG00000231054' => array(
[maximum depth reached]
),
'ENSG00000231156' => array(
[maximum depth reached]
),
'ENSG00000231848' => array(
[maximum depth reached]
),
'ENSG00000236502' => array(
[maximum depth reached]
),
'ENSG00000252896' => array(
[maximum depth reached]
),
'ENSG00000259439' => array(
[maximum depth reached]
),
'ENSG00000274520' => array(
[maximum depth reached]
),
'ENSG00000278957' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Adipose',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Kidney',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Ovary',
(int) 41 => 'Testis',
(int) 42 => 'Heart',
(int) 43 => 'Liver',
(int) 44 => 'Ovary',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Breast',
(int) 48 => 'Ovary',
(int) 49 => 'Adipose',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Lung',
(int) 56 => 'Muscle',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Colon',
(int) 66 => 'Heart',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Lung',
(int) 75 => 'Ovary',
(int) 76 => 'Heart',
(int) 77 => 'Ovary',
(int) 78 => 'Adipose',
(int) 79 => 'Heart',
(int) 80 => 'Liver',
(int) 81 => 'Placenta',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Adrenal',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Colon',
(int) 89 => 'Heart',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Lung',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Placenta',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Heart',
(int) 100 => 'Testis',
(int) 101 => 'Brain',
(int) 102 => 'Breast',
(int) 103 => 'Lung',
(int) 104 => 'Muscle',
(int) 105 => 'Testis',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Kidney',
(int) 109 => 'Muscle',
(int) 110 => 'Testis',
(int) 111 => 'Brain',
(int) 112 => 'Testis',
(int) 113 => 'Brain',
(int) 114 => 'Ovary',
(int) 115 => 'Testis',
(int) 116 => 'Adrenal',
(int) 117 => 'Ovary',
(int) 118 => 'Testis',
(int) 119 => 'Brain',
(int) 120 => 'Ovary',
(int) 121 => 'Placenta',
(int) 122 => 'Breast',
(int) 123 => 'Kidney',
(int) 124 => 'Ovary',
(int) 125 => 'Testis',
(int) 126 => 'Kidney',
(int) 127 => 'Ovary',
(int) 128 => 'Testis',
(int) 129 => 'Brain',
(int) 130 => 'Ovary',
(int) 131 => 'Testis',
(int) 132 => 'Breast',
(int) 133 => 'Ovary'
)
),
'CIL_0007KD_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000024134' => array(
[maximum depth reached]
),
'ENSMUSG00000024135' => array(
[maximum depth reached]
),
'ENSMUSG00000038805' => array(
[maximum depth reached]
),
'ENSMUSG00000071037' => array(
[maximum depth reached]
),
'ENSMUSG00000093460' => array(
[maximum depth reached]
),
'ENSMUSG00000097803' => array(
[maximum depth reached]
),
'ENSMUSG00000098438' => array(
[maximum depth reached]
),
'ENSMUSG00000099159' => array(
[maximum depth reached]
),
'ENSMUSG00000099332' => array(
[maximum depth reached]
),
'ENSMUSG00000099635' => array(
[maximum depth reached]
),
'ENSMUSG00000100345' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Breast',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Testis',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Heart',
(int) 46 => 'Liver',
(int) 47 => 'Lung',
(int) 48 => 'Placenta',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Liver',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Liver',
(int) 70 => 'Testis',
(int) 71 => 'Placenta',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Liver',
(int) 75 => 'Placenta',
(int) 76 => 'Liver',
(int) 77 => 'Brain',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Placenta',
(int) 81 => 'Liver',
(int) 82 => 'Placenta',
(int) 83 => 'Bladder',
(int) 84 => 'Brain',
(int) 85 => 'Liver',
(int) 86 => 'Placenta',
(int) 87 => 'Adipose',
(int) 88 => 'Bladder',
(int) 89 => 'Brain',
(int) 90 => 'Breast',
(int) 91 => 'Colon',
(int) 92 => 'Heart',
(int) 93 => 'Kidney',
(int) 94 => 'Liver',
(int) 95 => 'Muscle',
(int) 96 => 'Ovary',
(int) 97 => 'Placenta',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Brain',
(int) 101 => 'Testis',
(int) 102 => 'Placenta',
(int) 103 => 'Bladder',
(int) 104 => 'Breast',
(int) 105 => 'Lung',
(int) 106 => 'Ovary',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Brain',
(int) 110 => 'Liver',
(int) 111 => 'Muscle',
(int) 112 => 'Placenta'
)
),
'CIL_0007KD_0004' => array(
'genes_in_region' => array(
'ENSDARG00000007624' => array(
[maximum depth reached]
),
'ENSDARG00000028469' => array(
[maximum depth reached]
),
'ENSDARG00000036282' => array(
[maximum depth reached]
),
'ENSDARG00000058004' => array(
[maximum depth reached]
),
'ENSDARG00000058008' => array(
[maximum depth reached]
),
'ENSDARG00000079827' => array(
[maximum depth reached]
),
'ENSDARG00000080089' => array(
[maximum depth reached]
),
'ENSDARG00000089850' => array(
[maximum depth reached]
),
'ENSDARG00000091099' => array(
[maximum depth reached]
),
'ENSDARG00000091900' => array(
[maximum depth reached]
),
'ENSDARG00000094301' => array(
[maximum depth reached]
),
'ENSDARG00000094925' => array(
[maximum depth reached]
),
'ENSDARG00000095224' => array(
[maximum depth reached]
),
'ENSDARG00000095483' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Muscle',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Liver',
(int) 11 => 'Brain',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Muscle',
(int) 20 => 'Brain',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Muscle',
(int) 25 => 'Brain',
(int) 26 => 'Heart',
(int) 27 => 'Muscle',
(int) 28 => 'Brain',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Brain',
(int) 32 => 'Heart',
(int) 33 => 'Muscle',
(int) 34 => 'Brain',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Muscle',
(int) 39 => 'Brain',
(int) 40 => 'Heart',
(int) 41 => 'Liver',
(int) 42 => 'Brain',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Muscle',
(int) 47 => 'Kidney',
(int) 48 => 'Muscle',
(int) 49 => 'Brain',
(int) 50 => 'Heart',
(int) 51 => 'Liver',
(int) 52 => 'Brain',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Muscle',
(int) 57 => 'Brain',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Brain',
(int) 61 => 'Kidney'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KD_0003',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '27024548',
'seq_end' => '27103737',
'region_length' => '79189',
'region_type' => 'UCNEbase',
'el_id' => 'SIX2'
)
)
$gene_el = array(
'ENSMUST00000186162' => array(
'Brain' => array(
'average_FPKM' => '0.075',
'stddev_FPKM' => '0.04'
),
'Liver' => array(
'average_FPKM' => '0.046',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.134',
'stddev_FPKM' => '0.08'
),
'Placenta' => array(
'average_FPKM' => '0.214',
'stddev_FPKM' => '0.22'
)
)
)
$gene_key = 'ENSMUSG00000100345'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.075',
'stddev_FPKM' => '0.04'
),
'Liver' => array(
'average_FPKM' => '0.046',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.134',
'stddev_FPKM' => '0.08'
),
'Placenta' => array(
'average_FPKM' => '0.214',
'stddev_FPKM' => '0.22'
)
)
$tran_key = 'ENSMUST00000186162'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KD_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KD_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KD_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000068784' => 'S1 RNA binding domain 1',
'ENSG00000138083' => 'SIX homeobox 3',
'ENSG00000143919' => 'calmodulin-lysine N-methyltransferase',
'ENSG00000170577' => 'SIX homeobox 2',
'ENSG00000205054' => 'long intergenic non-protein coding RNA 1121',
'ENSG00000225156' => null,
'ENSG00000231054' => null,
'ENSG00000231156' => null,
'ENSG00000231848' => null,
'ENSG00000236502' => 'SIX3 antisense RNA 1',
'ENSG00000252896' => null,
'ENSG00000259439' => null,
'ENSG00000274520' => 'Six3os1 conserved region 1',
'ENSG00000274547' => 'Six3os1 conserved region 6',
'ENSG00000276048' => 'Six3os1 conserved region 5',
'ENSG00000276229' => 'Six3os1 conserved region 3',
'ENSG00000276670' => 'Six3os1 conserved region 7',
'ENSG00000277311' => 'Six3os1 conserved region 2',
'ENSG00000277809' => 'Six3os1 conserved region 4',
'ENSG00000278957' => null,
'ENSMUSG00000024134' => 'sine oculis-related homeobox 2',
'ENSMUSG00000024135' => 'S1 RNA binding domain 1',
'ENSMUSG00000038805' => 'sine oculis-related homeobox 3',
'ENSMUSG00000071037' => 'calmodulin-lysine N-methyltransferase',
'ENSMUSG00000093460' => 'SIX homeobox 3, opposite strand 1',
'ENSMUSG00000097803' => 'ribosomal protein L31, pseudogene 16',
'ENSMUSG00000098323' => 'predicted gene, 27275',
'ENSMUSG00000098438' => 'predicted gene 27178',
'ENSMUSG00000098775' => 'predicted gene, 27435',
'ENSMUSG00000098828' => 'predicted gene, 27283',
'ENSMUSG00000098920' => 'predicted gene, 27427',
'ENSMUSG00000099159' => 'predicted gene, 27801',
'ENSMUSG00000099317' => 'predicted gene, 27610',
'ENSMUSG00000099332' => 'predicted gene, 27502',
'ENSMUSG00000099635' => 'predicted gene 28528',
'ENSMUSG00000100345' => 'predicted gene 29418',
'ENSDARG00000007624' => 'GINS complex subunit 1 (Psf1 homolog)',
'ENSDARG00000028469' => 'Ribosomal protein S6 kinase',
'ENSDARG00000036282' => 'ribonuclease T2',
'ENSDARG00000058004' => 'sine oculis-related homeobox 2a',
'ENSDARG00000058008' => 'sine oculis homeobox homolog 3a',
'ENSDARG00000070049' => 'si:ch73-366i20.1',
'ENSDARG00000079827' => 'S1 RNA binding domain 1',
'ENSDARG00000080089' => null,
'ENSDARG00000089850' => 'myomesin 2',
'ENSDARG00000091099' => null,
'ENSDARG00000091900' => null,
'ENSDARG00000094301' => 'si:ch211-153i8.1',
'ENSDARG00000094925' => 'si:ch211-219o4.2',
'ENSDARG00000095224' => 'calmodulin-lysine N-methyltransferase',
'ENSDARG00000095483' => 'si:ch211-153i8.2'
),
'gene_name_arr' => array(
'ENSG00000068784' => 'SRBD1',
'ENSG00000138083' => 'SIX3',
'ENSG00000143919' => 'CAMKMT',
'ENSG00000170577' => 'SIX2',
'ENSG00000205054' => 'LINC01121',
'ENSG00000225156' => 'AC012354.6',
'ENSG00000231054' => 'AC009236.2',
'ENSG00000231156' => 'AC093702.1',
'ENSG00000231848' => 'AC012354.8',
'ENSG00000236502' => 'SIX3-AS1',
'ENSG00000252896' => 'AC067957.1',
'ENSG00000259439' => 'RP11-89K21.1',
'ENSG00000274520' => 'Six3os1_1',
'ENSG00000274547' => 'Six3os1_6',
'ENSG00000276048' => 'Six3os1_5',
'ENSG00000276229' => 'Six3os1_3',
'ENSG00000276670' => 'Six3os1_7',
'ENSG00000277311' => 'Six3os1_2',
'ENSG00000277809' => 'Six3os1_4',
'ENSG00000278957' => 'RP11-89K21.2',
'ENSMUSG00000024134' => 'Six2',
'ENSMUSG00000024135' => 'Srbd1',
'ENSMUSG00000038805' => 'Six3',
'ENSMUSG00000071037' => 'Camkmt',
'ENSMUSG00000093460' => 'Six3os1',
'ENSMUSG00000097803' => 'Rpl31-ps16',
'ENSMUSG00000098323' => 'Gm27275',
'ENSMUSG00000098438' => 'Gm27178',
'ENSMUSG00000098775' => 'Gm27435',
'ENSMUSG00000098828' => 'Gm27283',
'ENSMUSG00000098920' => 'Gm27427',
'ENSMUSG00000099159' => 'Gm27801',
'ENSMUSG00000099317' => 'Gm27610',
'ENSMUSG00000099332' => 'Gm27502',
'ENSMUSG00000099635' => 'RP24-68F22.7',
'ENSMUSG00000100345' => 'RP23-449G13.1',
'ENSDARG00000007624' => 'gins1',
'ENSDARG00000028469' => 'RPS6KA2',
'ENSDARG00000036282' => 'rnaset2',
'ENSDARG00000058004' => 'six2a',
'ENSDARG00000058008' => 'six3a',
'ENSDARG00000070049' => 'si:ch73-366i20.1',
'ENSDARG00000079827' => 'srbd1',
'ENSDARG00000080089' => 'AL929457.1',
'ENSDARG00000089850' => 'MYOM2 (2 of 3)',
'ENSDARG00000091099' => '',
'ENSDARG00000091900' => '',
'ENSDARG00000094301' => 'si:ch211-153i8.1',
'ENSDARG00000094925' => 'si:ch211-219o4.2',
'ENSDARG00000095224' => 'camkmt',
'ENSDARG00000095483' => 'si:ch211-153i8.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 33 => 'Brain',
(int) 74 => 'Breast',
(int) 92 => 'Colon',
(int) 104 => 'Heart',
(int) 135 => 'Kidney',
(int) 161 => 'Liver',
(int) 193 => 'Lung',
(int) 209 => 'Muscle',
(int) 232 => 'Ovary',
(int) 258 => 'Placenta',
(int) 282 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 91,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000263736' => array(
'start' => '45388680',
'end' => '45611281',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SRBD1-001'
),
'ENST00000461805' => array(
'start' => '45601922',
'end' => '45612165',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-005'
),
'ENST00000475073' => array(
'start' => '45418455',
'end' => '45549072',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-003'
),
'ENST00000490133' => array(
'start' => '45388776',
'end' => '45448095',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-002'
),
'ENST00000493649' => array(
'start' => '45546732',
'end' => '45568021',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-004'
),
'ENST00000260653' => array(
'start' => '44941898',
'end' => '44946077',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SIX3-001'
),
'ENST00000378494' => array(
'start' => '44361964',
'end' => '44772592',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-001'
),
'ENST00000402247' => array(
'start' => '44361950',
'end' => '44549785',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-008'
),
'ENST00000403853' => array(
'start' => '44361964',
'end' => '44457261',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-002'
),
'ENST00000407131' => array(
'start' => '44361956',
'end' => '44631714',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-010'
),
'ENST00000428929' => array(
'start' => '44372742',
'end' => '44392073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-007'
),
'ENST00000428993' => array(
'start' => '44372748',
'end' => '44550790',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CAMKMT-009'
),
'ENST00000454433' => array(
'start' => '44362105',
'end' => '44401145',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CAMKMT-005'
),
'ENST00000477623' => array(
'start' => '44369711',
'end' => '44392000',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CAMKMT-006'
),
'ENST00000477830' => array(
'start' => '44676594',
'end' => '44743657',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CAMKMT-011'
),
'ENST00000613618' => array(
'start' => '44704285',
'end' => '44772113',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-201'
),
'ENST00000303077' => array(
'start' => '45005161',
'end' => '45009430',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SIX2-001'
),
'ENST00000378479' => array(
'start' => '45174344',
'end' => '45254941',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-001'
),
'ENST00000413669' => array(
'start' => '45174340',
'end' => '45175211',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-006'
),
'ENST00000427020' => array(
'start' => '45164870',
'end' => '45192265',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-003'
),
'ENST00000430650' => array(
'start' => '45192179',
'end' => '45323295',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-004'
),
'ENST00000454673' => array(
'start' => '45187170',
'end' => '45192285',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LINC01121-002'
),
'ENST00000425325' => array(
'start' => '44954664',
'end' => '44968762',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC012354.6-001'
),
'ENST00000442821' => array(
'start' => '45168583',
'end' => '45169414',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC009236.2-001'
),
'ENST00000423433' => array(
'start' => '45013214',
'end' => '45013668',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC093702.1-001'
),
'ENST00000423051' => array(
'start' => '44996413',
'end' => '44996873',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC012354.8-001'
),
'ENST00000419364' => array(
'start' => '44940154',
'end' => '44941873',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'SIX3-AS1-001'
),
'ENST00000456467' => array(
'start' => '44940584',
'end' => '44941494',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'SIX3-AS1-002'
),
'ENST00000517087' => array(
'start' => '44782046',
'end' => '44782130',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC067957.1-201'
),
'ENST00000430847' => array(
'start' => '44929977',
'end' => '44935359',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-004'
),
'ENST00000432125' => array(
'start' => '44923035',
'end' => '44935644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-005'
),
'ENST00000437916' => array(
'start' => '44921077',
'end' => '44939199',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-001'
),
'ENST00000444871' => array(
'start' => '44931122',
'end' => '44938888',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-003'
),
'ENST00000560399' => array(
'start' => '44921077',
'end' => '44923039',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-002'
),
'ENST00000620900' => array(
'start' => '44932320',
'end' => '44932406',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_1.1-201'
),
'ENST00000620790' => array(
'start' => '44938833',
'end' => '44939028',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_6.1-201'
),
'ENST00000611000' => array(
'start' => '44937426',
'end' => '44937696',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_5.1-201'
),
'ENST00000622214' => array(
'start' => '44935294',
'end' => '44935368',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_3.1-201'
),
'ENST00000621512' => array(
'start' => '44940045',
'end' => '44940245',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_7.1-201'
),
'ENST00000616963' => array(
'start' => '44934055',
'end' => '44934271',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_2.1-201'
),
'ENST00000615706' => array(
'start' => '44935585',
'end' => '44935908',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_4.1-201'
),
'ENST00000623734' => array(
'start' => '44927914',
'end' => '44928396',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-89K21.2-001'
),
'ENSMUST00000024947' => array(
'start' => '85684282',
'end' => '85688254',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six2-201'
),
'ENSMUST00000163568' => array(
'start' => '85684277',
'end' => '85688274',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six2-001'
),
'ENSMUST00000095187' => array(
'start' => '85984665',
'end' => '86145175',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Srbd1-201'
),
'ENSMUST00000162695' => array(
'start' => '85621031',
'end' => '85629302',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six3-004'
),
'ENSMUST00000175898' => array(
'start' => '85613608',
'end' => '85625222',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six3-002'
),
'ENSMUST00000176081' => array(
'start' => '85620834',
'end' => '85626191',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six3-001'
),
'ENSMUST00000095188' => array(
'start' => '85090726',
'end' => '85458139',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Camkmt-201'
),
'ENSMUST00000159030' => array(
'start' => '85610493',
'end' => '85618275',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-013'
),
'ENSMUST00000160691' => array(
'start' => '85613682',
'end' => '85618358',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-011'
),
'ENSMUST00000161146' => array(
'start' => '85601933',
'end' => '85618372',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-006'
),
'ENSMUST00000161688' => array(
'start' => '85612873',
'end' => '85618275',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-012'
),
'ENSMUST00000175913' => array(
'start' => '85613681',
'end' => '85618073',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-008'
),
'ENSMUST00000175921' => array(
'start' => '85600651',
'end' => '85615348',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-009'
),
'ENSMUST00000176375' => array(
'start' => '85613201',
'end' => '85616246',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-007'
),
'ENSMUST00000176432' => array(
'start' => '85611620',
'end' => '85618221',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-005'
),
'ENSMUST00000176556' => array(
'start' => '85611238',
'end' => '85618385',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Six3os1-002'
),
'ENSMUST00000176917' => array(
'start' => '85609551',
'end' => '85618340',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-010'
),
'ENSMUST00000176958' => array(
'start' => '85607360',
'end' => '85618365',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-003'
),
'ENSMUST00000177220' => array(
'start' => '85607927',
'end' => '85618398',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-001'
),
'ENSMUST00000177487' => array(
'start' => '85611620',
'end' => '85618223',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-004'
),
'ENSMUST00000181130' => array(
'start' => '85498633',
'end' => '85499008',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl31-ps16-001'
),
'ENSMUST00000184318' => array(
'start' => '85616702',
'end' => '85616973',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27275-201'
),
'ENSMUST00000184962' => array(
'start' => '85599533',
'end' => '85599872',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm27178-001'
),
'ENSMUST00000183588' => array(
'start' => '85611676',
'end' => '85611763',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27435-201'
),
'ENSMUST00000184853' => array(
'start' => '85614960',
'end' => '85615282',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27283-201'
),
'ENSMUST00000185134' => array(
'start' => '85619225',
'end' => '85619417',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27427-201'
),
'ENSMUST00000184174' => array(
'start' => '85613382',
'end' => '85613604',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27801-201'
),
'ENSMUST00000184026' => array(
'start' => '85614662',
'end' => '85614735',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27610-201'
),
'ENSMUST00000183495' => array(
'start' => '85618067',
'end' => '85618265',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27502-201'
),
'ENSMUST00000188560' => array(
'start' => '85619326',
'end' => '85621001',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP24-68F22.7-001'
),
'ENSMUST00000186162' => array(
'start' => '85796218',
'end' => '85824044',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-449G13.1-001'
),
'ENSDART00000022051' => array(
'start' => '9412733',
'end' => '9418548',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'gins1-201'
),
'ENSDART00000044705' => array(
'start' => '9425931',
'end' => '9496258',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPS6KA2-201'
),
'ENSDART00000126780' => array(
'start' => '9518928',
'end' => '9533143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rnaset2-201'
),
'ENSDART00000128675' => array(
'start' => '9521448',
'end' => '9533752',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rnaset2-202'
),
'ENSDART00000080805' => array(
'start' => '9797891',
'end' => '9800761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'six2a-001'
),
'ENSDART00000080808' => array(
'start' => '9823203',
'end' => '9826579',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'six3a-001'
),
'ENSDART00000102497' => array(
'start' => '10004473',
'end' => '10006685',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch73-366i20.1-201'
),
'ENSDART00000110035' => array(
'start' => '9589432',
'end' => '9594397',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'srbd1-201'
),
'ENSDART00000138228' => array(
'start' => '9589545',
'end' => '9594699',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'srbd1-001'
),
'ENSDART00000117262' => array(
'start' => '9973979',
'end' => '9974068',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL929457.1-201'
),
'ENSDART00000125593' => array(
'start' => '9549226',
'end' => '9580261',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MYOM2 (2 of 3)-201'
),
'ENSDART00000126475' => array(
'start' => '9539138',
'end' => '9580225',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000135000' => array(
'start' => '10060116',
'end' => '10185848',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000140235' => array(
'start' => '9729430',
'end' => '9867266',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'si:ch211-153i8.1-001'
),
'ENSDART00000134629' => array(
'start' => '9663047',
'end' => '9684131',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'si:ch211-219o4.2-001'
),
'ENSDART00000133968' => array(
'start' => '9925688',
'end' => '9996672',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'camkmt-001'
),
'ENSDART00000132231' => array(
'start' => '9898915',
'end' => '9912076',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-153i8.2-001'
),
'ENSDART00000156763' => array(
'start' => '9852898',
'end' => '9911445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-153i8.2-002'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KD_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KD_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KD_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KD_0001' => array(
'genes_in_region' => array(
'ENSG00000068784' => array(
[maximum depth reached]
),
'ENSG00000138083' => array(
[maximum depth reached]
),
'ENSG00000143919' => array(
[maximum depth reached]
),
'ENSG00000170577' => array(
[maximum depth reached]
),
'ENSG00000205054' => array(
[maximum depth reached]
),
'ENSG00000225156' => array(
[maximum depth reached]
),
'ENSG00000231054' => array(
[maximum depth reached]
),
'ENSG00000231156' => array(
[maximum depth reached]
),
'ENSG00000231848' => array(
[maximum depth reached]
),
'ENSG00000236502' => array(
[maximum depth reached]
),
'ENSG00000252896' => array(
[maximum depth reached]
),
'ENSG00000259439' => array(
[maximum depth reached]
),
'ENSG00000274520' => array(
[maximum depth reached]
),
'ENSG00000278957' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Adipose',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Kidney',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Ovary',
(int) 41 => 'Testis',
(int) 42 => 'Heart',
(int) 43 => 'Liver',
(int) 44 => 'Ovary',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Breast',
(int) 48 => 'Ovary',
(int) 49 => 'Adipose',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Lung',
(int) 56 => 'Muscle',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Colon',
(int) 66 => 'Heart',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Lung',
(int) 75 => 'Ovary',
(int) 76 => 'Heart',
(int) 77 => 'Ovary',
(int) 78 => 'Adipose',
(int) 79 => 'Heart',
(int) 80 => 'Liver',
(int) 81 => 'Placenta',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Adrenal',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Colon',
(int) 89 => 'Heart',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Lung',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Placenta',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Heart',
(int) 100 => 'Testis',
(int) 101 => 'Brain',
(int) 102 => 'Breast',
(int) 103 => 'Lung',
(int) 104 => 'Muscle',
(int) 105 => 'Testis',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Kidney',
(int) 109 => 'Muscle',
(int) 110 => 'Testis',
(int) 111 => 'Brain',
(int) 112 => 'Testis',
(int) 113 => 'Brain',
(int) 114 => 'Ovary',
(int) 115 => 'Testis',
(int) 116 => 'Adrenal',
(int) 117 => 'Ovary',
(int) 118 => 'Testis',
(int) 119 => 'Brain',
(int) 120 => 'Ovary',
(int) 121 => 'Placenta',
(int) 122 => 'Breast',
(int) 123 => 'Kidney',
(int) 124 => 'Ovary',
(int) 125 => 'Testis',
(int) 126 => 'Kidney',
(int) 127 => 'Ovary',
(int) 128 => 'Testis',
(int) 129 => 'Brain',
(int) 130 => 'Ovary',
(int) 131 => 'Testis',
(int) 132 => 'Breast',
(int) 133 => 'Ovary'
)
),
'CIL_0007KD_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000024134' => array(
[maximum depth reached]
),
'ENSMUSG00000024135' => array(
[maximum depth reached]
),
'ENSMUSG00000038805' => array(
[maximum depth reached]
),
'ENSMUSG00000071037' => array(
[maximum depth reached]
),
'ENSMUSG00000093460' => array(
[maximum depth reached]
),
'ENSMUSG00000097803' => array(
[maximum depth reached]
),
'ENSMUSG00000098438' => array(
[maximum depth reached]
),
'ENSMUSG00000099159' => array(
[maximum depth reached]
),
'ENSMUSG00000099332' => array(
[maximum depth reached]
),
'ENSMUSG00000099635' => array(
[maximum depth reached]
),
'ENSMUSG00000100345' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Breast',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Testis',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Heart',
(int) 46 => 'Liver',
(int) 47 => 'Lung',
(int) 48 => 'Placenta',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Liver',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Liver',
(int) 70 => 'Testis',
(int) 71 => 'Placenta',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Liver',
(int) 75 => 'Placenta',
(int) 76 => 'Liver',
(int) 77 => 'Brain',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Placenta',
(int) 81 => 'Liver',
(int) 82 => 'Placenta',
(int) 83 => 'Bladder',
(int) 84 => 'Brain',
(int) 85 => 'Liver',
(int) 86 => 'Placenta',
(int) 87 => 'Adipose',
(int) 88 => 'Bladder',
(int) 89 => 'Brain',
(int) 90 => 'Breast',
(int) 91 => 'Colon',
(int) 92 => 'Heart',
(int) 93 => 'Kidney',
(int) 94 => 'Liver',
(int) 95 => 'Muscle',
(int) 96 => 'Ovary',
(int) 97 => 'Placenta',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Brain',
(int) 101 => 'Testis',
(int) 102 => 'Placenta',
(int) 103 => 'Bladder',
(int) 104 => 'Breast',
(int) 105 => 'Lung',
(int) 106 => 'Ovary',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Brain',
(int) 110 => 'Liver',
(int) 111 => 'Muscle',
(int) 112 => 'Placenta'
)
),
'CIL_0007KD_0004' => array(
'genes_in_region' => array(
'ENSDARG00000007624' => array(
[maximum depth reached]
),
'ENSDARG00000028469' => array(
[maximum depth reached]
),
'ENSDARG00000036282' => array(
[maximum depth reached]
),
'ENSDARG00000058004' => array(
[maximum depth reached]
),
'ENSDARG00000058008' => array(
[maximum depth reached]
),
'ENSDARG00000079827' => array(
[maximum depth reached]
),
'ENSDARG00000080089' => array(
[maximum depth reached]
),
'ENSDARG00000089850' => array(
[maximum depth reached]
),
'ENSDARG00000091099' => array(
[maximum depth reached]
),
'ENSDARG00000091900' => array(
[maximum depth reached]
),
'ENSDARG00000094301' => array(
[maximum depth reached]
),
'ENSDARG00000094925' => array(
[maximum depth reached]
),
'ENSDARG00000095224' => array(
[maximum depth reached]
),
'ENSDARG00000095483' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Muscle',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Liver',
(int) 11 => 'Brain',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Muscle',
(int) 20 => 'Brain',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Muscle',
(int) 25 => 'Brain',
(int) 26 => 'Heart',
(int) 27 => 'Muscle',
(int) 28 => 'Brain',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Brain',
(int) 32 => 'Heart',
(int) 33 => 'Muscle',
(int) 34 => 'Brain',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Muscle',
(int) 39 => 'Brain',
(int) 40 => 'Heart',
(int) 41 => 'Liver',
(int) 42 => 'Brain',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Muscle',
(int) 47 => 'Kidney',
(int) 48 => 'Muscle',
(int) 49 => 'Brain',
(int) 50 => 'Heart',
(int) 51 => 'Liver',
(int) 52 => 'Brain',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Muscle',
(int) 57 => 'Brain',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Brain',
(int) 61 => 'Kidney'
)
)
)
$gene_desc_arr = array(
'ENSG00000068784' => 'S1 RNA binding domain 1',
'ENSG00000138083' => 'SIX homeobox 3',
'ENSG00000143919' => 'calmodulin-lysine N-methyltransferase',
'ENSG00000170577' => 'SIX homeobox 2',
'ENSG00000205054' => 'long intergenic non-protein coding RNA 1121',
'ENSG00000225156' => null,
'ENSG00000231054' => null,
'ENSG00000231156' => null,
'ENSG00000231848' => null,
'ENSG00000236502' => 'SIX3 antisense RNA 1',
'ENSG00000252896' => null,
'ENSG00000259439' => null,
'ENSG00000274520' => 'Six3os1 conserved region 1',
'ENSG00000274547' => 'Six3os1 conserved region 6',
'ENSG00000276048' => 'Six3os1 conserved region 5',
'ENSG00000276229' => 'Six3os1 conserved region 3',
'ENSG00000276670' => 'Six3os1 conserved region 7',
'ENSG00000277311' => 'Six3os1 conserved region 2',
'ENSG00000277809' => 'Six3os1 conserved region 4',
'ENSG00000278957' => null,
'ENSMUSG00000024134' => 'sine oculis-related homeobox 2',
'ENSMUSG00000024135' => 'S1 RNA binding domain 1',
'ENSMUSG00000038805' => 'sine oculis-related homeobox 3',
'ENSMUSG00000071037' => 'calmodulin-lysine N-methyltransferase',
'ENSMUSG00000093460' => 'SIX homeobox 3, opposite strand 1',
'ENSMUSG00000097803' => 'ribosomal protein L31, pseudogene 16',
'ENSMUSG00000098323' => 'predicted gene, 27275',
'ENSMUSG00000098438' => 'predicted gene 27178',
'ENSMUSG00000098775' => 'predicted gene, 27435',
'ENSMUSG00000098828' => 'predicted gene, 27283',
'ENSMUSG00000098920' => 'predicted gene, 27427',
'ENSMUSG00000099159' => 'predicted gene, 27801',
'ENSMUSG00000099317' => 'predicted gene, 27610',
'ENSMUSG00000099332' => 'predicted gene, 27502',
'ENSMUSG00000099635' => 'predicted gene 28528',
'ENSMUSG00000100345' => 'predicted gene 29418',
'ENSDARG00000007624' => 'GINS complex subunit 1 (Psf1 homolog)',
'ENSDARG00000028469' => 'Ribosomal protein S6 kinase',
'ENSDARG00000036282' => 'ribonuclease T2',
'ENSDARG00000058004' => 'sine oculis-related homeobox 2a',
'ENSDARG00000058008' => 'sine oculis homeobox homolog 3a',
'ENSDARG00000070049' => 'si:ch73-366i20.1',
'ENSDARG00000079827' => 'S1 RNA binding domain 1',
'ENSDARG00000080089' => null,
'ENSDARG00000089850' => 'myomesin 2',
'ENSDARG00000091099' => null,
'ENSDARG00000091900' => null,
'ENSDARG00000094301' => 'si:ch211-153i8.1',
'ENSDARG00000094925' => 'si:ch211-219o4.2',
'ENSDARG00000095224' => 'calmodulin-lysine N-methyltransferase',
'ENSDARG00000095483' => 'si:ch211-153i8.2'
)
$gene_name_arr = array(
'ENSG00000068784' => 'SRBD1',
'ENSG00000138083' => 'SIX3',
'ENSG00000143919' => 'CAMKMT',
'ENSG00000170577' => 'SIX2',
'ENSG00000205054' => 'LINC01121',
'ENSG00000225156' => 'AC012354.6',
'ENSG00000231054' => 'AC009236.2',
'ENSG00000231156' => 'AC093702.1',
'ENSG00000231848' => 'AC012354.8',
'ENSG00000236502' => 'SIX3-AS1',
'ENSG00000252896' => 'AC067957.1',
'ENSG00000259439' => 'RP11-89K21.1',
'ENSG00000274520' => 'Six3os1_1',
'ENSG00000274547' => 'Six3os1_6',
'ENSG00000276048' => 'Six3os1_5',
'ENSG00000276229' => 'Six3os1_3',
'ENSG00000276670' => 'Six3os1_7',
'ENSG00000277311' => 'Six3os1_2',
'ENSG00000277809' => 'Six3os1_4',
'ENSG00000278957' => 'RP11-89K21.2',
'ENSMUSG00000024134' => 'Six2',
'ENSMUSG00000024135' => 'Srbd1',
'ENSMUSG00000038805' => 'Six3',
'ENSMUSG00000071037' => 'Camkmt',
'ENSMUSG00000093460' => 'Six3os1',
'ENSMUSG00000097803' => 'Rpl31-ps16',
'ENSMUSG00000098323' => 'Gm27275',
'ENSMUSG00000098438' => 'Gm27178',
'ENSMUSG00000098775' => 'Gm27435',
'ENSMUSG00000098828' => 'Gm27283',
'ENSMUSG00000098920' => 'Gm27427',
'ENSMUSG00000099159' => 'Gm27801',
'ENSMUSG00000099317' => 'Gm27610',
'ENSMUSG00000099332' => 'Gm27502',
'ENSMUSG00000099635' => 'RP24-68F22.7',
'ENSMUSG00000100345' => 'RP23-449G13.1',
'ENSDARG00000007624' => 'gins1',
'ENSDARG00000028469' => 'RPS6KA2',
'ENSDARG00000036282' => 'rnaset2',
'ENSDARG00000058004' => 'six2a',
'ENSDARG00000058008' => 'six3a',
'ENSDARG00000070049' => 'si:ch73-366i20.1',
'ENSDARG00000079827' => 'srbd1',
'ENSDARG00000080089' => 'AL929457.1',
'ENSDARG00000089850' => 'MYOM2 (2 of 3)',
'ENSDARG00000091099' => '',
'ENSDARG00000091900' => '',
'ENSDARG00000094301' => 'si:ch211-153i8.1',
'ENSDARG00000094925' => 'si:ch211-219o4.2',
'ENSDARG00000095224' => 'camkmt',
'ENSDARG00000095483' => 'si:ch211-153i8.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KD_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '44450120',
'seq_end' => '45456944',
'region_length' => '1006824',
'region_type' => 'UCNEbase',
'el_id' => 'SIX2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KD_0002',
'tax_id' => '10090',
'chromosome' => '17',
'seq_start' => '85172000',
'seq_end' => '86036297',
'region_length' => '864297',
'region_type' => 'UCNEbase',
'el_id' => 'SIX2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KD_0003',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '27024548',
'seq_end' => '27103737',
'region_length' => '79189',
'region_type' => 'UCNEbase',
'el_id' => 'SIX2'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KD_0004',
'tax_id' => '7955',
'chromosome' => '13',
'seq_start' => '9331455',
'seq_end' => '10073447',
'region_length' => '741992',
'region_type' => 'UCNEbase',
'el_id' => 'SIX2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 33 => 'Brain',
(int) 74 => 'Breast',
(int) 92 => 'Colon',
(int) 104 => 'Heart',
(int) 135 => 'Kidney',
(int) 161 => 'Liver',
(int) 193 => 'Lung',
(int) 209 => 'Muscle',
(int) 232 => 'Ovary',
(int) 258 => 'Placenta',
(int) 282 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 91
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000263736' => array(
'start' => '45388680',
'end' => '45611281',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SRBD1-001'
),
'ENST00000461805' => array(
'start' => '45601922',
'end' => '45612165',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-005'
),
'ENST00000475073' => array(
'start' => '45418455',
'end' => '45549072',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-003'
),
'ENST00000490133' => array(
'start' => '45388776',
'end' => '45448095',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-002'
),
'ENST00000493649' => array(
'start' => '45546732',
'end' => '45568021',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SRBD1-004'
),
'ENST00000260653' => array(
'start' => '44941898',
'end' => '44946077',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SIX3-001'
),
'ENST00000378494' => array(
'start' => '44361964',
'end' => '44772592',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-001'
),
'ENST00000402247' => array(
'start' => '44361950',
'end' => '44549785',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-008'
),
'ENST00000403853' => array(
'start' => '44361964',
'end' => '44457261',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-002'
),
'ENST00000407131' => array(
'start' => '44361956',
'end' => '44631714',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-010'
),
'ENST00000428929' => array(
'start' => '44372742',
'end' => '44392073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-007'
),
'ENST00000428993' => array(
'start' => '44372748',
'end' => '44550790',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CAMKMT-009'
),
'ENST00000454433' => array(
'start' => '44362105',
'end' => '44401145',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CAMKMT-005'
),
'ENST00000477623' => array(
'start' => '44369711',
'end' => '44392000',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CAMKMT-006'
),
'ENST00000477830' => array(
'start' => '44676594',
'end' => '44743657',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CAMKMT-011'
),
'ENST00000613618' => array(
'start' => '44704285',
'end' => '44772113',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CAMKMT-201'
),
'ENST00000303077' => array(
'start' => '45005161',
'end' => '45009430',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SIX2-001'
),
'ENST00000378479' => array(
'start' => '45174344',
'end' => '45254941',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-001'
),
'ENST00000413669' => array(
'start' => '45174340',
'end' => '45175211',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-006'
),
'ENST00000427020' => array(
'start' => '45164870',
'end' => '45192265',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-003'
),
'ENST00000430650' => array(
'start' => '45192179',
'end' => '45323295',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01121-004'
),
'ENST00000454673' => array(
'start' => '45187170',
'end' => '45192285',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LINC01121-002'
),
'ENST00000425325' => array(
'start' => '44954664',
'end' => '44968762',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC012354.6-001'
),
'ENST00000442821' => array(
'start' => '45168583',
'end' => '45169414',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC009236.2-001'
),
'ENST00000423433' => array(
'start' => '45013214',
'end' => '45013668',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC093702.1-001'
),
'ENST00000423051' => array(
'start' => '44996413',
'end' => '44996873',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC012354.8-001'
),
'ENST00000419364' => array(
'start' => '44940154',
'end' => '44941873',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'SIX3-AS1-001'
),
'ENST00000456467' => array(
'start' => '44940584',
'end' => '44941494',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'SIX3-AS1-002'
),
'ENST00000517087' => array(
'start' => '44782046',
'end' => '44782130',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC067957.1-201'
),
'ENST00000430847' => array(
'start' => '44929977',
'end' => '44935359',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-004'
),
'ENST00000432125' => array(
'start' => '44923035',
'end' => '44935644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-005'
),
'ENST00000437916' => array(
'start' => '44921077',
'end' => '44939199',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-001'
),
'ENST00000444871' => array(
'start' => '44931122',
'end' => '44938888',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-003'
),
'ENST00000560399' => array(
'start' => '44921077',
'end' => '44923039',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-89K21.1-002'
),
'ENST00000620900' => array(
'start' => '44932320',
'end' => '44932406',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_1.1-201'
),
'ENST00000620790' => array(
'start' => '44938833',
'end' => '44939028',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_6.1-201'
),
'ENST00000611000' => array(
'start' => '44937426',
'end' => '44937696',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_5.1-201'
),
'ENST00000622214' => array(
'start' => '44935294',
'end' => '44935368',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_3.1-201'
),
'ENST00000621512' => array(
'start' => '44940045',
'end' => '44940245',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_7.1-201'
),
'ENST00000616963' => array(
'start' => '44934055',
'end' => '44934271',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_2.1-201'
),
'ENST00000615706' => array(
'start' => '44935585',
'end' => '44935908',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Six3os1_4.1-201'
),
'ENST00000623734' => array(
'start' => '44927914',
'end' => '44928396',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-89K21.2-001'
),
'ENSMUST00000024947' => array(
'start' => '85684282',
'end' => '85688254',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six2-201'
),
'ENSMUST00000163568' => array(
'start' => '85684277',
'end' => '85688274',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six2-001'
),
'ENSMUST00000095187' => array(
'start' => '85984665',
'end' => '86145175',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Srbd1-201'
),
'ENSMUST00000162695' => array(
'start' => '85621031',
'end' => '85629302',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six3-004'
),
'ENSMUST00000175898' => array(
'start' => '85613608',
'end' => '85625222',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six3-002'
),
'ENSMUST00000176081' => array(
'start' => '85620834',
'end' => '85626191',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Six3-001'
),
'ENSMUST00000095188' => array(
'start' => '85090726',
'end' => '85458139',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Camkmt-201'
),
'ENSMUST00000159030' => array(
'start' => '85610493',
'end' => '85618275',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-013'
),
'ENSMUST00000160691' => array(
'start' => '85613682',
'end' => '85618358',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-011'
),
'ENSMUST00000161146' => array(
'start' => '85601933',
'end' => '85618372',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-006'
),
'ENSMUST00000161688' => array(
'start' => '85612873',
'end' => '85618275',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-012'
),
'ENSMUST00000175913' => array(
'start' => '85613681',
'end' => '85618073',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-008'
),
'ENSMUST00000175921' => array(
'start' => '85600651',
'end' => '85615348',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-009'
),
'ENSMUST00000176375' => array(
'start' => '85613201',
'end' => '85616246',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-007'
),
'ENSMUST00000176432' => array(
'start' => '85611620',
'end' => '85618221',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-005'
),
'ENSMUST00000176556' => array(
'start' => '85611238',
'end' => '85618385',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Six3os1-002'
),
'ENSMUST00000176917' => array(
'start' => '85609551',
'end' => '85618340',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-010'
),
'ENSMUST00000176958' => array(
'start' => '85607360',
'end' => '85618365',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-003'
),
'ENSMUST00000177220' => array(
'start' => '85607927',
'end' => '85618398',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-001'
),
'ENSMUST00000177487' => array(
'start' => '85611620',
'end' => '85618223',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Six3os1-004'
),
'ENSMUST00000181130' => array(
'start' => '85498633',
'end' => '85499008',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl31-ps16-001'
),
'ENSMUST00000184318' => array(
'start' => '85616702',
'end' => '85616973',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27275-201'
),
'ENSMUST00000184962' => array(
'start' => '85599533',
'end' => '85599872',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm27178-001'
),
'ENSMUST00000183588' => array(
'start' => '85611676',
'end' => '85611763',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27435-201'
),
'ENSMUST00000184853' => array(
'start' => '85614960',
'end' => '85615282',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27283-201'
),
'ENSMUST00000185134' => array(
'start' => '85619225',
'end' => '85619417',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27427-201'
),
'ENSMUST00000184174' => array(
'start' => '85613382',
'end' => '85613604',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27801-201'
),
'ENSMUST00000184026' => array(
'start' => '85614662',
'end' => '85614735',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27610-201'
),
'ENSMUST00000183495' => array(
'start' => '85618067',
'end' => '85618265',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm27502-201'
),
'ENSMUST00000188560' => array(
'start' => '85619326',
'end' => '85621001',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP24-68F22.7-001'
),
'ENSMUST00000186162' => array(
'start' => '85796218',
'end' => '85824044',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-449G13.1-001'
),
'ENSDART00000022051' => array(
'start' => '9412733',
'end' => '9418548',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'gins1-201'
),
'ENSDART00000044705' => array(
'start' => '9425931',
'end' => '9496258',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPS6KA2-201'
),
'ENSDART00000126780' => array(
'start' => '9518928',
'end' => '9533143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rnaset2-201'
),
'ENSDART00000128675' => array(
'start' => '9521448',
'end' => '9533752',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rnaset2-202'
),
'ENSDART00000080805' => array(
'start' => '9797891',
'end' => '9800761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'six2a-001'
),
'ENSDART00000080808' => array(
'start' => '9823203',
'end' => '9826579',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'six3a-001'
),
'ENSDART00000102497' => array(
'start' => '10004473',
'end' => '10006685',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch73-366i20.1-201'
),
'ENSDART00000110035' => array(
'start' => '9589432',
'end' => '9594397',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'srbd1-201'
),
'ENSDART00000138228' => array(
'start' => '9589545',
'end' => '9594699',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'srbd1-001'
),
'ENSDART00000117262' => array(
'start' => '9973979',
'end' => '9974068',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL929457.1-201'
),
'ENSDART00000125593' => array(
'start' => '9549226',
'end' => '9580261',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MYOM2 (2 of 3)-201'
),
'ENSDART00000126475' => array(
'start' => '9539138',
'end' => '9580225',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000135000' => array(
'start' => '10060116',
'end' => '10185848',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000140235' => array(
'start' => '9729430',
'end' => '9867266',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'si:ch211-153i8.1-001'
),
'ENSDART00000134629' => array(
'start' => '9663047',
'end' => '9684131',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'si:ch211-219o4.2-001'
),
'ENSDART00000133968' => array(
'start' => '9925688',
'end' => '9996672',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'camkmt-001'
),
'ENSDART00000132231' => array(
'start' => '9898915',
'end' => '9912076',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-153i8.2-001'
),
'ENSDART00000156763' => array(
'start' => '9852898',
'end' => '9911445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-153i8.2-002'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KD_0001' => array(
'genes_in_region' => array(
'ENSG00000068784' => array(
[maximum depth reached]
),
'ENSG00000138083' => array(
[maximum depth reached]
),
'ENSG00000143919' => array(
[maximum depth reached]
),
'ENSG00000170577' => array(
[maximum depth reached]
),
'ENSG00000205054' => array(
[maximum depth reached]
),
'ENSG00000225156' => array(
[maximum depth reached]
),
'ENSG00000231054' => array(
[maximum depth reached]
),
'ENSG00000231156' => array(
[maximum depth reached]
),
'ENSG00000231848' => array(
[maximum depth reached]
),
'ENSG00000236502' => array(
[maximum depth reached]
),
'ENSG00000252896' => array(
[maximum depth reached]
),
'ENSG00000259439' => array(
[maximum depth reached]
),
'ENSG00000274520' => array(
[maximum depth reached]
),
'ENSG00000278957' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Adipose',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Kidney',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Ovary',
(int) 41 => 'Testis',
(int) 42 => 'Heart',
(int) 43 => 'Liver',
(int) 44 => 'Ovary',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Breast',
(int) 48 => 'Ovary',
(int) 49 => 'Adipose',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Lung',
(int) 56 => 'Muscle',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Colon',
(int) 66 => 'Heart',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Lung',
(int) 75 => 'Ovary',
(int) 76 => 'Heart',
(int) 77 => 'Ovary',
(int) 78 => 'Adipose',
(int) 79 => 'Heart',
(int) 80 => 'Liver',
(int) 81 => 'Placenta',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Adrenal',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Colon',
(int) 89 => 'Heart',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Lung',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Placenta',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Heart',
(int) 100 => 'Testis',
(int) 101 => 'Brain',
(int) 102 => 'Breast',
(int) 103 => 'Lung',
(int) 104 => 'Muscle',
(int) 105 => 'Testis',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Kidney',
(int) 109 => 'Muscle',
(int) 110 => 'Testis',
(int) 111 => 'Brain',
(int) 112 => 'Testis',
(int) 113 => 'Brain',
(int) 114 => 'Ovary',
(int) 115 => 'Testis',
(int) 116 => 'Adrenal',
(int) 117 => 'Ovary',
(int) 118 => 'Testis',
(int) 119 => 'Brain',
(int) 120 => 'Ovary',
(int) 121 => 'Placenta',
(int) 122 => 'Breast',
(int) 123 => 'Kidney',
(int) 124 => 'Ovary',
(int) 125 => 'Testis',
(int) 126 => 'Kidney',
(int) 127 => 'Ovary',
(int) 128 => 'Testis',
(int) 129 => 'Brain',
(int) 130 => 'Ovary',
(int) 131 => 'Testis',
(int) 132 => 'Breast',
(int) 133 => 'Ovary'
)
),
'CIL_0007KD_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000024134' => array(
[maximum depth reached]
),
'ENSMUSG00000024135' => array(
[maximum depth reached]
),
'ENSMUSG00000038805' => array(
[maximum depth reached]
),
'ENSMUSG00000071037' => array(
[maximum depth reached]
),
'ENSMUSG00000093460' => array(
[maximum depth reached]
),
'ENSMUSG00000097803' => array(
[maximum depth reached]
),
'ENSMUSG00000098438' => array(
[maximum depth reached]
),
'ENSMUSG00000099159' => array(
[maximum depth reached]
),
'ENSMUSG00000099332' => array(
[maximum depth reached]
),
'ENSMUSG00000099635' => array(
[maximum depth reached]
),
'ENSMUSG00000100345' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Breast',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Testis',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Heart',
(int) 46 => 'Liver',
(int) 47 => 'Lung',
(int) 48 => 'Placenta',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Liver',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Liver',
(int) 70 => 'Testis',
(int) 71 => 'Placenta',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Liver',
(int) 75 => 'Placenta',
(int) 76 => 'Liver',
(int) 77 => 'Brain',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Placenta',
(int) 81 => 'Liver',
(int) 82 => 'Placenta',
(int) 83 => 'Bladder',
(int) 84 => 'Brain',
(int) 85 => 'Liver',
(int) 86 => 'Placenta',
(int) 87 => 'Adipose',
(int) 88 => 'Bladder',
(int) 89 => 'Brain',
(int) 90 => 'Breast',
(int) 91 => 'Colon',
(int) 92 => 'Heart',
(int) 93 => 'Kidney',
(int) 94 => 'Liver',
(int) 95 => 'Muscle',
(int) 96 => 'Ovary',
(int) 97 => 'Placenta',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Brain',
(int) 101 => 'Testis',
(int) 102 => 'Placenta',
(int) 103 => 'Bladder',
(int) 104 => 'Breast',
(int) 105 => 'Lung',
(int) 106 => 'Ovary',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Brain',
(int) 110 => 'Liver',
(int) 111 => 'Muscle',
(int) 112 => 'Placenta'
)
),
'CIL_0007KD_0004' => array(
'genes_in_region' => array(
'ENSDARG00000007624' => array(
[maximum depth reached]
),
'ENSDARG00000028469' => array(
[maximum depth reached]
),
'ENSDARG00000036282' => array(
[maximum depth reached]
),
'ENSDARG00000058004' => array(
[maximum depth reached]
),
'ENSDARG00000058008' => array(
[maximum depth reached]
),
'ENSDARG00000079827' => array(
[maximum depth reached]
),
'ENSDARG00000080089' => array(
[maximum depth reached]
),
'ENSDARG00000089850' => array(
[maximum depth reached]
),
'ENSDARG00000091099' => array(
[maximum depth reached]
),
'ENSDARG00000091900' => array(
[maximum depth reached]
),
'ENSDARG00000094301' => array(
[maximum depth reached]
),
'ENSDARG00000094925' => array(
[maximum depth reached]
),
'ENSDARG00000095224' => array(
[maximum depth reached]
),
'ENSDARG00000095483' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Muscle',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Liver',
(int) 11 => 'Brain',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Muscle',
(int) 20 => 'Brain',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Muscle',
(int) 25 => 'Brain',
(int) 26 => 'Heart',
(int) 27 => 'Muscle',
(int) 28 => 'Brain',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Brain',
(int) 32 => 'Heart',
(int) 33 => 'Muscle',
(int) 34 => 'Brain',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Muscle',
(int) 39 => 'Brain',
(int) 40 => 'Heart',
(int) 41 => 'Liver',
(int) 42 => 'Brain',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Muscle',
(int) 47 => 'Kidney',
(int) 48 => 'Muscle',
(int) 49 => 'Brain',
(int) 50 => 'Heart',
(int) 51 => 'Liver',
(int) 52 => 'Brain',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Muscle',
(int) 57 => 'Brain',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Brain',
(int) 61 => 'Kidney'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KD_0003',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '27024548',
'seq_end' => '27103737',
'region_length' => '79189',
'region_type' => 'UCNEbase',
'el_id' => 'SIX2'
)
)
$gene_el = array(
'ENSMUST00000186162' => array(
'Brain' => array(
'average_FPKM' => '0.075',
'stddev_FPKM' => '0.04'
),
'Liver' => array(
'average_FPKM' => '0.046',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.134',
'stddev_FPKM' => '0.08'
),
'Placenta' => array(
'average_FPKM' => '0.214',
'stddev_FPKM' => '0.22'
)
)
)
$gene_key = 'ENSMUSG00000100345'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.075',
'stddev_FPKM' => '0.04'
),
'Liver' => array(
'average_FPKM' => '0.046',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.134',
'stddev_FPKM' => '0.08'
),
'Placenta' => array(
'average_FPKM' => '0.214',
'stddev_FPKM' => '0.22'
)
)
$tran_key = 'ENSMUST00000186162'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(SRBD1)