C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001NM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000143919-ENSG00000138083 CGP 9606 2:44361950-44946077
GeneTranscriptPositionBiotype
ENSG00000138083 (SIX3)
SIX homeobox 3 		ENST00000260653 (SIX3-001) 44941898-44946077 protein_coding
ENSG00000143919 (CAMKMT)
calmodulin-lysine N-methyltransferase 		ENST00000378494 (CAMKMT-001) 44361964-44772592 protein_coding
ENST00000402247 (CAMKMT-008) 44361950-44549785 protein_coding
ENST00000403853 (CAMKMT-002) 44361964-44457261 protein_coding
ENST00000407131 (CAMKMT-010) 44361956-44631714 protein_coding
ENST00000428929 (CAMKMT-007) 44372742-44392073 protein_coding
ENST00000428993 (CAMKMT-009) 44372748-44550790 nonsense_mediated_decay
ENST00000454433 (CAMKMT-005) 44362105-44401145 nonsense_mediated_decay
ENST00000477623 (CAMKMT-006) 44369711-44392000 processed_transcript
ENST00000477830 (CAMKMT-011) 44676594-44743657 processed_transcript
ENST00000613618 (CAMKMT-201) 44704285-44772113 protein_coding
ENSG00000236502 (SIX3-AS1)
SIX3 antisense RNA 1 		ENST00000419364 (SIX3-AS1-001) 44940154-44941873 lincRNA
ENST00000456467 (SIX3-AS1-002) 44940584-44941494 lincRNA
ENSG00000252896 (AC067957.1)
 ENST00000517087 (AC067957.1-201) 44782046-44782130 miRNA
ENSG00000259439 (RP11-89K21.1)
 ENST00000430847 (RP11-89K21.1-004) 44929977-44935359 lincRNA
ENST00000432125 (RP11-89K21.1-005) 44923035-44935644 lincRNA
ENST00000437916 (RP11-89K21.1-001) 44921077-44939199 lincRNA
ENST00000444871 (RP11-89K21.1-003) 44931122-44938888 lincRNA
ENST00000560399 (RP11-89K21.1-002) 44921077-44923039 lincRNA
ENSG00000274520 (Six3os1_1)
Six3os1 conserved region 1 		ENST00000620900 (Six3os1_1.1-201) 44932320-44932406 misc_RNA
ENSG00000278957 (RP11-89K21.2)
 ENST00000623734 (RP11-89K21.2-001) 44927914-44928396 TEC
CIL_0001NM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000071037-ENSMUSG00000038805 CGP 10090 17:85090726-85629302
GeneTranscriptPositionBiotype
ENSMUSG00000038805 (Six3)
sine oculis-related homeobox 3 		ENSMUST00000162695 (Six3-004) 85621031-85629302 protein_coding
ENSMUST00000175898 (Six3-002) 85613608-85625222 protein_coding
ENSMUST00000176081 (Six3-001) 85620834-85626191 protein_coding
ENSMUSG00000071037 (Camkmt)
calmodulin-lysine N-methyltransferase 		ENSMUST00000095188 (Camkmt-201) 85090726-85458139 protein_coding
ENSMUSG00000093460 (Six3os1)
SIX homeobox 3, opposite strand 1 		ENSMUST00000159030 (Six3os1-013) 85610493-85618275 antisense
ENSMUST00000160691 (Six3os1-011) 85613682-85618358 antisense
ENSMUST00000161146 (Six3os1-006) 85601933-85618372 antisense
ENSMUST00000161688 (Six3os1-012) 85612873-85618275 antisense
ENSMUST00000175913 (Six3os1-008) 85613681-85618073 antisense
ENSMUST00000175921 (Six3os1-009) 85600651-85615348 antisense
ENSMUST00000176375 (Six3os1-007) 85613201-85616246 antisense
ENSMUST00000176432 (Six3os1-005) 85611620-85618221 antisense
ENSMUST00000176556 (Six3os1-002) 85611238-85618385 retained_intron
ENSMUST00000176917 (Six3os1-010) 85609551-85618340 antisense
ENSMUST00000176958 (Six3os1-003) 85607360-85618365 antisense
ENSMUST00000177220 (Six3os1-001) 85607927-85618398 antisense
ENSMUST00000177487 (Six3os1-004) 85611620-85618223 antisense
ENSMUSG00000097803 (Rpl31-ps16)
ribosomal protein L31, pseudogene 16 		ENSMUST00000181130 (Rpl31-ps16-001) 85498633-85499008 processed_pseudogene
ENSMUSG00000098438 (Gm27178)
predicted gene 27178 		ENSMUST00000184962 (Gm27178-001) 85599533-85599872 processed_pseudogene
ENSMUSG00000099159 (Gm27801)
predicted gene, 27801 		ENSMUST00000184174 (Gm27801-201) 85613382-85613604 misc_RNA
ENSMUSG00000099332 (Gm27502)
predicted gene, 27502 		ENSMUST00000183495 (Gm27502-201) 85618067-85618265 misc_RNA
ENSMUSG00000099635 (RP24-68F22.7)
predicted gene 28528 		ENSMUST00000188560 (RP24-68F22.7-001) 85619326-85621001 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NM_0001ENSG00000138083ENST00000260653ENSG00000143919ENST00000378494ENST00000402247ENST00000403853ENST00000407131ENST00000428929ENST00000428993ENST00000454433ENST00000477623ENST00000477830ENST00000613618ENSG00000236502ENST00000419364ENST00000456467ENSG00000252896ENST00000517087ENSG00000259439ENST00000430847ENST00000432125ENST00000437916ENST00000444871ENST00000560399ENSG00000274520ENST00000620900ENSG00000278957ENST00000623734CIL_0001NM_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NM_0001ENSG00000138083ENST00000260653ENSG00000143919ENST00000378494ENST00000402247ENST00000403853ENST00000407131ENST00000428929ENST00000613618ENSG00000236502ENST00000419364ENST00000456467ENSG00000252896ENST00000517087ENSG00000259439ENST00000430847ENST00000432125ENST00000437916ENST00000444871ENST00000560399ENSG00000274520ENST00000620900ENSG00000278957ENST00000623734CIL_0001NM_0002ENSMUSG00000038805ENSMUST00000162695ENSMUST00000175898ENSMUST00000176081ENSMUSG00000071037ENSMUST00000095188ENSMUSG00000093460ENSMUST00000159030ENSMUST00000161146ENSMUST00000175921ENSMUST00000176375ENSMUST00000176556ENSMUST00000176958ENSMUST00000177220ENSMUSG00000097803ENSMUST00000181130ENSMUSG00000098438ENSMUST00000184962ENSMUSG00000099159ENSMUST00000184174ENSMUSG00000099332ENSMUST00000183495ENSMUSG00000099635ENSMUST00000188560
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138083 ENST00000260653 0.008±0.00 N/A 0.154±0.00 0.159±0.11 0.117±0.00 0.034±0.00 N/A 0.052±0.00 N/A 0.285±0.00 0.033±0.00 0.027±0.01 0.021±0.00 0.165±0.13
ENSG00000143919 ENST00000378494 0.915±0.00 1.508±0.00 N/A 2.536±0.00 1.552±0.00 1.567±0.00 0.560±0.50 3.679±0.00 0.827±0.00 0.954±0.00 1.328±0.00 2.434±0.30 0.667±0.05 3.469±0.30
ENST00000402247 N/A N/A N/A 0.673±0.00 N/A N/A N/A N/A N/A N/A N/A 2.647±0.00 N/A 2.477±0.00
ENST00000403853 N/A N/A N/A N/A N/A N/A 0.295±0.00 N/A 0.835±0.00 N/A N/A 1.200±0.23 N/A N/A
ENST00000407131 N/A N/A N/A N/A N/A N/A 0.296±0.00 0.092±0.00 N/A N/A N/A N/A N/A N/A
ENST00000428929 N/A N/A N/A N/A 4.282±0.00 N/A N/A N/A N/A N/A N/A 3.763±0.00 N/A N/A
ENST00000428993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613618 0.691±0.00 N/A N/A 2.261±0.25 1.903±0.00 2.327±1.53 N/A 2.046±0.00 1.903±0.00 0.628±0.00 0.972±0.00 2.717±0.17 0.617±0.00 1.986±0.00
ENSG00000236502 ENST00000419364 N/A N/A N/A 0.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00
ENST00000456467 N/A N/A N/A 0.187±0.00 N/A N/A N/A N/A N/A N/A N/A 0.090±0.00 N/A 1.197±0.00
ENSG00000252896 ENST00000517087 N/A 0.612±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259439 ENST00000430847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.297±1.11 N/A 0.052±0.00
ENST00000432125 N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A N/A 0.304±0.00 0.037±0.00 N/A
ENST00000437916 N/A N/A N/A N/A 0.040±0.00 N/A N/A 0.080±0.00 N/A N/A N/A 0.222±0.13 N/A 0.031±0.00
ENST00000444871 N/A N/A N/A N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A 0.274±0.00 N/A 0.150±0.00
ENST00000560399 N/A N/A N/A 0.438±0.00 N/A N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A 0.024±0.00
ENSG00000274520 ENST00000620900 N/A N/A N/A N/A 0.721±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000278957 ENST00000623734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.141±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038805 ENSMUST00000162695 N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.002±0.00 0.018±0.00 N/A 0.028±0.00 N/A 0.019±0.00
ENSMUST00000175898 N/A N/A 0.003±0.00 4.163±3.05 N/A N/A 0.026±0.02 N/A 0.022±0.00 0.012±0.00 N/A N/A 0.061±0.04 N/A
ENSMUST00000176081 N/A N/A N/A 3.839±0.19 0.021±0.00 N/A N/A N/A 0.011±0.00 N/A N/A 0.003±0.00 0.013±0.00 0.003±0.00
ENSMUSG00000071037 ENSMUST00000095188 1.536±0.28 3.052±1.82 1.384±0.00 2.317±0.49 1.031±0.59 1.720±0.55 0.505±0.14 1.757±0.46 0.532±0.19 1.125±0.72 0.228±0.09 1.548±0.72 1.968±1.46 2.142±0.36
ENSMUSG00000093460 ENSMUST00000159030 N/A N/A N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.030±0.01
ENSMUST00000160691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A
ENSMUST00000161688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175921 N/A N/A 0.010±0.00 5.437±0.97 N/A N/A N/A N/A 0.021±0.02 N/A N/A N/A 0.016±0.00 N/A
ENSMUST00000176375 N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A
ENSMUST00000176432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176556 N/A N/A N/A 2.789±1.67 N/A N/A N/A N/A 0.009±0.00 0.007±0.00 N/A N/A 0.031±0.03 N/A
ENSMUST00000176917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176958 N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A N/A 0.014±0.00 N/A
ENSMUST00000177220 N/A N/A 0.003±0.00 3.191±0.70 N/A N/A N/A N/A 0.003±0.00 N/A N/A N/A 0.005±0.00 N/A
ENSMUST00000177487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000097803 ENSMUST00000181130 0.653±0.28 N/A 1.619±1.43 0.506±0.43 0.482±0.03 0.494±0.13 0.417±0.26 0.229±0.09 1.838±1.98 N/A 0.220±0.04 0.985±0.37 0.177±0.05 0.141±0.00
ENSMUSG00000098438 ENSMUST00000184962 0.219±0.00 N/A N/A 0.088±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.269±0.11
ENSMUSG00000099159 ENSMUST00000184174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.179±0.00 N/A
ENSMUSG00000099332 ENSMUST00000183495 N/A N/A 0.543±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099635 ENSMUST00000188560 N/A N/A N/A N/A 0.123±0.00 N/A N/A N/A N/A 0.049±0.00 N/A 0.023±0.00 0.041±0.01 0.089±0.00

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