C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, BED domain containing 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000094410 Zbed6 10090 - 1:133619871-133661380 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027736 Zbed6-201 133619871-133661380 protein_coding
  ENSMUST00000179598 Zbed6-202 133619940-133661318 protein_coding
  ENSMUST00000186476 Zbed6-001 133619940-133661318 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027736ENSMUST00000186476
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027736 4.220±0.62 2.308±0.65 43.320±12.77 12.718±7.35 7.213±2.05 8.082±2.05 3.700±1.23 5.601±3.29 11.925±6.94 4.796±0.56 16.429±1.59 14.536±7.38 17.445±9.45 1.528±0.13
ENSMUST00000186476 4.973±1.90 3.575±0.32 3.820±0.18 0.815±0.00 4.748±1.03 3.402±1.03 3.273±0.54 2.571±0.45 1.975±0.71 4.838±0.78 2.387±0.00 4.295±0.97 1.273±0.00 1.036±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0002 VISTA 1:133249313-133850886
CIL_00096T CIL_00096T_0002 VISTA 1:133444227-134045719

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000346 ISS transcription export complex
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0016973 ISS poly(A)+ mRNA export from nucleus
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000257315 ZBED6 zinc finger, BED-type containing 6 protein_coding Homo_sapiens

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