Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	zinc finger, BED domain containing 6
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSMUSG00000094410	Zbed6	10090	-	1:133619871-133661380	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENSMUST00000027736		Zbed6-201	133619871-133661380	protein_coding
	ENSMUST00000179598		Zbed6-202	133619940-133661318	protein_coding
	ENSMUST00000186476		Zbed6-001	133619940-133661318	nonsense_mediated_decay

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000027736	4.220±0.62	2.308±0.65	43.320±12.77	12.718±7.35	7.213±2.05	8.082±2.05	3.700±1.23	5.601±3.29	11.925±6.94	4.796±0.56	16.429±1.59	14.536±7.38	17.445±9.45	1.528±0.13
ENSMUST00000186476	4.973±1.90	3.575±0.32	3.820±0.18	0.815±0.00	4.748±1.03	3.402±1.03	3.273±0.54	2.571±0.45	1.975±0.71	4.838±0.78	2.387±0.00	4.295±0.97	1.273±0.00	1.036±0.23

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0008W2	CIL_0008W2_0002	VISTA	1:133249313-133850886
CIL_00096T	CIL_00096T_0002	VISTA	1:133444227-134045719

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0000122	IDA	negative regulation of transcription from RNA polymerase II promoter
GO:0000346	ISS	transcription export complex
GO:0003677	IEA	DNA binding
GO:0005634	IDA	nucleus
GO:0005730	IDA	nucleolus
GO:0006351	IEA	transcription, DNA-templated
GO:0016973	ISS	poly(A)+ mRNA export from nucleus
GO:0045892	IMP	negative regulation of transcription, DNA-templated
GO:0046872	IEA	metal ion binding
GO:0046983	IEA	protein dimerization activity

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSG00000257315	ZBED6	zinc finger, BED-type containing 6	protein_coding	Homo_sapiens

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