| Source ID |
Type |
Tax ID |
Position |
| ENSDARG00000076572-ENSDARG00000088823 |
CGP |
7955 |
9:23304401-23315199  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0000AK_000I [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0000AK_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000B' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000F' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000J' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000R' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000W' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000X' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000Y' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000Z' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0010' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0011' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0012' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0013' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0014' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0015' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000016421' => 'crystallin, gamma M1',
'ENSDARG00000040738' => 'zgc:153846',
'ENSDARG00000018797' => 'crystallin, gamma MX, like 1',
'ENSDARG00000078876' => 'crystallin, gamma M2b',
'ENSDARG00000040735' => 'crystallin, gamma M6',
'ENSDARG00000093318' => 'si:dkey-57a22.15',
'ENSDARG00000040736' => 'crystallin, gamma M7',
'ENSDARG00000092764' => 'si:dkey-57a22.14',
'ENSDARG00000069831' => 'crystallin, gamma M2c',
'ENSDARG00000044875' => 'crystallin, gamma M2e',
'ENSDARG00000057460' => 'crystallin, gamma M2d13',
'ENSDARG00000053862' => 'crystallin, gamma MX',
'ENSDARG00000074001' => 'crystallin, gamma MX, like 2',
'ENSDARG00000069827' => 'crystallin, gamma M2d11',
'ENSDARG00000057536' => 'crystallin, gamma M2a',
'ENSDARG00000069792' => 'crystallin, gamma M2d5',
'ENSDARG00000073750' => 'crystallin, gamma M2d9',
'ENSDARG00000069801' => 'crystallin, gamma M2d12',
'ENSDARG00000091148' => 'crystallin, gamma M2d20',
'ENSDARG00000069817' => 'crystallin, gamma M2d8',
'ENSDARG00000087301' => 'crystallin, gamma M2d14',
'ENSDARG00000069826' => 'crystallin, gamma M2d15',
'ENSDARG00000086912' => 'crystallin, gamma M2d18',
'ENSDARG00000087164' => 'crystallin, gamma M2d4',
'ENSDARG00000073874' => 'crystallin, gamma M2d6',
'ENSDARG00000076693' => 'crystallin, gamma M2d17',
'ENSDARG00000076572' => 'crystallin, gamma M2d7',
'ENSDARG00000088823' => 'crystallin, gamma M2d3',
'ENSDARG00000076790' => 'crystallin, gamma M2d16',
'ENSDARG00000025943' => 'crystallin, gamma S3',
'ENSDARG00000041179' => 'crystallin, gamma M5',
'ENSDARG00000078134' => 'crystallin, gamma M2f',
'ENSDARG00000086658' => 'crystallin, gamma M2d21',
'ENSDARG00000087765' => 'crystallin, gamma M2d10',
'ENSDARG00000088687' => 'crystallin, gamma M2d17',
'ENSDARG00000086917' => 'crystallin, gamma M2d2',
'ENSDARG00000087324' => 'crystallin, gamma M2d1',
'ENSG00000118231' => 'crystallin, gamma D',
'ENSG00000163254' => 'crystallin, gamma C',
'ENSG00000182187' => 'crystallin, gamma B',
'ENSG00000224529' => null,
'ENSG00000168582' => 'crystallin, gamma A',
'ENSMUSG00000025952' => 'crystallin, gamma C',
'ENSMUSG00000073658' => 'crystallin, gamma B',
'ENSMUSG00000067299' => 'crystallin, gamma D',
'ENSMUSG00000070870' => 'crystallin, gamma E',
'ENSMUSG00000044429' => 'crystallin, gamma A',
'ENSMUSG00000100774' => 'predicted gene 7329',
'ENSMUSG00000100846' => 'predicted gene 28845'
),
'gene_name_arr' => array(
'ENSDARG00000016421' => 'crygm1',
'ENSDARG00000040738' => 'zgc:153846',
'ENSDARG00000018797' => 'crygmxl1',
'ENSDARG00000078876' => 'crygm2b',
'ENSDARG00000040735' => 'crygm6',
'ENSDARG00000093318' => 'si:dkey-57a22.15',
'ENSDARG00000040736' => 'crygm7',
'ENSDARG00000092764' => 'si:dkey-57a22.14',
'ENSDARG00000069831' => 'crygm2c',
'ENSDARG00000044875' => 'crygm2e',
'ENSDARG00000057460' => 'crygm2d13',
'ENSDARG00000053862' => 'crygmx',
'ENSDARG00000074001' => 'crygmxl2',
'ENSDARG00000069827' => 'crygm2d11',
'ENSDARG00000057536' => 'crygm2a',
'ENSDARG00000069792' => 'crygm2d5',
'ENSDARG00000073750' => 'crygm2d9',
'ENSDARG00000069801' => 'crygm2d12',
'ENSDARG00000091148' => 'crygm2d20',
'ENSDARG00000069817' => 'crygm2d8',
'ENSDARG00000087301' => 'crygm2d14',
'ENSDARG00000069826' => 'crygm2d15',
'ENSDARG00000086912' => 'crygm2d18',
'ENSDARG00000087164' => 'crygm2d4',
'ENSDARG00000073874' => 'crygm2d6',
'ENSDARG00000076693' => 'crygm2d17',
'ENSDARG00000076572' => 'crygm2d7',
'ENSDARG00000088823' => 'crygm2d3',
'ENSDARG00000076790' => 'crygm2d16',
'ENSDARG00000025943' => 'crygs3',
'ENSDARG00000041179' => 'crygm5',
'ENSDARG00000078134' => 'crygm2f',
'ENSDARG00000086658' => 'crygm2d21',
'ENSDARG00000087765' => 'crygm2d10',
'ENSDARG00000088687' => 'crygm2d17',
'ENSDARG00000086917' => 'crygm2d2',
'ENSDARG00000087324' => 'crygm2d1',
'ENSG00000118231' => 'CRYGD',
'ENSG00000163254' => 'CRYGC',
'ENSG00000182187' => 'CRYGB',
'ENSG00000224529' => 'AC093698.4',
'ENSG00000168582' => 'CRYGA',
'ENSMUSG00000025952' => 'Crygc',
'ENSMUSG00000073658' => 'Crygb',
'ENSMUSG00000067299' => 'Crygd',
'ENSMUSG00000070870' => 'Cryge',
'ENSMUSG00000044429' => 'Cryga',
'ENSMUSG00000100774' => 'RP23-348D4.1',
'ENSMUSG00000100846' => 'RP23-348D4.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 9 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 10 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 11 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 12 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 13 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 14 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 15 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 16 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 17 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 18 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 19 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 20 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 21 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 22 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 23 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 24 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 25 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 26 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 27 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 28 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 29 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 30 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 31 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 32 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 33 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 34 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 35 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 36 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 37 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 38 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 39 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 40 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 6 => 'Bladder',
(int) 7 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 55 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 70 => 'Ovary',
(int) 81 => 'Placenta',
(int) 85 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 133,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000101897' => array(
'start' => '23045257',
'end' => '23046164',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm1-001'
),
'ENSDART00000023059' => array(
'start' => '23050713',
'end' => '23051649',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zgc:153846-001'
),
'ENSDART00000101944' => array(
'start' => '23089517',
'end' => '23091003',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmxl1-001'
),
'ENSDART00000101938' => array(
'start' => '23101757',
'end' => '23102709',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2b-001'
),
'ENSDART00000040744' => array(
'start' => '23034157',
'end' => '23035123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm6-001'
),
'ENSDART00000091013' => array(
'start' => '23037287',
'end' => '23038178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-57a22.15-001'
),
'ENSDART00000059693' => array(
'start' => '23026437',
'end' => '23027402',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm7-001'
),
'ENSDART00000139189' => array(
'start' => '23026473',
'end' => '23027260',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'crygm7-002'
),
'ENSDART00000145297' => array(
'start' => '23026533',
'end' => '23027236',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm7-003'
),
'ENSDART00000132201' => array(
'start' => '23029806',
'end' => '23030494',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-57a22.14-001'
),
'ENSDART00000101952' => array(
'start' => '23055450',
'end' => '23056406',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2c-001'
),
'ENSDART00000065956' => array(
'start' => '23113467',
'end' => '23114199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2e-201'
),
'ENSDART00000136014' => array(
'start' => '23113583',
'end' => '23114334',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2e-001'
),
'ENSDART00000101928' => array(
'start' => '23124506',
'end' => '23125434',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d13-001'
),
'ENSDART00000123413' => array(
'start' => '23124508',
'end' => '23125670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d13-201'
),
'ENSDART00000105594' => array(
'start' => '32525268',
'end' => '32528780',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmx-001'
),
'ENSDART00000105596' => array(
'start' => '32525271',
'end' => '32528754',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmx-201'
),
'ENSDART00000075983' => array(
'start' => '32529778',
'end' => '32533156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmxl2-001'
),
'ENSDART00000133829' => array(
'start' => '32530171',
'end' => '32533104',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygmxl2-002'
),
'ENSDART00000146367' => array(
'start' => '32529926',
'end' => '32531405',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmxl2-003'
),
'ENSDART00000101923' => array(
'start' => '23131920',
'end' => '23132881',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d11-001'
),
'ENSDART00000135853' => array(
'start' => '23132032',
'end' => '23132836',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d11-002'
),
'ENSDART00000128486' => array(
'start' => '23108873',
'end' => '23109713',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2a-001'
),
'ENSDART00000101845' => array(
'start' => '23265223',
'end' => '23266247',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d5-001'
),
'ENSDART00000146460' => array(
'start' => '23265318',
'end' => '23266136',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d5-002'
),
'ENSDART00000111109' => array(
'start' => '23272358',
'end' => '23273397',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d9-001'
),
'ENSDART00000133093' => array(
'start' => '23272463',
'end' => '23273284',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d9-002'
),
'ENSDART00000101869' => array(
'start' => '23238022',
'end' => '23239027',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d12-001'
),
'ENSDART00000110656' => array(
'start' => '23245586',
'end' => '23246642',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d20-001'
),
'ENSDART00000133149' => array(
'start' => '23246063',
'end' => '23246693',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d20-002'
),
'ENSDART00000101902' => array(
'start' => '23168076',
'end' => '23168921',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d8-001'
),
'ENSDART00000110941' => array(
'start' => '23179886',
'end' => '23180912',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d14-001'
),
'ENSDART00000101916' => array(
'start' => '23149945',
'end' => '23150775',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d15-001'
),
'ENSDART00000108748' => array(
'start' => '23155098',
'end' => '23155935',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d18-001'
),
'ENSDART00000114943' => array(
'start' => '23277882',
'end' => '23278917',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d4-001'
),
'ENSDART00000101809' => array(
'start' => '23214761',
'end' => '23215741',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d6-001'
),
'ENSDART00000110933' => array(
'start' => '23220576',
'end' => '23221349',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d17-002'
),
'ENSDART00000132890' => array(
'start' => '23220376',
'end' => '23221462',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d17-001'
),
'ENSDART00000113174' => array(
'start' => '23304401',
'end' => '23305526',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d7-001'
),
'ENSDART00000135190' => array(
'start' => '23304624',
'end' => '23305408',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d7-002'
),
'ENSDART00000123763' => array(
'start' => '23314029',
'end' => '23314845',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d3-002'
),
'ENSDART00000146319' => array(
'start' => '23313816',
'end' => '23315199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d3-001'
),
'ENSDART00000114568' => array(
'start' => '23190627',
'end' => '23191670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d16-001'
),
'ENSDART00000146188' => array(
'start' => '23190813',
'end' => '23191628',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d16-002'
),
'ENSDART00000046116' => array(
'start' => '23398400',
'end' => '23399587',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygs3-001'
),
'ENSDART00000080054' => array(
'start' => '23384806',
'end' => '23399585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygs3-201'
),
'ENSDART00000060361' => array(
'start' => '23384282',
'end' => '23385625',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm5-001'
),
'ENSDART00000115384' => array(
'start' => '23378392',
'end' => '23385625',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm5-002'
),
'ENSDART00000101802' => array(
'start' => '23377940',
'end' => '23378845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2f-001'
),
'ENSDART00000124600' => array(
'start' => '23331820',
'end' => '23332643',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d21-002'
),
'ENSDART00000139101' => array(
'start' => '23331591',
'end' => '23332757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d21-001'
),
'ENSDART00000108719' => array(
'start' => '23343183',
'end' => '23344264',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d10-001'
),
'ENSDART00000125856' => array(
'start' => '23343326',
'end' => '23344647',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d10-201'
),
'ENSDART00000147358' => array(
'start' => '23343362',
'end' => '23344151',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d10-002'
),
'ENSDART00000124272' => array(
'start' => '23161847',
'end' => '23163133',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d17-001'
),
'ENSDART00000101810' => array(
'start' => '23350981',
'end' => '23351723',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d2-201'
),
'ENSDART00000129295' => array(
'start' => '23350824',
'end' => '23351856',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d2-001'
),
'ENSDART00000132029' => array(
'start' => '23350950',
'end' => '23351816',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d2-002'
),
'ENSDART00000134805' => array(
'start' => '23371923',
'end' => '23372927',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d1-001'
),
'ENST00000264376' => array(
'start' => '208121607',
'end' => '208124501',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGD-001'
),
'ENST00000282141' => array(
'start' => '208128137',
'end' => '208129830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGC-001'
),
'ENST00000260988' => array(
'start' => '208142573',
'end' => '208146168',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGB-001'
),
'ENST00000415505' => array(
'start' => '208135394',
'end' => '208137697',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC093698.4-001'
),
'ENST00000304502' => array(
'start' => '208160740',
'end' => '208163576',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGA-001'
),
'ENSMUST00000027089' => array(
'start' => '65071525',
'end' => '65073689',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygc-001'
),
'ENSMUST00000114064' => array(
'start' => '65071531',
'end' => '65073521',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygc-002'
),
'ENSMUST00000027090' => array(
'start' => '65080219',
'end' => '65082288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygb-001'
),
'ENSMUST00000045028' => array(
'start' => '65061872',
'end' => '65063452',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygd-001'
),
'ENSMUST00000127762' => array(
'start' => '65062731',
'end' => '65063452',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Crygd-002'
),
'ENSMUST00000146122' => array(
'start' => '65062345',
'end' => '65063301',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygd-003'
),
'ENSMUST00000087359' => array(
'start' => '65048554',
'end' => '65051149',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cryge-001'
),
'ENSMUST00000161960' => array(
'start' => '65048557',
'end' => '65051119',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cryge-002'
),
'ENSMUST00000061497' => array(
'start' => '65100389',
'end' => '65103373',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cryga-001'
),
'ENSMUST00000154012' => array(
'start' => '65100389',
'end' => '65103360',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cryga-002'
),
'ENSMUST00000185915' => array(
'start' => '65095227',
'end' => '65095436',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-348D4.1-001'
),
'ENSMUST00000144760' => array(
'start' => '65100619',
'end' => '65119558',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RP23-348D4.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0000AK_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000B' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000F' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000J' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000R' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000W' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000X' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000Y' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000Z' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0010' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0011' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0012' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0013' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0014' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0015' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0000AK_0002' => array(
'genes_in_region' => array(
'ENSDARG00000018797' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_0003' => array(
'genes_in_region' => array(
'ENSDARG00000093318' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_0004' => array(
'genes_in_region' => array(
'ENSDARG00000092764' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Heart',
(int) 2 => 'Brain'
)
),
'CIL_0000AK_0007' => array(
'genes_in_region' => array(
'ENSDARG00000074001' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Muscle',
(int) 3 => 'Brain',
(int) 4 => 'Brain'
)
),
'CIL_0000AK_000B' => array(
'genes_in_region' => array(
'ENSDARG00000069801' => array(
[maximum depth reached]
),
'ENSDARG00000091148' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Brain',
(int) 3 => 'Heart',
(int) 4 => 'Brain',
(int) 5 => 'Heart'
)
),
'CIL_0000AK_000C' => array(
'genes_in_region' => array(
'ENSDARG00000087301' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Muscle'
)
),
'CIL_0000AK_000F' => array(
'genes_in_region' => array(
'ENSDARG00000018797' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_000J' => array(
'genes_in_region' => array(
'ENSDARG00000069801' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Brain'
)
),
'CIL_0000AK_000R' => array(
'genes_in_region' => array(
'ENSDARG00000087301' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Muscle'
)
),
'CIL_0000AK_000W' => array(
'genes_in_region' => array(
'ENSDARG00000091148' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Brain',
(int) 2 => 'Heart',
(int) 3 => 'Brain',
(int) 4 => 'Heart'
)
),
'CIL_0000AK_000X' => array(
'genes_in_region' => array(
'ENSDARG00000092764' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_0000AK_000Y' => array(
'genes_in_region' => array(
'ENSDARG00000093318' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_000Z' => array(
'genes_in_region' => array(
'ENSG00000118231' => array(
[maximum depth reached]
),
'ENSG00000163254' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Testis'
)
),
'CIL_0000AK_0010' => array(
'genes_in_region' => array(
'ENSG00000163254' => array(
[maximum depth reached]
),
'ENSG00000182187' => array(
[maximum depth reached]
),
'ENSG00000224529' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis'
)
),
'CIL_0000AK_0011' => array(
'genes_in_region' => array(
'ENSG00000168582' => array(
[maximum depth reached]
),
'ENSG00000182187' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Testis'
)
),
'CIL_0000AK_0012' => array(
'genes_in_region' => array(
'ENSMUSG00000025952' => array(
[maximum depth reached]
),
'ENSMUSG00000073658' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Ovary',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Ovary'
)
),
'CIL_0000AK_0013' => array(
'genes_in_region' => array(
'ENSMUSG00000025952' => array(
[maximum depth reached]
),
'ENSMUSG00000067299' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Ovary',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Adrenal',
(int) 8 => 'Ovary',
(int) 9 => 'Adipose',
(int) 10 => 'Testis'
)
),
'CIL_0000AK_0014' => array(
'genes_in_region' => array(
'ENSMUSG00000067299' => array(
[maximum depth reached]
),
'ENSMUSG00000070870' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Ovary',
(int) 2 => 'Adipose',
(int) 3 => 'Testis',
(int) 4 => 'Adrenal',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Brain'
)
),
'CIL_0000AK_0015' => array(
'genes_in_region' => array(
'ENSMUSG00000044429' => array(
[maximum depth reached]
),
'ENSMUSG00000073658' => array(
[maximum depth reached]
),
'ENSMUSG00000100774' => array(
[maximum depth reached]
),
'ENSMUSG00000100846' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Colon',
(int) 2 => 'Lung',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Ovary',
(int) 6 => 'Bladder',
(int) 7 => 'Brain',
(int) 8 => 'Liver',
(int) 9 => 'Ovary',
(int) 10 => 'Breast'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000016421' => 'crystallin, gamma M1',
'ENSDARG00000040738' => 'zgc:153846',
'ENSDARG00000018797' => 'crystallin, gamma MX, like 1',
'ENSDARG00000078876' => 'crystallin, gamma M2b',
'ENSDARG00000040735' => 'crystallin, gamma M6',
'ENSDARG00000093318' => 'si:dkey-57a22.15',
'ENSDARG00000040736' => 'crystallin, gamma M7',
'ENSDARG00000092764' => 'si:dkey-57a22.14',
'ENSDARG00000069831' => 'crystallin, gamma M2c',
'ENSDARG00000044875' => 'crystallin, gamma M2e',
'ENSDARG00000057460' => 'crystallin, gamma M2d13',
'ENSDARG00000053862' => 'crystallin, gamma MX',
'ENSDARG00000074001' => 'crystallin, gamma MX, like 2',
'ENSDARG00000069827' => 'crystallin, gamma M2d11',
'ENSDARG00000057536' => 'crystallin, gamma M2a',
'ENSDARG00000069792' => 'crystallin, gamma M2d5',
'ENSDARG00000073750' => 'crystallin, gamma M2d9',
'ENSDARG00000069801' => 'crystallin, gamma M2d12',
'ENSDARG00000091148' => 'crystallin, gamma M2d20',
'ENSDARG00000069817' => 'crystallin, gamma M2d8',
'ENSDARG00000087301' => 'crystallin, gamma M2d14',
'ENSDARG00000069826' => 'crystallin, gamma M2d15',
'ENSDARG00000086912' => 'crystallin, gamma M2d18',
'ENSDARG00000087164' => 'crystallin, gamma M2d4',
'ENSDARG00000073874' => 'crystallin, gamma M2d6',
'ENSDARG00000076693' => 'crystallin, gamma M2d17',
'ENSDARG00000076572' => 'crystallin, gamma M2d7',
'ENSDARG00000088823' => 'crystallin, gamma M2d3',
'ENSDARG00000076790' => 'crystallin, gamma M2d16',
'ENSDARG00000025943' => 'crystallin, gamma S3',
'ENSDARG00000041179' => 'crystallin, gamma M5',
'ENSDARG00000078134' => 'crystallin, gamma M2f',
'ENSDARG00000086658' => 'crystallin, gamma M2d21',
'ENSDARG00000087765' => 'crystallin, gamma M2d10',
'ENSDARG00000088687' => 'crystallin, gamma M2d17',
'ENSDARG00000086917' => 'crystallin, gamma M2d2',
'ENSDARG00000087324' => 'crystallin, gamma M2d1',
'ENSG00000118231' => 'crystallin, gamma D',
'ENSG00000163254' => 'crystallin, gamma C',
'ENSG00000182187' => 'crystallin, gamma B',
'ENSG00000224529' => null,
'ENSG00000168582' => 'crystallin, gamma A',
'ENSMUSG00000025952' => 'crystallin, gamma C',
'ENSMUSG00000073658' => 'crystallin, gamma B',
'ENSMUSG00000067299' => 'crystallin, gamma D',
'ENSMUSG00000070870' => 'crystallin, gamma E',
'ENSMUSG00000044429' => 'crystallin, gamma A',
'ENSMUSG00000100774' => 'predicted gene 7329',
'ENSMUSG00000100846' => 'predicted gene 28845'
)
$gene_name_arr = array(
'ENSDARG00000016421' => 'crygm1',
'ENSDARG00000040738' => 'zgc:153846',
'ENSDARG00000018797' => 'crygmxl1',
'ENSDARG00000078876' => 'crygm2b',
'ENSDARG00000040735' => 'crygm6',
'ENSDARG00000093318' => 'si:dkey-57a22.15',
'ENSDARG00000040736' => 'crygm7',
'ENSDARG00000092764' => 'si:dkey-57a22.14',
'ENSDARG00000069831' => 'crygm2c',
'ENSDARG00000044875' => 'crygm2e',
'ENSDARG00000057460' => 'crygm2d13',
'ENSDARG00000053862' => 'crygmx',
'ENSDARG00000074001' => 'crygmxl2',
'ENSDARG00000069827' => 'crygm2d11',
'ENSDARG00000057536' => 'crygm2a',
'ENSDARG00000069792' => 'crygm2d5',
'ENSDARG00000073750' => 'crygm2d9',
'ENSDARG00000069801' => 'crygm2d12',
'ENSDARG00000091148' => 'crygm2d20',
'ENSDARG00000069817' => 'crygm2d8',
'ENSDARG00000087301' => 'crygm2d14',
'ENSDARG00000069826' => 'crygm2d15',
'ENSDARG00000086912' => 'crygm2d18',
'ENSDARG00000087164' => 'crygm2d4',
'ENSDARG00000073874' => 'crygm2d6',
'ENSDARG00000076693' => 'crygm2d17',
'ENSDARG00000076572' => 'crygm2d7',
'ENSDARG00000088823' => 'crygm2d3',
'ENSDARG00000076790' => 'crygm2d16',
'ENSDARG00000025943' => 'crygs3',
'ENSDARG00000041179' => 'crygm5',
'ENSDARG00000078134' => 'crygm2f',
'ENSDARG00000086658' => 'crygm2d21',
'ENSDARG00000087765' => 'crygm2d10',
'ENSDARG00000088687' => 'crygm2d17',
'ENSDARG00000086917' => 'crygm2d2',
'ENSDARG00000087324' => 'crygm2d1',
'ENSG00000118231' => 'CRYGD',
'ENSG00000163254' => 'CRYGC',
'ENSG00000182187' => 'CRYGB',
'ENSG00000224529' => 'AC093698.4',
'ENSG00000168582' => 'CRYGA',
'ENSMUSG00000025952' => 'Crygc',
'ENSMUSG00000073658' => 'Crygb',
'ENSMUSG00000067299' => 'Crygd',
'ENSMUSG00000070870' => 'Cryge',
'ENSMUSG00000044429' => 'Cryga',
'ENSMUSG00000100774' => 'RP23-348D4.1',
'ENSMUSG00000100846' => 'RP23-348D4.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0001',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23045257',
'seq_end' => '23051649',
'region_length' => '6392',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000016421-ENSDARG00000040738'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0002',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23089517',
'seq_end' => '23102709',
'region_length' => '13192',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000018797-ENSDARG00000078876'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0003',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23034157',
'seq_end' => '23038178',
'region_length' => '4021',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000040735-ENSDARG00000093318'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0004',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23026437',
'seq_end' => '23030494',
'region_length' => '4057',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000040736-ENSDARG00000092764'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0005',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23050713',
'seq_end' => '23056406',
'region_length' => '5693',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000040738-ENSDARG00000069831'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0006',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23113467',
'seq_end' => '23125670',
'region_length' => '12203',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000044875-ENSDARG00000057460'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0007',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '32525268',
'seq_end' => '32533156',
'region_length' => '7888',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000053862-ENSDARG00000074001'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0008',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23124506',
'seq_end' => '23132881',
'region_length' => '8375',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000057460-ENSDARG00000069827'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0009',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23108873',
'seq_end' => '23114334',
'region_length' => '5461',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000057536-ENSDARG00000044875'
)
),
(int) 9 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000A',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23265223',
'seq_end' => '23273397',
'region_length' => '8174',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000069792-ENSDARG00000073750'
)
),
(int) 10 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000B',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23238022',
'seq_end' => '23246693',
'region_length' => '8671',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000069801-ENSDARG00000091148'
)
),
(int) 11 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000C',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23168076',
'seq_end' => '23180912',
'region_length' => '12836',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000069817-ENSDARG00000087301'
)
),
(int) 12 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000D',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23149945',
'seq_end' => '23155935',
'region_length' => '5990',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000069826-ENSDARG00000086912'
)
),
(int) 13 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000E',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23131920',
'seq_end' => '23150775',
'region_length' => '18855',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000069827-ENSDARG00000069826'
)
),
(int) 14 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000F',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23055450',
'seq_end' => '23091003',
'region_length' => '35553',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000069831-ENSDARG00000018797'
)
),
(int) 15 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000G',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23272358',
'seq_end' => '23278917',
'region_length' => '6559',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000073750-ENSDARG00000087164'
)
),
(int) 16 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000H',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23214761',
'seq_end' => '23221462',
'region_length' => '6701',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000073874-ENSDARG00000076693'
)
),
(int) 17 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000I',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23304401',
'seq_end' => '23315199',
'region_length' => '10798',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000076572-ENSDARG00000088823'
)
),
(int) 18 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000J',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23220376',
'seq_end' => '23239027',
'region_length' => '18651',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000076693-ENSDARG00000069801'
)
),
(int) 19 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000K',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23190627',
'seq_end' => '23215741',
'region_length' => '25114',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000076790-ENSDARG00000073874'
)
),
(int) 20 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000L',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23377940',
'seq_end' => '23385625',
'region_length' => '7685',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000078134-ENSDARG00000041179'
)
),
(int) 21 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000M',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23101757',
'seq_end' => '23109713',
'region_length' => '7956',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000078876-ENSDARG00000057536'
)
),
(int) 22 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000N',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23331591',
'seq_end' => '23344647',
'region_length' => '13056',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000086658-ENSDARG00000087765'
)
),
(int) 23 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000O',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23155098',
'seq_end' => '23163133',
'region_length' => '8035',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000086912-ENSDARG00000088687'
)
),
(int) 24 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000P',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23350824',
'seq_end' => '23372927',
'region_length' => '22103',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000086917-ENSDARG00000087324'
)
),
(int) 25 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000Q',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23277882',
'seq_end' => '23305526',
'region_length' => '27644',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000087164-ENSDARG00000076572'
)
),
(int) 26 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000R',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23179886',
'seq_end' => '23191670',
'region_length' => '11784',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000087301-ENSDARG00000076790'
)
),
(int) 27 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000S',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23371923',
'seq_end' => '23378845',
'region_length' => '6922',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000087324-ENSDARG00000078134'
)
),
(int) 28 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000T',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23343183',
'seq_end' => '23351856',
'region_length' => '8673',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000087765-ENSDARG00000086917'
)
),
(int) 29 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000U',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23161847',
'seq_end' => '23168921',
'region_length' => '7074',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000088687-ENSDARG00000069817'
)
),
(int) 30 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000V',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23313816',
'seq_end' => '23332757',
'region_length' => '18941',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000088823-ENSDARG00000086658'
)
),
(int) 31 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000W',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23245586',
'seq_end' => '23266247',
'region_length' => '20661',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000091148-ENSDARG00000069792'
)
),
(int) 32 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000X',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23029806',
'seq_end' => '23035123',
'region_length' => '5317',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000092764-ENSDARG00000040735'
)
),
(int) 33 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000Y',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23037287',
'seq_end' => '23046164',
'region_length' => '8877',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000093318-ENSDARG00000016421'
)
),
(int) 34 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000Z',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '208121607',
'seq_end' => '208129830',
'region_length' => '8223',
'region_type' => 'CGP',
'el_id' => 'ENSG00000118231-ENSG00000163254'
)
),
(int) 35 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0010',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '208128137',
'seq_end' => '208146168',
'region_length' => '18031',
'region_type' => 'CGP',
'el_id' => 'ENSG00000163254-ENSG00000182187'
)
),
(int) 36 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0011',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '208142573',
'seq_end' => '208163576',
'region_length' => '21003',
'region_type' => 'CGP',
'el_id' => 'ENSG00000182187-ENSG00000168582'
)
),
(int) 37 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0012',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '65071525',
'seq_end' => '65082288',
'region_length' => '10763',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000025952-ENSMUSG00000073658'
)
),
(int) 38 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0013',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '65061872',
'seq_end' => '65073689',
'region_length' => '11817',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000067299-ENSMUSG00000025952'
)
),
(int) 39 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0014',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '65048554',
'seq_end' => '65063452',
'region_length' => '14898',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000070870-ENSMUSG00000067299'
)
),
(int) 40 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0015',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '65080219',
'seq_end' => '65103373',
'region_length' => '23154',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000073658-ENSMUSG00000044429'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 6 => 'Bladder',
(int) 7 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 55 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 70 => 'Ovary',
(int) 81 => 'Placenta',
(int) 85 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 133
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000101897' => array(
'start' => '23045257',
'end' => '23046164',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm1-001'
),
'ENSDART00000023059' => array(
'start' => '23050713',
'end' => '23051649',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zgc:153846-001'
),
'ENSDART00000101944' => array(
'start' => '23089517',
'end' => '23091003',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmxl1-001'
),
'ENSDART00000101938' => array(
'start' => '23101757',
'end' => '23102709',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2b-001'
),
'ENSDART00000040744' => array(
'start' => '23034157',
'end' => '23035123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm6-001'
),
'ENSDART00000091013' => array(
'start' => '23037287',
'end' => '23038178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-57a22.15-001'
),
'ENSDART00000059693' => array(
'start' => '23026437',
'end' => '23027402',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm7-001'
),
'ENSDART00000139189' => array(
'start' => '23026473',
'end' => '23027260',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'crygm7-002'
),
'ENSDART00000145297' => array(
'start' => '23026533',
'end' => '23027236',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm7-003'
),
'ENSDART00000132201' => array(
'start' => '23029806',
'end' => '23030494',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-57a22.14-001'
),
'ENSDART00000101952' => array(
'start' => '23055450',
'end' => '23056406',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2c-001'
),
'ENSDART00000065956' => array(
'start' => '23113467',
'end' => '23114199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2e-201'
),
'ENSDART00000136014' => array(
'start' => '23113583',
'end' => '23114334',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2e-001'
),
'ENSDART00000101928' => array(
'start' => '23124506',
'end' => '23125434',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d13-001'
),
'ENSDART00000123413' => array(
'start' => '23124508',
'end' => '23125670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d13-201'
),
'ENSDART00000105594' => array(
'start' => '32525268',
'end' => '32528780',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmx-001'
),
'ENSDART00000105596' => array(
'start' => '32525271',
'end' => '32528754',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmx-201'
),
'ENSDART00000075983' => array(
'start' => '32529778',
'end' => '32533156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmxl2-001'
),
'ENSDART00000133829' => array(
'start' => '32530171',
'end' => '32533104',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygmxl2-002'
),
'ENSDART00000146367' => array(
'start' => '32529926',
'end' => '32531405',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmxl2-003'
),
'ENSDART00000101923' => array(
'start' => '23131920',
'end' => '23132881',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d11-001'
),
'ENSDART00000135853' => array(
'start' => '23132032',
'end' => '23132836',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d11-002'
),
'ENSDART00000128486' => array(
'start' => '23108873',
'end' => '23109713',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2a-001'
),
'ENSDART00000101845' => array(
'start' => '23265223',
'end' => '23266247',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d5-001'
),
'ENSDART00000146460' => array(
'start' => '23265318',
'end' => '23266136',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d5-002'
),
'ENSDART00000111109' => array(
'start' => '23272358',
'end' => '23273397',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d9-001'
),
'ENSDART00000133093' => array(
'start' => '23272463',
'end' => '23273284',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d9-002'
),
'ENSDART00000101869' => array(
'start' => '23238022',
'end' => '23239027',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d12-001'
),
'ENSDART00000110656' => array(
'start' => '23245586',
'end' => '23246642',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d20-001'
),
'ENSDART00000133149' => array(
'start' => '23246063',
'end' => '23246693',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d20-002'
),
'ENSDART00000101902' => array(
'start' => '23168076',
'end' => '23168921',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d8-001'
),
'ENSDART00000110941' => array(
'start' => '23179886',
'end' => '23180912',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d14-001'
),
'ENSDART00000101916' => array(
'start' => '23149945',
'end' => '23150775',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d15-001'
),
'ENSDART00000108748' => array(
'start' => '23155098',
'end' => '23155935',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d18-001'
),
'ENSDART00000114943' => array(
'start' => '23277882',
'end' => '23278917',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d4-001'
),
'ENSDART00000101809' => array(
'start' => '23214761',
'end' => '23215741',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d6-001'
),
'ENSDART00000110933' => array(
'start' => '23220576',
'end' => '23221349',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d17-002'
),
'ENSDART00000132890' => array(
'start' => '23220376',
'end' => '23221462',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d17-001'
),
'ENSDART00000113174' => array(
'start' => '23304401',
'end' => '23305526',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d7-001'
),
'ENSDART00000135190' => array(
'start' => '23304624',
'end' => '23305408',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d7-002'
),
'ENSDART00000123763' => array(
'start' => '23314029',
'end' => '23314845',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d3-002'
),
'ENSDART00000146319' => array(
'start' => '23313816',
'end' => '23315199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d3-001'
),
'ENSDART00000114568' => array(
'start' => '23190627',
'end' => '23191670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d16-001'
),
'ENSDART00000146188' => array(
'start' => '23190813',
'end' => '23191628',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d16-002'
),
'ENSDART00000046116' => array(
'start' => '23398400',
'end' => '23399587',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygs3-001'
),
'ENSDART00000080054' => array(
'start' => '23384806',
'end' => '23399585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygs3-201'
),
'ENSDART00000060361' => array(
'start' => '23384282',
'end' => '23385625',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm5-001'
),
'ENSDART00000115384' => array(
'start' => '23378392',
'end' => '23385625',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm5-002'
),
'ENSDART00000101802' => array(
'start' => '23377940',
'end' => '23378845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2f-001'
),
'ENSDART00000124600' => array(
'start' => '23331820',
'end' => '23332643',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d21-002'
),
'ENSDART00000139101' => array(
'start' => '23331591',
'end' => '23332757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d21-001'
),
'ENSDART00000108719' => array(
'start' => '23343183',
'end' => '23344264',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d10-001'
),
'ENSDART00000125856' => array(
'start' => '23343326',
'end' => '23344647',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d10-201'
),
'ENSDART00000147358' => array(
'start' => '23343362',
'end' => '23344151',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d10-002'
),
'ENSDART00000124272' => array(
'start' => '23161847',
'end' => '23163133',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d17-001'
),
'ENSDART00000101810' => array(
'start' => '23350981',
'end' => '23351723',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d2-201'
),
'ENSDART00000129295' => array(
'start' => '23350824',
'end' => '23351856',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d2-001'
),
'ENSDART00000132029' => array(
'start' => '23350950',
'end' => '23351816',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d2-002'
),
'ENSDART00000134805' => array(
'start' => '23371923',
'end' => '23372927',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d1-001'
),
'ENST00000264376' => array(
'start' => '208121607',
'end' => '208124501',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGD-001'
),
'ENST00000282141' => array(
'start' => '208128137',
'end' => '208129830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGC-001'
),
'ENST00000260988' => array(
'start' => '208142573',
'end' => '208146168',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGB-001'
),
'ENST00000415505' => array(
'start' => '208135394',
'end' => '208137697',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC093698.4-001'
),
'ENST00000304502' => array(
'start' => '208160740',
'end' => '208163576',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGA-001'
),
'ENSMUST00000027089' => array(
'start' => '65071525',
'end' => '65073689',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygc-001'
),
'ENSMUST00000114064' => array(
'start' => '65071531',
'end' => '65073521',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygc-002'
),
'ENSMUST00000027090' => array(
'start' => '65080219',
'end' => '65082288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygb-001'
),
'ENSMUST00000045028' => array(
'start' => '65061872',
'end' => '65063452',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygd-001'
),
'ENSMUST00000127762' => array(
'start' => '65062731',
'end' => '65063452',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Crygd-002'
),
'ENSMUST00000146122' => array(
'start' => '65062345',
'end' => '65063301',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygd-003'
),
'ENSMUST00000087359' => array(
'start' => '65048554',
'end' => '65051149',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cryge-001'
),
'ENSMUST00000161960' => array(
'start' => '65048557',
'end' => '65051119',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cryge-002'
),
'ENSMUST00000061497' => array(
'start' => '65100389',
'end' => '65103373',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cryga-001'
),
'ENSMUST00000154012' => array(
'start' => '65100389',
'end' => '65103360',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cryga-002'
),
'ENSMUST00000185915' => array(
'start' => '65095227',
'end' => '65095436',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-348D4.1-001'
),
'ENSMUST00000144760' => array(
'start' => '65100619',
'end' => '65119558',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RP23-348D4.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0000AK_0002' => array(
'genes_in_region' => array(
'ENSDARG00000018797' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_0003' => array(
'genes_in_region' => array(
'ENSDARG00000093318' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_0004' => array(
'genes_in_region' => array(
'ENSDARG00000092764' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Heart',
(int) 2 => 'Brain'
)
),
'CIL_0000AK_0007' => array(
'genes_in_region' => array(
'ENSDARG00000074001' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Muscle',
(int) 3 => 'Brain',
(int) 4 => 'Brain'
)
),
'CIL_0000AK_000B' => array(
'genes_in_region' => array(
'ENSDARG00000069801' => array(
[maximum depth reached]
),
'ENSDARG00000091148' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Brain',
(int) 3 => 'Heart',
(int) 4 => 'Brain',
(int) 5 => 'Heart'
)
),
'CIL_0000AK_000C' => array(
'genes_in_region' => array(
'ENSDARG00000087301' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Muscle'
)
),
'CIL_0000AK_000F' => array(
'genes_in_region' => array(
'ENSDARG00000018797' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_000J' => array(
'genes_in_region' => array(
'ENSDARG00000069801' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Brain'
)
),
'CIL_0000AK_000R' => array(
'genes_in_region' => array(
'ENSDARG00000087301' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Muscle'
)
),
'CIL_0000AK_000W' => array(
'genes_in_region' => array(
'ENSDARG00000091148' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Brain',
(int) 2 => 'Heart',
(int) 3 => 'Brain',
(int) 4 => 'Heart'
)
),
'CIL_0000AK_000X' => array(
'genes_in_region' => array(
'ENSDARG00000092764' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_0000AK_000Y' => array(
'genes_in_region' => array(
'ENSDARG00000093318' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_000Z' => array(
'genes_in_region' => array(
'ENSG00000118231' => array(
[maximum depth reached]
),
'ENSG00000163254' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Testis'
)
),
'CIL_0000AK_0010' => array(
'genes_in_region' => array(
'ENSG00000163254' => array(
[maximum depth reached]
),
'ENSG00000182187' => array(
[maximum depth reached]
),
'ENSG00000224529' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis'
)
),
'CIL_0000AK_0011' => array(
'genes_in_region' => array(
'ENSG00000168582' => array(
[maximum depth reached]
),
'ENSG00000182187' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Testis'
)
),
'CIL_0000AK_0012' => array(
'genes_in_region' => array(
'ENSMUSG00000025952' => array(
[maximum depth reached]
),
'ENSMUSG00000073658' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Ovary',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Ovary'
)
),
'CIL_0000AK_0013' => array(
'genes_in_region' => array(
'ENSMUSG00000025952' => array(
[maximum depth reached]
),
'ENSMUSG00000067299' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Ovary',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Adrenal',
(int) 8 => 'Ovary',
(int) 9 => 'Adipose',
(int) 10 => 'Testis'
)
),
'CIL_0000AK_0014' => array(
'genes_in_region' => array(
'ENSMUSG00000067299' => array(
[maximum depth reached]
),
'ENSMUSG00000070870' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Ovary',
(int) 2 => 'Adipose',
(int) 3 => 'Testis',
(int) 4 => 'Adrenal',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Brain'
)
),
'CIL_0000AK_0015' => array(
'genes_in_region' => array(
'ENSMUSG00000044429' => array(
[maximum depth reached]
),
'ENSMUSG00000073658' => array(
[maximum depth reached]
),
'ENSMUSG00000100774' => array(
[maximum depth reached]
),
'ENSMUSG00000100846' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Colon',
(int) 2 => 'Lung',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Ovary',
(int) 6 => 'Bladder',
(int) 7 => 'Brain',
(int) 8 => 'Liver',
(int) 9 => 'Ovary',
(int) 10 => 'Breast'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000I',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23304401',
'seq_end' => '23315199',
'region_length' => '10798',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000076572-ENSDARG00000088823'
)
)
$gene_el = array(
'ENSDART00000101944' => array(
'Brain' => array(
'average_FPKM' => '0.098',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '2.739',
'stddev_FPKM' => '1.64'
)
)
)
$gene_key = 'ENSDARG00000018797'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.098',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '2.739',
'stddev_FPKM' => '1.64'
)
)
$tran_key = 'ENSDART00000101944'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0000AK_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000B' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000F' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000J' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000R' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000W' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000X' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000Y' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000Z' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0010' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0011' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0012' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0013' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0014' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0015' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000016421' => 'crystallin, gamma M1',
'ENSDARG00000040738' => 'zgc:153846',
'ENSDARG00000018797' => 'crystallin, gamma MX, like 1',
'ENSDARG00000078876' => 'crystallin, gamma M2b',
'ENSDARG00000040735' => 'crystallin, gamma M6',
'ENSDARG00000093318' => 'si:dkey-57a22.15',
'ENSDARG00000040736' => 'crystallin, gamma M7',
'ENSDARG00000092764' => 'si:dkey-57a22.14',
'ENSDARG00000069831' => 'crystallin, gamma M2c',
'ENSDARG00000044875' => 'crystallin, gamma M2e',
'ENSDARG00000057460' => 'crystallin, gamma M2d13',
'ENSDARG00000053862' => 'crystallin, gamma MX',
'ENSDARG00000074001' => 'crystallin, gamma MX, like 2',
'ENSDARG00000069827' => 'crystallin, gamma M2d11',
'ENSDARG00000057536' => 'crystallin, gamma M2a',
'ENSDARG00000069792' => 'crystallin, gamma M2d5',
'ENSDARG00000073750' => 'crystallin, gamma M2d9',
'ENSDARG00000069801' => 'crystallin, gamma M2d12',
'ENSDARG00000091148' => 'crystallin, gamma M2d20',
'ENSDARG00000069817' => 'crystallin, gamma M2d8',
'ENSDARG00000087301' => 'crystallin, gamma M2d14',
'ENSDARG00000069826' => 'crystallin, gamma M2d15',
'ENSDARG00000086912' => 'crystallin, gamma M2d18',
'ENSDARG00000087164' => 'crystallin, gamma M2d4',
'ENSDARG00000073874' => 'crystallin, gamma M2d6',
'ENSDARG00000076693' => 'crystallin, gamma M2d17',
'ENSDARG00000076572' => 'crystallin, gamma M2d7',
'ENSDARG00000088823' => 'crystallin, gamma M2d3',
'ENSDARG00000076790' => 'crystallin, gamma M2d16',
'ENSDARG00000025943' => 'crystallin, gamma S3',
'ENSDARG00000041179' => 'crystallin, gamma M5',
'ENSDARG00000078134' => 'crystallin, gamma M2f',
'ENSDARG00000086658' => 'crystallin, gamma M2d21',
'ENSDARG00000087765' => 'crystallin, gamma M2d10',
'ENSDARG00000088687' => 'crystallin, gamma M2d17',
'ENSDARG00000086917' => 'crystallin, gamma M2d2',
'ENSDARG00000087324' => 'crystallin, gamma M2d1',
'ENSG00000118231' => 'crystallin, gamma D',
'ENSG00000163254' => 'crystallin, gamma C',
'ENSG00000182187' => 'crystallin, gamma B',
'ENSG00000224529' => null,
'ENSG00000168582' => 'crystallin, gamma A',
'ENSMUSG00000025952' => 'crystallin, gamma C',
'ENSMUSG00000073658' => 'crystallin, gamma B',
'ENSMUSG00000067299' => 'crystallin, gamma D',
'ENSMUSG00000070870' => 'crystallin, gamma E',
'ENSMUSG00000044429' => 'crystallin, gamma A',
'ENSMUSG00000100774' => 'predicted gene 7329',
'ENSMUSG00000100846' => 'predicted gene 28845'
),
'gene_name_arr' => array(
'ENSDARG00000016421' => 'crygm1',
'ENSDARG00000040738' => 'zgc:153846',
'ENSDARG00000018797' => 'crygmxl1',
'ENSDARG00000078876' => 'crygm2b',
'ENSDARG00000040735' => 'crygm6',
'ENSDARG00000093318' => 'si:dkey-57a22.15',
'ENSDARG00000040736' => 'crygm7',
'ENSDARG00000092764' => 'si:dkey-57a22.14',
'ENSDARG00000069831' => 'crygm2c',
'ENSDARG00000044875' => 'crygm2e',
'ENSDARG00000057460' => 'crygm2d13',
'ENSDARG00000053862' => 'crygmx',
'ENSDARG00000074001' => 'crygmxl2',
'ENSDARG00000069827' => 'crygm2d11',
'ENSDARG00000057536' => 'crygm2a',
'ENSDARG00000069792' => 'crygm2d5',
'ENSDARG00000073750' => 'crygm2d9',
'ENSDARG00000069801' => 'crygm2d12',
'ENSDARG00000091148' => 'crygm2d20',
'ENSDARG00000069817' => 'crygm2d8',
'ENSDARG00000087301' => 'crygm2d14',
'ENSDARG00000069826' => 'crygm2d15',
'ENSDARG00000086912' => 'crygm2d18',
'ENSDARG00000087164' => 'crygm2d4',
'ENSDARG00000073874' => 'crygm2d6',
'ENSDARG00000076693' => 'crygm2d17',
'ENSDARG00000076572' => 'crygm2d7',
'ENSDARG00000088823' => 'crygm2d3',
'ENSDARG00000076790' => 'crygm2d16',
'ENSDARG00000025943' => 'crygs3',
'ENSDARG00000041179' => 'crygm5',
'ENSDARG00000078134' => 'crygm2f',
'ENSDARG00000086658' => 'crygm2d21',
'ENSDARG00000087765' => 'crygm2d10',
'ENSDARG00000088687' => 'crygm2d17',
'ENSDARG00000086917' => 'crygm2d2',
'ENSDARG00000087324' => 'crygm2d1',
'ENSG00000118231' => 'CRYGD',
'ENSG00000163254' => 'CRYGC',
'ENSG00000182187' => 'CRYGB',
'ENSG00000224529' => 'AC093698.4',
'ENSG00000168582' => 'CRYGA',
'ENSMUSG00000025952' => 'Crygc',
'ENSMUSG00000073658' => 'Crygb',
'ENSMUSG00000067299' => 'Crygd',
'ENSMUSG00000070870' => 'Cryge',
'ENSMUSG00000044429' => 'Cryga',
'ENSMUSG00000100774' => 'RP23-348D4.1',
'ENSMUSG00000100846' => 'RP23-348D4.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 9 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 10 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 11 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 12 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 13 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 14 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 15 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 16 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 17 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 18 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 19 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 20 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 21 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 22 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 23 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 24 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 25 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 26 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 27 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 28 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 29 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 30 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 31 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 32 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 33 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 34 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 35 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 36 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 37 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 38 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 39 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 40 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 6 => 'Bladder',
(int) 7 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 55 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 70 => 'Ovary',
(int) 81 => 'Placenta',
(int) 85 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 133,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000101897' => array(
'start' => '23045257',
'end' => '23046164',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm1-001'
),
'ENSDART00000023059' => array(
'start' => '23050713',
'end' => '23051649',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zgc:153846-001'
),
'ENSDART00000101944' => array(
'start' => '23089517',
'end' => '23091003',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmxl1-001'
),
'ENSDART00000101938' => array(
'start' => '23101757',
'end' => '23102709',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2b-001'
),
'ENSDART00000040744' => array(
'start' => '23034157',
'end' => '23035123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm6-001'
),
'ENSDART00000091013' => array(
'start' => '23037287',
'end' => '23038178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-57a22.15-001'
),
'ENSDART00000059693' => array(
'start' => '23026437',
'end' => '23027402',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm7-001'
),
'ENSDART00000139189' => array(
'start' => '23026473',
'end' => '23027260',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'crygm7-002'
),
'ENSDART00000145297' => array(
'start' => '23026533',
'end' => '23027236',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm7-003'
),
'ENSDART00000132201' => array(
'start' => '23029806',
'end' => '23030494',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-57a22.14-001'
),
'ENSDART00000101952' => array(
'start' => '23055450',
'end' => '23056406',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2c-001'
),
'ENSDART00000065956' => array(
'start' => '23113467',
'end' => '23114199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2e-201'
),
'ENSDART00000136014' => array(
'start' => '23113583',
'end' => '23114334',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2e-001'
),
'ENSDART00000101928' => array(
'start' => '23124506',
'end' => '23125434',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d13-001'
),
'ENSDART00000123413' => array(
'start' => '23124508',
'end' => '23125670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d13-201'
),
'ENSDART00000105594' => array(
'start' => '32525268',
'end' => '32528780',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmx-001'
),
'ENSDART00000105596' => array(
'start' => '32525271',
'end' => '32528754',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmx-201'
),
'ENSDART00000075983' => array(
'start' => '32529778',
'end' => '32533156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmxl2-001'
),
'ENSDART00000133829' => array(
'start' => '32530171',
'end' => '32533104',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygmxl2-002'
),
'ENSDART00000146367' => array(
'start' => '32529926',
'end' => '32531405',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmxl2-003'
),
'ENSDART00000101923' => array(
'start' => '23131920',
'end' => '23132881',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d11-001'
),
'ENSDART00000135853' => array(
'start' => '23132032',
'end' => '23132836',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d11-002'
),
'ENSDART00000128486' => array(
'start' => '23108873',
'end' => '23109713',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2a-001'
),
'ENSDART00000101845' => array(
'start' => '23265223',
'end' => '23266247',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d5-001'
),
'ENSDART00000146460' => array(
'start' => '23265318',
'end' => '23266136',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d5-002'
),
'ENSDART00000111109' => array(
'start' => '23272358',
'end' => '23273397',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d9-001'
),
'ENSDART00000133093' => array(
'start' => '23272463',
'end' => '23273284',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d9-002'
),
'ENSDART00000101869' => array(
'start' => '23238022',
'end' => '23239027',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d12-001'
),
'ENSDART00000110656' => array(
'start' => '23245586',
'end' => '23246642',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d20-001'
),
'ENSDART00000133149' => array(
'start' => '23246063',
'end' => '23246693',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d20-002'
),
'ENSDART00000101902' => array(
'start' => '23168076',
'end' => '23168921',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d8-001'
),
'ENSDART00000110941' => array(
'start' => '23179886',
'end' => '23180912',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d14-001'
),
'ENSDART00000101916' => array(
'start' => '23149945',
'end' => '23150775',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d15-001'
),
'ENSDART00000108748' => array(
'start' => '23155098',
'end' => '23155935',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d18-001'
),
'ENSDART00000114943' => array(
'start' => '23277882',
'end' => '23278917',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d4-001'
),
'ENSDART00000101809' => array(
'start' => '23214761',
'end' => '23215741',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d6-001'
),
'ENSDART00000110933' => array(
'start' => '23220576',
'end' => '23221349',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d17-002'
),
'ENSDART00000132890' => array(
'start' => '23220376',
'end' => '23221462',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d17-001'
),
'ENSDART00000113174' => array(
'start' => '23304401',
'end' => '23305526',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d7-001'
),
'ENSDART00000135190' => array(
'start' => '23304624',
'end' => '23305408',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d7-002'
),
'ENSDART00000123763' => array(
'start' => '23314029',
'end' => '23314845',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d3-002'
),
'ENSDART00000146319' => array(
'start' => '23313816',
'end' => '23315199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d3-001'
),
'ENSDART00000114568' => array(
'start' => '23190627',
'end' => '23191670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d16-001'
),
'ENSDART00000146188' => array(
'start' => '23190813',
'end' => '23191628',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d16-002'
),
'ENSDART00000046116' => array(
'start' => '23398400',
'end' => '23399587',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygs3-001'
),
'ENSDART00000080054' => array(
'start' => '23384806',
'end' => '23399585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygs3-201'
),
'ENSDART00000060361' => array(
'start' => '23384282',
'end' => '23385625',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm5-001'
),
'ENSDART00000115384' => array(
'start' => '23378392',
'end' => '23385625',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm5-002'
),
'ENSDART00000101802' => array(
'start' => '23377940',
'end' => '23378845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2f-001'
),
'ENSDART00000124600' => array(
'start' => '23331820',
'end' => '23332643',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d21-002'
),
'ENSDART00000139101' => array(
'start' => '23331591',
'end' => '23332757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d21-001'
),
'ENSDART00000108719' => array(
'start' => '23343183',
'end' => '23344264',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d10-001'
),
'ENSDART00000125856' => array(
'start' => '23343326',
'end' => '23344647',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d10-201'
),
'ENSDART00000147358' => array(
'start' => '23343362',
'end' => '23344151',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d10-002'
),
'ENSDART00000124272' => array(
'start' => '23161847',
'end' => '23163133',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d17-001'
),
'ENSDART00000101810' => array(
'start' => '23350981',
'end' => '23351723',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d2-201'
),
'ENSDART00000129295' => array(
'start' => '23350824',
'end' => '23351856',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d2-001'
),
'ENSDART00000132029' => array(
'start' => '23350950',
'end' => '23351816',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d2-002'
),
'ENSDART00000134805' => array(
'start' => '23371923',
'end' => '23372927',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d1-001'
),
'ENST00000264376' => array(
'start' => '208121607',
'end' => '208124501',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGD-001'
),
'ENST00000282141' => array(
'start' => '208128137',
'end' => '208129830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGC-001'
),
'ENST00000260988' => array(
'start' => '208142573',
'end' => '208146168',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGB-001'
),
'ENST00000415505' => array(
'start' => '208135394',
'end' => '208137697',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC093698.4-001'
),
'ENST00000304502' => array(
'start' => '208160740',
'end' => '208163576',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGA-001'
),
'ENSMUST00000027089' => array(
'start' => '65071525',
'end' => '65073689',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygc-001'
),
'ENSMUST00000114064' => array(
'start' => '65071531',
'end' => '65073521',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygc-002'
),
'ENSMUST00000027090' => array(
'start' => '65080219',
'end' => '65082288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygb-001'
),
'ENSMUST00000045028' => array(
'start' => '65061872',
'end' => '65063452',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygd-001'
),
'ENSMUST00000127762' => array(
'start' => '65062731',
'end' => '65063452',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Crygd-002'
),
'ENSMUST00000146122' => array(
'start' => '65062345',
'end' => '65063301',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygd-003'
),
'ENSMUST00000087359' => array(
'start' => '65048554',
'end' => '65051149',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cryge-001'
),
'ENSMUST00000161960' => array(
'start' => '65048557',
'end' => '65051119',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cryge-002'
),
'ENSMUST00000061497' => array(
'start' => '65100389',
'end' => '65103373',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cryga-001'
),
'ENSMUST00000154012' => array(
'start' => '65100389',
'end' => '65103360',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cryga-002'
),
'ENSMUST00000185915' => array(
'start' => '65095227',
'end' => '65095436',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-348D4.1-001'
),
'ENSMUST00000144760' => array(
'start' => '65100619',
'end' => '65119558',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RP23-348D4.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0000AK_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000B' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000F' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000J' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000R' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000W' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000X' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000Y' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_000Z' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0010' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0011' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0012' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0013' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0014' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000AK_0015' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0000AK_0002' => array(
'genes_in_region' => array(
'ENSDARG00000018797' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_0003' => array(
'genes_in_region' => array(
'ENSDARG00000093318' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_0004' => array(
'genes_in_region' => array(
'ENSDARG00000092764' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Heart',
(int) 2 => 'Brain'
)
),
'CIL_0000AK_0007' => array(
'genes_in_region' => array(
'ENSDARG00000074001' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Muscle',
(int) 3 => 'Brain',
(int) 4 => 'Brain'
)
),
'CIL_0000AK_000B' => array(
'genes_in_region' => array(
'ENSDARG00000069801' => array(
[maximum depth reached]
),
'ENSDARG00000091148' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Brain',
(int) 3 => 'Heart',
(int) 4 => 'Brain',
(int) 5 => 'Heart'
)
),
'CIL_0000AK_000C' => array(
'genes_in_region' => array(
'ENSDARG00000087301' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Muscle'
)
),
'CIL_0000AK_000F' => array(
'genes_in_region' => array(
'ENSDARG00000018797' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_000J' => array(
'genes_in_region' => array(
'ENSDARG00000069801' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Brain'
)
),
'CIL_0000AK_000R' => array(
'genes_in_region' => array(
'ENSDARG00000087301' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Muscle'
)
),
'CIL_0000AK_000W' => array(
'genes_in_region' => array(
'ENSDARG00000091148' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Brain',
(int) 2 => 'Heart',
(int) 3 => 'Brain',
(int) 4 => 'Heart'
)
),
'CIL_0000AK_000X' => array(
'genes_in_region' => array(
'ENSDARG00000092764' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_0000AK_000Y' => array(
'genes_in_region' => array(
'ENSDARG00000093318' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_000Z' => array(
'genes_in_region' => array(
'ENSG00000118231' => array(
[maximum depth reached]
),
'ENSG00000163254' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Testis'
)
),
'CIL_0000AK_0010' => array(
'genes_in_region' => array(
'ENSG00000163254' => array(
[maximum depth reached]
),
'ENSG00000182187' => array(
[maximum depth reached]
),
'ENSG00000224529' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis'
)
),
'CIL_0000AK_0011' => array(
'genes_in_region' => array(
'ENSG00000168582' => array(
[maximum depth reached]
),
'ENSG00000182187' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Testis'
)
),
'CIL_0000AK_0012' => array(
'genes_in_region' => array(
'ENSMUSG00000025952' => array(
[maximum depth reached]
),
'ENSMUSG00000073658' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Ovary',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Ovary'
)
),
'CIL_0000AK_0013' => array(
'genes_in_region' => array(
'ENSMUSG00000025952' => array(
[maximum depth reached]
),
'ENSMUSG00000067299' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Ovary',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Adrenal',
(int) 8 => 'Ovary',
(int) 9 => 'Adipose',
(int) 10 => 'Testis'
)
),
'CIL_0000AK_0014' => array(
'genes_in_region' => array(
'ENSMUSG00000067299' => array(
[maximum depth reached]
),
'ENSMUSG00000070870' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Ovary',
(int) 2 => 'Adipose',
(int) 3 => 'Testis',
(int) 4 => 'Adrenal',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Brain'
)
),
'CIL_0000AK_0015' => array(
'genes_in_region' => array(
'ENSMUSG00000044429' => array(
[maximum depth reached]
),
'ENSMUSG00000073658' => array(
[maximum depth reached]
),
'ENSMUSG00000100774' => array(
[maximum depth reached]
),
'ENSMUSG00000100846' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Colon',
(int) 2 => 'Lung',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Ovary',
(int) 6 => 'Bladder',
(int) 7 => 'Brain',
(int) 8 => 'Liver',
(int) 9 => 'Ovary',
(int) 10 => 'Breast'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000016421' => 'crystallin, gamma M1',
'ENSDARG00000040738' => 'zgc:153846',
'ENSDARG00000018797' => 'crystallin, gamma MX, like 1',
'ENSDARG00000078876' => 'crystallin, gamma M2b',
'ENSDARG00000040735' => 'crystallin, gamma M6',
'ENSDARG00000093318' => 'si:dkey-57a22.15',
'ENSDARG00000040736' => 'crystallin, gamma M7',
'ENSDARG00000092764' => 'si:dkey-57a22.14',
'ENSDARG00000069831' => 'crystallin, gamma M2c',
'ENSDARG00000044875' => 'crystallin, gamma M2e',
'ENSDARG00000057460' => 'crystallin, gamma M2d13',
'ENSDARG00000053862' => 'crystallin, gamma MX',
'ENSDARG00000074001' => 'crystallin, gamma MX, like 2',
'ENSDARG00000069827' => 'crystallin, gamma M2d11',
'ENSDARG00000057536' => 'crystallin, gamma M2a',
'ENSDARG00000069792' => 'crystallin, gamma M2d5',
'ENSDARG00000073750' => 'crystallin, gamma M2d9',
'ENSDARG00000069801' => 'crystallin, gamma M2d12',
'ENSDARG00000091148' => 'crystallin, gamma M2d20',
'ENSDARG00000069817' => 'crystallin, gamma M2d8',
'ENSDARG00000087301' => 'crystallin, gamma M2d14',
'ENSDARG00000069826' => 'crystallin, gamma M2d15',
'ENSDARG00000086912' => 'crystallin, gamma M2d18',
'ENSDARG00000087164' => 'crystallin, gamma M2d4',
'ENSDARG00000073874' => 'crystallin, gamma M2d6',
'ENSDARG00000076693' => 'crystallin, gamma M2d17',
'ENSDARG00000076572' => 'crystallin, gamma M2d7',
'ENSDARG00000088823' => 'crystallin, gamma M2d3',
'ENSDARG00000076790' => 'crystallin, gamma M2d16',
'ENSDARG00000025943' => 'crystallin, gamma S3',
'ENSDARG00000041179' => 'crystallin, gamma M5',
'ENSDARG00000078134' => 'crystallin, gamma M2f',
'ENSDARG00000086658' => 'crystallin, gamma M2d21',
'ENSDARG00000087765' => 'crystallin, gamma M2d10',
'ENSDARG00000088687' => 'crystallin, gamma M2d17',
'ENSDARG00000086917' => 'crystallin, gamma M2d2',
'ENSDARG00000087324' => 'crystallin, gamma M2d1',
'ENSG00000118231' => 'crystallin, gamma D',
'ENSG00000163254' => 'crystallin, gamma C',
'ENSG00000182187' => 'crystallin, gamma B',
'ENSG00000224529' => null,
'ENSG00000168582' => 'crystallin, gamma A',
'ENSMUSG00000025952' => 'crystallin, gamma C',
'ENSMUSG00000073658' => 'crystallin, gamma B',
'ENSMUSG00000067299' => 'crystallin, gamma D',
'ENSMUSG00000070870' => 'crystallin, gamma E',
'ENSMUSG00000044429' => 'crystallin, gamma A',
'ENSMUSG00000100774' => 'predicted gene 7329',
'ENSMUSG00000100846' => 'predicted gene 28845'
)
$gene_name_arr = array(
'ENSDARG00000016421' => 'crygm1',
'ENSDARG00000040738' => 'zgc:153846',
'ENSDARG00000018797' => 'crygmxl1',
'ENSDARG00000078876' => 'crygm2b',
'ENSDARG00000040735' => 'crygm6',
'ENSDARG00000093318' => 'si:dkey-57a22.15',
'ENSDARG00000040736' => 'crygm7',
'ENSDARG00000092764' => 'si:dkey-57a22.14',
'ENSDARG00000069831' => 'crygm2c',
'ENSDARG00000044875' => 'crygm2e',
'ENSDARG00000057460' => 'crygm2d13',
'ENSDARG00000053862' => 'crygmx',
'ENSDARG00000074001' => 'crygmxl2',
'ENSDARG00000069827' => 'crygm2d11',
'ENSDARG00000057536' => 'crygm2a',
'ENSDARG00000069792' => 'crygm2d5',
'ENSDARG00000073750' => 'crygm2d9',
'ENSDARG00000069801' => 'crygm2d12',
'ENSDARG00000091148' => 'crygm2d20',
'ENSDARG00000069817' => 'crygm2d8',
'ENSDARG00000087301' => 'crygm2d14',
'ENSDARG00000069826' => 'crygm2d15',
'ENSDARG00000086912' => 'crygm2d18',
'ENSDARG00000087164' => 'crygm2d4',
'ENSDARG00000073874' => 'crygm2d6',
'ENSDARG00000076693' => 'crygm2d17',
'ENSDARG00000076572' => 'crygm2d7',
'ENSDARG00000088823' => 'crygm2d3',
'ENSDARG00000076790' => 'crygm2d16',
'ENSDARG00000025943' => 'crygs3',
'ENSDARG00000041179' => 'crygm5',
'ENSDARG00000078134' => 'crygm2f',
'ENSDARG00000086658' => 'crygm2d21',
'ENSDARG00000087765' => 'crygm2d10',
'ENSDARG00000088687' => 'crygm2d17',
'ENSDARG00000086917' => 'crygm2d2',
'ENSDARG00000087324' => 'crygm2d1',
'ENSG00000118231' => 'CRYGD',
'ENSG00000163254' => 'CRYGC',
'ENSG00000182187' => 'CRYGB',
'ENSG00000224529' => 'AC093698.4',
'ENSG00000168582' => 'CRYGA',
'ENSMUSG00000025952' => 'Crygc',
'ENSMUSG00000073658' => 'Crygb',
'ENSMUSG00000067299' => 'Crygd',
'ENSMUSG00000070870' => 'Cryge',
'ENSMUSG00000044429' => 'Cryga',
'ENSMUSG00000100774' => 'RP23-348D4.1',
'ENSMUSG00000100846' => 'RP23-348D4.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0001',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23045257',
'seq_end' => '23051649',
'region_length' => '6392',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000016421-ENSDARG00000040738'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0002',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23089517',
'seq_end' => '23102709',
'region_length' => '13192',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000018797-ENSDARG00000078876'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0003',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23034157',
'seq_end' => '23038178',
'region_length' => '4021',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000040735-ENSDARG00000093318'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0004',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23026437',
'seq_end' => '23030494',
'region_length' => '4057',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000040736-ENSDARG00000092764'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0005',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23050713',
'seq_end' => '23056406',
'region_length' => '5693',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000040738-ENSDARG00000069831'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0006',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23113467',
'seq_end' => '23125670',
'region_length' => '12203',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000044875-ENSDARG00000057460'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0007',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '32525268',
'seq_end' => '32533156',
'region_length' => '7888',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000053862-ENSDARG00000074001'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0008',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23124506',
'seq_end' => '23132881',
'region_length' => '8375',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000057460-ENSDARG00000069827'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0009',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23108873',
'seq_end' => '23114334',
'region_length' => '5461',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000057536-ENSDARG00000044875'
)
),
(int) 9 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000A',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23265223',
'seq_end' => '23273397',
'region_length' => '8174',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000069792-ENSDARG00000073750'
)
),
(int) 10 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000B',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23238022',
'seq_end' => '23246693',
'region_length' => '8671',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000069801-ENSDARG00000091148'
)
),
(int) 11 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000C',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23168076',
'seq_end' => '23180912',
'region_length' => '12836',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000069817-ENSDARG00000087301'
)
),
(int) 12 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000D',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23149945',
'seq_end' => '23155935',
'region_length' => '5990',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000069826-ENSDARG00000086912'
)
),
(int) 13 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000E',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23131920',
'seq_end' => '23150775',
'region_length' => '18855',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000069827-ENSDARG00000069826'
)
),
(int) 14 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000F',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23055450',
'seq_end' => '23091003',
'region_length' => '35553',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000069831-ENSDARG00000018797'
)
),
(int) 15 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000G',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23272358',
'seq_end' => '23278917',
'region_length' => '6559',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000073750-ENSDARG00000087164'
)
),
(int) 16 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000H',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23214761',
'seq_end' => '23221462',
'region_length' => '6701',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000073874-ENSDARG00000076693'
)
),
(int) 17 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000I',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23304401',
'seq_end' => '23315199',
'region_length' => '10798',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000076572-ENSDARG00000088823'
)
),
(int) 18 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000J',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23220376',
'seq_end' => '23239027',
'region_length' => '18651',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000076693-ENSDARG00000069801'
)
),
(int) 19 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000K',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23190627',
'seq_end' => '23215741',
'region_length' => '25114',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000076790-ENSDARG00000073874'
)
),
(int) 20 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000L',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23377940',
'seq_end' => '23385625',
'region_length' => '7685',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000078134-ENSDARG00000041179'
)
),
(int) 21 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000M',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23101757',
'seq_end' => '23109713',
'region_length' => '7956',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000078876-ENSDARG00000057536'
)
),
(int) 22 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000N',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23331591',
'seq_end' => '23344647',
'region_length' => '13056',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000086658-ENSDARG00000087765'
)
),
(int) 23 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000O',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23155098',
'seq_end' => '23163133',
'region_length' => '8035',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000086912-ENSDARG00000088687'
)
),
(int) 24 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000P',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23350824',
'seq_end' => '23372927',
'region_length' => '22103',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000086917-ENSDARG00000087324'
)
),
(int) 25 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000Q',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23277882',
'seq_end' => '23305526',
'region_length' => '27644',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000087164-ENSDARG00000076572'
)
),
(int) 26 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000R',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23179886',
'seq_end' => '23191670',
'region_length' => '11784',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000087301-ENSDARG00000076790'
)
),
(int) 27 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000S',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23371923',
'seq_end' => '23378845',
'region_length' => '6922',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000087324-ENSDARG00000078134'
)
),
(int) 28 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000T',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23343183',
'seq_end' => '23351856',
'region_length' => '8673',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000087765-ENSDARG00000086917'
)
),
(int) 29 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000U',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23161847',
'seq_end' => '23168921',
'region_length' => '7074',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000088687-ENSDARG00000069817'
)
),
(int) 30 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000V',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23313816',
'seq_end' => '23332757',
'region_length' => '18941',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000088823-ENSDARG00000086658'
)
),
(int) 31 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000W',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23245586',
'seq_end' => '23266247',
'region_length' => '20661',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000091148-ENSDARG00000069792'
)
),
(int) 32 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000X',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23029806',
'seq_end' => '23035123',
'region_length' => '5317',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000092764-ENSDARG00000040735'
)
),
(int) 33 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000Y',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23037287',
'seq_end' => '23046164',
'region_length' => '8877',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000093318-ENSDARG00000016421'
)
),
(int) 34 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000Z',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '208121607',
'seq_end' => '208129830',
'region_length' => '8223',
'region_type' => 'CGP',
'el_id' => 'ENSG00000118231-ENSG00000163254'
)
),
(int) 35 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0010',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '208128137',
'seq_end' => '208146168',
'region_length' => '18031',
'region_type' => 'CGP',
'el_id' => 'ENSG00000163254-ENSG00000182187'
)
),
(int) 36 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0011',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '208142573',
'seq_end' => '208163576',
'region_length' => '21003',
'region_type' => 'CGP',
'el_id' => 'ENSG00000182187-ENSG00000168582'
)
),
(int) 37 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0012',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '65071525',
'seq_end' => '65082288',
'region_length' => '10763',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000025952-ENSMUSG00000073658'
)
),
(int) 38 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0013',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '65061872',
'seq_end' => '65073689',
'region_length' => '11817',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000067299-ENSMUSG00000025952'
)
),
(int) 39 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0014',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '65048554',
'seq_end' => '65063452',
'region_length' => '14898',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000070870-ENSMUSG00000067299'
)
),
(int) 40 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_0015',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '65080219',
'seq_end' => '65103373',
'region_length' => '23154',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000073658-ENSMUSG00000044429'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 6 => 'Bladder',
(int) 7 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 55 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 70 => 'Ovary',
(int) 81 => 'Placenta',
(int) 85 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 133
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000101897' => array(
'start' => '23045257',
'end' => '23046164',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm1-001'
),
'ENSDART00000023059' => array(
'start' => '23050713',
'end' => '23051649',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zgc:153846-001'
),
'ENSDART00000101944' => array(
'start' => '23089517',
'end' => '23091003',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmxl1-001'
),
'ENSDART00000101938' => array(
'start' => '23101757',
'end' => '23102709',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2b-001'
),
'ENSDART00000040744' => array(
'start' => '23034157',
'end' => '23035123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm6-001'
),
'ENSDART00000091013' => array(
'start' => '23037287',
'end' => '23038178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-57a22.15-001'
),
'ENSDART00000059693' => array(
'start' => '23026437',
'end' => '23027402',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm7-001'
),
'ENSDART00000139189' => array(
'start' => '23026473',
'end' => '23027260',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'crygm7-002'
),
'ENSDART00000145297' => array(
'start' => '23026533',
'end' => '23027236',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm7-003'
),
'ENSDART00000132201' => array(
'start' => '23029806',
'end' => '23030494',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-57a22.14-001'
),
'ENSDART00000101952' => array(
'start' => '23055450',
'end' => '23056406',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2c-001'
),
'ENSDART00000065956' => array(
'start' => '23113467',
'end' => '23114199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2e-201'
),
'ENSDART00000136014' => array(
'start' => '23113583',
'end' => '23114334',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2e-001'
),
'ENSDART00000101928' => array(
'start' => '23124506',
'end' => '23125434',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d13-001'
),
'ENSDART00000123413' => array(
'start' => '23124508',
'end' => '23125670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d13-201'
),
'ENSDART00000105594' => array(
'start' => '32525268',
'end' => '32528780',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmx-001'
),
'ENSDART00000105596' => array(
'start' => '32525271',
'end' => '32528754',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmx-201'
),
'ENSDART00000075983' => array(
'start' => '32529778',
'end' => '32533156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmxl2-001'
),
'ENSDART00000133829' => array(
'start' => '32530171',
'end' => '32533104',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygmxl2-002'
),
'ENSDART00000146367' => array(
'start' => '32529926',
'end' => '32531405',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygmxl2-003'
),
'ENSDART00000101923' => array(
'start' => '23131920',
'end' => '23132881',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d11-001'
),
'ENSDART00000135853' => array(
'start' => '23132032',
'end' => '23132836',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d11-002'
),
'ENSDART00000128486' => array(
'start' => '23108873',
'end' => '23109713',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2a-001'
),
'ENSDART00000101845' => array(
'start' => '23265223',
'end' => '23266247',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d5-001'
),
'ENSDART00000146460' => array(
'start' => '23265318',
'end' => '23266136',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d5-002'
),
'ENSDART00000111109' => array(
'start' => '23272358',
'end' => '23273397',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d9-001'
),
'ENSDART00000133093' => array(
'start' => '23272463',
'end' => '23273284',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d9-002'
),
'ENSDART00000101869' => array(
'start' => '23238022',
'end' => '23239027',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d12-001'
),
'ENSDART00000110656' => array(
'start' => '23245586',
'end' => '23246642',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d20-001'
),
'ENSDART00000133149' => array(
'start' => '23246063',
'end' => '23246693',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d20-002'
),
'ENSDART00000101902' => array(
'start' => '23168076',
'end' => '23168921',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d8-001'
),
'ENSDART00000110941' => array(
'start' => '23179886',
'end' => '23180912',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d14-001'
),
'ENSDART00000101916' => array(
'start' => '23149945',
'end' => '23150775',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d15-001'
),
'ENSDART00000108748' => array(
'start' => '23155098',
'end' => '23155935',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d18-001'
),
'ENSDART00000114943' => array(
'start' => '23277882',
'end' => '23278917',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d4-001'
),
'ENSDART00000101809' => array(
'start' => '23214761',
'end' => '23215741',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d6-001'
),
'ENSDART00000110933' => array(
'start' => '23220576',
'end' => '23221349',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d17-002'
),
'ENSDART00000132890' => array(
'start' => '23220376',
'end' => '23221462',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d17-001'
),
'ENSDART00000113174' => array(
'start' => '23304401',
'end' => '23305526',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d7-001'
),
'ENSDART00000135190' => array(
'start' => '23304624',
'end' => '23305408',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d7-002'
),
'ENSDART00000123763' => array(
'start' => '23314029',
'end' => '23314845',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d3-002'
),
'ENSDART00000146319' => array(
'start' => '23313816',
'end' => '23315199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d3-001'
),
'ENSDART00000114568' => array(
'start' => '23190627',
'end' => '23191670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d16-001'
),
'ENSDART00000146188' => array(
'start' => '23190813',
'end' => '23191628',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d16-002'
),
'ENSDART00000046116' => array(
'start' => '23398400',
'end' => '23399587',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygs3-001'
),
'ENSDART00000080054' => array(
'start' => '23384806',
'end' => '23399585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygs3-201'
),
'ENSDART00000060361' => array(
'start' => '23384282',
'end' => '23385625',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm5-001'
),
'ENSDART00000115384' => array(
'start' => '23378392',
'end' => '23385625',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm5-002'
),
'ENSDART00000101802' => array(
'start' => '23377940',
'end' => '23378845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2f-001'
),
'ENSDART00000124600' => array(
'start' => '23331820',
'end' => '23332643',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d21-002'
),
'ENSDART00000139101' => array(
'start' => '23331591',
'end' => '23332757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d21-001'
),
'ENSDART00000108719' => array(
'start' => '23343183',
'end' => '23344264',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d10-001'
),
'ENSDART00000125856' => array(
'start' => '23343326',
'end' => '23344647',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d10-201'
),
'ENSDART00000147358' => array(
'start' => '23343362',
'end' => '23344151',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d10-002'
),
'ENSDART00000124272' => array(
'start' => '23161847',
'end' => '23163133',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d17-001'
),
'ENSDART00000101810' => array(
'start' => '23350981',
'end' => '23351723',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d2-201'
),
'ENSDART00000129295' => array(
'start' => '23350824',
'end' => '23351856',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d2-001'
),
'ENSDART00000132029' => array(
'start' => '23350950',
'end' => '23351816',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'crygm2d2-002'
),
'ENSDART00000134805' => array(
'start' => '23371923',
'end' => '23372927',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'crygm2d1-001'
),
'ENST00000264376' => array(
'start' => '208121607',
'end' => '208124501',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGD-001'
),
'ENST00000282141' => array(
'start' => '208128137',
'end' => '208129830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGC-001'
),
'ENST00000260988' => array(
'start' => '208142573',
'end' => '208146168',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGB-001'
),
'ENST00000415505' => array(
'start' => '208135394',
'end' => '208137697',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC093698.4-001'
),
'ENST00000304502' => array(
'start' => '208160740',
'end' => '208163576',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CRYGA-001'
),
'ENSMUST00000027089' => array(
'start' => '65071525',
'end' => '65073689',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygc-001'
),
'ENSMUST00000114064' => array(
'start' => '65071531',
'end' => '65073521',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygc-002'
),
'ENSMUST00000027090' => array(
'start' => '65080219',
'end' => '65082288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygb-001'
),
'ENSMUST00000045028' => array(
'start' => '65061872',
'end' => '65063452',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygd-001'
),
'ENSMUST00000127762' => array(
'start' => '65062731',
'end' => '65063452',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Crygd-002'
),
'ENSMUST00000146122' => array(
'start' => '65062345',
'end' => '65063301',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Crygd-003'
),
'ENSMUST00000087359' => array(
'start' => '65048554',
'end' => '65051149',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cryge-001'
),
'ENSMUST00000161960' => array(
'start' => '65048557',
'end' => '65051119',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cryge-002'
),
'ENSMUST00000061497' => array(
'start' => '65100389',
'end' => '65103373',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cryga-001'
),
'ENSMUST00000154012' => array(
'start' => '65100389',
'end' => '65103360',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cryga-002'
),
'ENSMUST00000185915' => array(
'start' => '65095227',
'end' => '65095436',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-348D4.1-001'
),
'ENSMUST00000144760' => array(
'start' => '65100619',
'end' => '65119558',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RP23-348D4.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0000AK_0002' => array(
'genes_in_region' => array(
'ENSDARG00000018797' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_0003' => array(
'genes_in_region' => array(
'ENSDARG00000093318' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_0004' => array(
'genes_in_region' => array(
'ENSDARG00000092764' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Heart',
(int) 2 => 'Brain'
)
),
'CIL_0000AK_0007' => array(
'genes_in_region' => array(
'ENSDARG00000074001' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Muscle',
(int) 3 => 'Brain',
(int) 4 => 'Brain'
)
),
'CIL_0000AK_000B' => array(
'genes_in_region' => array(
'ENSDARG00000069801' => array(
[maximum depth reached]
),
'ENSDARG00000091148' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Brain',
(int) 3 => 'Heart',
(int) 4 => 'Brain',
(int) 5 => 'Heart'
)
),
'CIL_0000AK_000C' => array(
'genes_in_region' => array(
'ENSDARG00000087301' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Muscle'
)
),
'CIL_0000AK_000F' => array(
'genes_in_region' => array(
'ENSDARG00000018797' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_000J' => array(
'genes_in_region' => array(
'ENSDARG00000069801' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Brain'
)
),
'CIL_0000AK_000R' => array(
'genes_in_region' => array(
'ENSDARG00000087301' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Muscle'
)
),
'CIL_0000AK_000W' => array(
'genes_in_region' => array(
'ENSDARG00000091148' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Brain',
(int) 2 => 'Heart',
(int) 3 => 'Brain',
(int) 4 => 'Heart'
)
),
'CIL_0000AK_000X' => array(
'genes_in_region' => array(
'ENSDARG00000092764' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_0000AK_000Y' => array(
'genes_in_region' => array(
'ENSDARG00000093318' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney'
)
),
'CIL_0000AK_000Z' => array(
'genes_in_region' => array(
'ENSG00000118231' => array(
[maximum depth reached]
),
'ENSG00000163254' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Testis'
)
),
'CIL_0000AK_0010' => array(
'genes_in_region' => array(
'ENSG00000163254' => array(
[maximum depth reached]
),
'ENSG00000182187' => array(
[maximum depth reached]
),
'ENSG00000224529' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis'
)
),
'CIL_0000AK_0011' => array(
'genes_in_region' => array(
'ENSG00000168582' => array(
[maximum depth reached]
),
'ENSG00000182187' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Testis'
)
),
'CIL_0000AK_0012' => array(
'genes_in_region' => array(
'ENSMUSG00000025952' => array(
[maximum depth reached]
),
'ENSMUSG00000073658' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Ovary',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Ovary'
)
),
'CIL_0000AK_0013' => array(
'genes_in_region' => array(
'ENSMUSG00000025952' => array(
[maximum depth reached]
),
'ENSMUSG00000067299' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Ovary',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Adrenal',
(int) 8 => 'Ovary',
(int) 9 => 'Adipose',
(int) 10 => 'Testis'
)
),
'CIL_0000AK_0014' => array(
'genes_in_region' => array(
'ENSMUSG00000067299' => array(
[maximum depth reached]
),
'ENSMUSG00000070870' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Ovary',
(int) 2 => 'Adipose',
(int) 3 => 'Testis',
(int) 4 => 'Adrenal',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Brain'
)
),
'CIL_0000AK_0015' => array(
'genes_in_region' => array(
'ENSMUSG00000044429' => array(
[maximum depth reached]
),
'ENSMUSG00000073658' => array(
[maximum depth reached]
),
'ENSMUSG00000100774' => array(
[maximum depth reached]
),
'ENSMUSG00000100846' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Colon',
(int) 2 => 'Lung',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Ovary',
(int) 6 => 'Bladder',
(int) 7 => 'Brain',
(int) 8 => 'Liver',
(int) 9 => 'Ovary',
(int) 10 => 'Breast'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0000AK_000I',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '23304401',
'seq_end' => '23315199',
'region_length' => '10798',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000076572-ENSDARG00000088823'
)
)
$gene_el = array(
'ENSDART00000101944' => array(
'Brain' => array(
'average_FPKM' => '0.098',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '2.739',
'stddev_FPKM' => '1.64'
)
)
)
$gene_key = 'ENSDARG00000018797'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.098',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '2.739',
'stddev_FPKM' => '1.64'
)
)
$tran_key = 'ENSDART00000101944'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(crygmxl1)