C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000FR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125834-ENSG00000125780 CGP 9606 20:2101611-2341078
GeneTranscriptPositionBiotype
ENSG00000125780 (TGM3)
transglutaminase 3 		ENST00000381458 (TGM3-001) 2296001-2341078 protein_coding
ENST00000463090 (TGM3-002) 2312978-2326003 processed_transcript
ENSG00000125834 (STK35)
serine/threonine kinase 35 		ENST00000381482 (STK35-001) 2101611-2148555 protein_coding
ENST00000493263 (STK35-003) 2102891-2177038 nonsense_mediated_decay
ENSG00000226644 (RP11-128M1.1)
 ENST00000411839 (RP11-128M1.1-002) 2207227-2213151 lincRNA
ENST00000447956 (RP11-128M1.1-001) 2207217-2213151 lincRNA
CIL_0000FR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037885-ENSMUSG00000027401 CGP 10090 2:129800517-130050399
GeneTranscriptPositionBiotype
ENSMUSG00000027401 (Tgm3)
transglutaminase 3, E polypeptide 		ENSMUST00000110299 (Tgm3-001) 130012349-130050399 protein_coding
ENSMUSG00000037885 (Stk35)
serine/threonine kinase 35 		ENSMUST00000165413 (Stk35-001) 129800517-129828974 protein_coding
ENSMUST00000166282 (Stk35-002) 129800517-129832287 protein_coding
ENSMUSG00000100255 (RP23-263L18.2)
predicted gene 28196 		ENSMUST00000187719 (RP23-263L18.2-001) 129948568-129949207 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000FR_0001ENSG00000125780ENST00000381458ENST00000463090ENSG00000125834ENST00000381482ENST00000493263ENSG00000226644ENST00000411839ENST00000447956CIL_0000FR_0002ENSMUSG00000027401ENSMUST00000110299ENSMUSG00000037885ENSMUST00000165413ENSMUST00000166282ENSMUSG00000100255ENSMUST00000187719
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000FR_0001ENSG00000125780ENST00000381458ENST00000463090ENSG00000125834ENST00000381482ENST00000493263ENSG00000226644ENST00000411839ENST00000447956CIL_0000FR_0002ENSMUSG00000027401ENSMUST00000110299ENSMUSG00000037885ENSMUST00000165413ENSMUST00000166282ENSMUSG00000100255ENSMUST00000187719
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125780 ENST00000381458 0.207±0.00 0.008±0.00 0.021±0.00 0.080±0.00 0.018±0.00 0.129±0.09 0.007±0.00 0.034±0.00 0.095±0.00 0.213±0.00 0.007±0.00 11.176±14.88 0.045±0.00 2.102±0.43
ENST00000463090 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.686±0.00 N/A N/A N/A N/A
ENSG00000125834 ENST00000381482 4.691±0.00 6.398±0.00 0.883±0.00 5.408±2.87 5.301±3.02 3.310±1.60 1.989±1.45 2.879±1.10 2.076±1.11 2.426±1.53 1.292±0.39 6.120±3.49 2.441±1.40 15.980±2.12
ENST00000493263 N/A N/A N/A N/A 1.291±0.00 0.878±0.00 N/A 1.274±0.00 1.257±0.00 1.721±0.00 N/A N/A N/A N/A
ENSG00000226644 ENST00000411839 N/A 0.528±0.00 N/A 0.168±0.00 0.232±0.00 N/A N/A N/A N/A 2.410±0.00 N/A 2.126±1.72 0.382±0.00 1.994±0.56
ENST00000447956 N/A N/A N/A 0.140±0.00 N/A N/A N/A 0.193±0.00 0.057±0.00 N/A N/A 0.449±0.00 N/A 0.610±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027401 ENSMUST00000110299 0.041±0.02 0.796±0.31 0.587±0.00 0.381±0.28 0.074±0.05 233.470±24.23 0.030±0.01 0.031±0.02 0.037±0.04 19.651±19.54 0.027±0.02 0.118±0.05 0.025±0.01 0.474±0.18
ENSMUSG00000037885 ENSMUST00000165413 N/A N/A N/A 1.971±0.00 N/A N/A N/A N/A 1.929±0.00 N/A 0.853±0.00 N/A 1.346±0.50 34.715±11.99
ENSMUST00000166282 4.327±0.63 8.613±3.44 7.421±0.11 6.033±0.68 5.552±0.90 9.147±1.42 2.136±0.64 4.443±0.89 2.571±0.90 6.941±0.93 0.417±0.15 12.200±3.71 2.416±1.59 17.971±0.92
ENSMUSG00000100255 ENSMUST00000187719 N/A N/A 0.039±0.03 0.420±0.54 N/A N/A N/A 0.143±0.00 0.024±0.00 N/A 0.045±0.01 0.683±0.79 0.175±0.14 2.145±0.00

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