C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000VY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167700-ENSG00000160957 CGP 9606 8:144509074-144517845
GeneTranscriptPositionBiotype
ENSG00000160957 (RECQL4)
RecQ protein-like 4 		ENST00000301323 (RECQL4-013) 144511294-144512713 nonsense_mediated_decay
ENST00000524998 (RECQL4-005) 144515858-144517499 protein_coding
ENST00000529424 (RECQL4-009) 144511390-144512373 processed_transcript
ENST00000531875 (RECQL4-011) 144511325-144512772 protein_coding
ENST00000532846 (RECQL4-007) 144513571-144516003 protein_coding
ENST00000534270 (RECQL4-003) 144516833-144517572 retained_intron
ENST00000534538 (RECQL4-004) 144516245-144517628 nonsense_mediated_decay
ENST00000534626 (RECQL4-008) 144512453-144514514 protein_coding
ENST00000617875 (RECQL4-002) 144511291-144517826 protein_coding
ENST00000621189 (RECQL4-001) 144511288-144517845 protein_coding
ENSG00000167700 (MFSD3)
major facilitator superfamily domain containing 3 		ENST00000301327 (MFSD3-001) 144509074-144511213 protein_coding
ENST00000526749 (MFSD3-003) 144509619-144510814 retained_intron
ENST00000528047 (MFSD3-002) 144509080-144511181 retained_intron
ENST00000534427 (MFSD3-004) 144510246-144511181 retained_intron
ENSG00000265393 (CTD-2517M22.17)
 ENST00000580385 (CTD-2517M22.17-001) 144512567-144513672 antisense
CIL_0000VY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000019080-ENSMUSG00000033762 CGP 10090 15:76701542-76710559
GeneTranscriptPositionBiotype
ENSMUSG00000019080 (Mfsd3)
major facilitator superfamily domain containing 3 		ENSMUST00000019224 (Mfsd3-201) 76701542-76704239 protein_coding
ENSMUSG00000033762 (Recql4)
RecQ protein-like 4 		ENSMUST00000036852 (Recql4-201) 76703553-76710559 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000VY_0001ENSG00000160957ENST00000301323ENST00000524998ENST00000529424ENST00000531875ENST00000532846ENST00000534270ENST00000534538ENST00000534626ENST00000617875ENST00000621189ENSG00000167700ENST00000301327ENST00000526749ENST00000528047ENST00000534427ENSG00000265393ENST00000580385CIL_0000VY_0002ENSMUSG00000019080ENSMUST00000019224ENSMUSG00000033762ENSMUST00000036852
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000VY_0001ENSG00000160957ENST00000301323ENST00000524998ENST00000531875ENST00000532846ENST00000534538ENST00000534626ENST00000617875ENST00000621189ENSG00000167700ENST00000301327ENST00000528047ENSG00000265393ENST00000580385CIL_0000VY_0002ENSMUSG00000019080ENSMUST00000019224ENSMUSG00000033762ENSMUST00000036852
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000160957 ENST00000301323 0.555±0.00 N/A N/A N/A 1.325±0.00 N/A N/A 1.112±0.90 N/A N/A N/A 2.621±1.61 N/A 5.402±0.00
ENST00000524998 N/A N/A N/A N/A N/A N/A 0.436±0.00 N/A N/A N/A 0.369±0.00 N/A N/A N/A
ENST00000529424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531875 N/A 0.786±0.00 N/A 0.501±0.00 0.697±0.00 N/A N/A N/A 0.484±0.00 N/A N/A N/A N/A N/A
ENST00000532846 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.149±0.00 N/A 1.429±0.00 N/A N/A
ENST00000534270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534538 N/A N/A 0.269±0.00 N/A N/A N/A N/A N/A 0.779±0.00 N/A 0.375±0.00 N/A N/A N/A
ENST00000534626 N/A N/A N/A 0.426±0.00 N/A 0.624±0.00 0.374±0.00 N/A 0.171±0.00 N/A N/A 7.096±0.00 1.641±0.00 11.585±0.00
ENST00000617875 N/A N/A N/A 0.457±0.00 N/A N/A 0.274±0.00 0.772±0.00 0.267±0.00 N/A N/A 2.467±1.29 N/A 2.181±0.00
ENST00000621189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.962±0.00 0.665±0.00 1.331±0.00
ENSG00000167700 ENST00000301327 3.288±0.00 4.218±0.00 0.552±0.00 7.126±0.00 5.987±5.47 2.562±0.00 6.363±0.00 8.550±7.15 8.768±0.00 1.244±0.99 2.481±1.25 8.343±2.91 8.470±1.95 4.750±0.29
ENST00000526749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528047 N/A N/A N/A 0.457±0.00 N/A N/A N/A N/A N/A 1.412±0.00 0.891±0.00 0.329±0.00 N/A 1.479±0.32
ENST00000534427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000265393 ENST00000580385 N/A N/A 0.251±0.00 1.875±0.57 N/A N/A N/A N/A 0.838±0.00 N/A N/A 2.698±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019080 ENSMUST00000019224 5.795±0.80 20.050±4.30 3.616±0.69 2.007±1.29 8.060±3.41 4.366±1.30 3.265±0.66 4.950±1.43 6.359±2.66 3.945±0.39 2.968±1.06 7.071±3.60 1.558±0.16 2.236±0.07
ENSMUSG00000033762 ENSMUST00000036852 1.475±0.41 N/A 0.632±0.12 2.026±1.68 1.327±0.35 1.472±0.59 0.319±0.03 0.415±0.00 6.592±6.89 0.669±0.04 0.175±0.00 2.200±0.75 1.382±0.85 4.812±2.08

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