| Source ID |
Type |
Tax ID |
Position |
| ENSG00000198003-ENSG00000130175 |
CGP |
9606 |
19:11420604-11450968  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_00016V_0001 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_00016V_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000130175' => 'protein kinase C substrate 80K-H',
'ENSG00000198003' => 'coiled-coil domain containing 151',
'ENSMUSG00000003402' => 'protein kinase C substrate 80K-H',
'ENSMUSG00000039632' => 'coiled-coil domain containing 151'
),
'gene_name_arr' => array(
'ENSG00000130175' => 'PRKCSH',
'ENSG00000198003' => 'CCDC151',
'ENSMUSG00000003402' => 'Prkcsh',
'ENSMUSG00000039632' => 'Ccdc151'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 6 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 16 => 'Brain',
(int) 23 => 'Breast',
(int) 30 => 'Colon',
(int) 38 => 'Heart',
(int) 44 => 'Kidney',
(int) 52 => 'Liver',
(int) 60 => 'Lung',
(int) 68 => 'Muscle',
(int) 79 => 'Ovary',
(int) 86 => 'Placenta',
(int) 94 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 29,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000585325' => array(
'start' => '11446316',
'end' => '11448018',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-012'
),
'ENST00000585540' => array(
'start' => '11447121',
'end' => '11448405',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-020'
),
'ENST00000586486' => array(
'start' => '11447565',
'end' => '11450968',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PRKCSH-006'
),
'ENST00000587290' => array(
'start' => '11447934',
'end' => '11449422',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-013'
),
'ENST00000587327' => array(
'start' => '11435745',
'end' => '11450867',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-005'
),
'ENST00000587509' => array(
'start' => '11435627',
'end' => '11441311',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-017'
),
'ENST00000588269' => array(
'start' => '11435624',
'end' => '11437884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-007'
),
'ENST00000589126' => array(
'start' => '11435619',
'end' => '11442422',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-016'
),
'ENST00000589838' => array(
'start' => '11436118',
'end' => '11450940',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-001'
),
'ENST00000589990' => array(
'start' => '11442407',
'end' => '11445846',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-019'
),
'ENST00000590098' => array(
'start' => '11447998',
'end' => '11449163',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-014'
),
'ENST00000591462' => array(
'start' => '11435288',
'end' => '11450965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-002'
),
'ENST00000591510' => array(
'start' => '11449779',
'end' => '11450967',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRKCSH-021'
),
'ENST00000591946' => array(
'start' => '11435401',
'end' => '11436495',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-010'
),
'ENST00000592435' => array(
'start' => '11448537',
'end' => '11449268',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-015'
),
'ENST00000592445' => array(
'start' => '11447065',
'end' => '11447940',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-011'
),
'ENST00000592741' => array(
'start' => '11435635',
'end' => '11450968',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-003'
),
'ENST00000593053' => array(
'start' => '11435632',
'end' => '11441252',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRKCSH-009'
),
'ENST00000593101' => array(
'start' => '11435740',
'end' => '11441321',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-018'
),
'ENST00000593104' => array(
'start' => '11435630',
'end' => '11441105',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRKCSH-008'
),
'ENST00000356392' => array(
'start' => '11420604',
'end' => '11435104',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC151-001'
),
'ENST00000586836' => array(
'start' => '11420605',
'end' => '11435782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC151-005'
),
'ENST00000591179' => array(
'start' => '11420605',
'end' => '11435121',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC151-003'
),
'ENST00000591345' => array(
'start' => '11420604',
'end' => '11435178',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CCDC151-004'
),
'ENST00000593281' => array(
'start' => '11430559',
'end' => '11434899',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CCDC151-006'
),
'ENSMUST00000003493' => array(
'start' => '22003035',
'end' => '22014219',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prkcsh-201'
),
'ENSMUST00000115331' => array(
'start' => '22003035',
'end' => '22014219',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prkcsh-202'
),
'ENSMUST00000044926' => array(
'start' => '21989871',
'end' => '22002634',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc151-201'
),
'ENSMUST00000115336' => array(
'start' => '21989871',
'end' => '22002634',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc151-202'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_00016V_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_00016V_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000003402' => array(
[maximum depth reached]
),
'ENSMUSG00000039632' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Lung',
(int) 37 => 'Muscle',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adipose',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000130175' => 'protein kinase C substrate 80K-H',
'ENSG00000198003' => 'coiled-coil domain containing 151',
'ENSMUSG00000003402' => 'protein kinase C substrate 80K-H',
'ENSMUSG00000039632' => 'coiled-coil domain containing 151'
)
$gene_name_arr = array(
'ENSG00000130175' => 'PRKCSH',
'ENSG00000198003' => 'CCDC151',
'ENSMUSG00000003402' => 'Prkcsh',
'ENSMUSG00000039632' => 'Ccdc151'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00016V_0001',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '11420604',
'seq_end' => '11450968',
'region_length' => '30364',
'region_type' => 'CGP',
'el_id' => 'ENSG00000198003-ENSG00000130175'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00016V_0002',
'tax_id' => '10090',
'chromosome' => '9',
'seq_start' => '21989871',
'seq_end' => '22014219',
'region_length' => '24348',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000039632-ENSMUSG00000003402'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 6 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 16 => 'Brain',
(int) 23 => 'Breast',
(int) 30 => 'Colon',
(int) 38 => 'Heart',
(int) 44 => 'Kidney',
(int) 52 => 'Liver',
(int) 60 => 'Lung',
(int) 68 => 'Muscle',
(int) 79 => 'Ovary',
(int) 86 => 'Placenta',
(int) 94 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 29
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000585325' => array(
'start' => '11446316',
'end' => '11448018',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-012'
),
'ENST00000585540' => array(
'start' => '11447121',
'end' => '11448405',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-020'
),
'ENST00000586486' => array(
'start' => '11447565',
'end' => '11450968',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PRKCSH-006'
),
'ENST00000587290' => array(
'start' => '11447934',
'end' => '11449422',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-013'
),
'ENST00000587327' => array(
'start' => '11435745',
'end' => '11450867',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-005'
),
'ENST00000587509' => array(
'start' => '11435627',
'end' => '11441311',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-017'
),
'ENST00000588269' => array(
'start' => '11435624',
'end' => '11437884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-007'
),
'ENST00000589126' => array(
'start' => '11435619',
'end' => '11442422',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-016'
),
'ENST00000589838' => array(
'start' => '11436118',
'end' => '11450940',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-001'
),
'ENST00000589990' => array(
'start' => '11442407',
'end' => '11445846',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-019'
),
'ENST00000590098' => array(
'start' => '11447998',
'end' => '11449163',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-014'
),
'ENST00000591462' => array(
'start' => '11435288',
'end' => '11450965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-002'
),
'ENST00000591510' => array(
'start' => '11449779',
'end' => '11450967',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRKCSH-021'
),
'ENST00000591946' => array(
'start' => '11435401',
'end' => '11436495',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-010'
),
'ENST00000592435' => array(
'start' => '11448537',
'end' => '11449268',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-015'
),
'ENST00000592445' => array(
'start' => '11447065',
'end' => '11447940',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-011'
),
'ENST00000592741' => array(
'start' => '11435635',
'end' => '11450968',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-003'
),
'ENST00000593053' => array(
'start' => '11435632',
'end' => '11441252',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRKCSH-009'
),
'ENST00000593101' => array(
'start' => '11435740',
'end' => '11441321',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-018'
),
'ENST00000593104' => array(
'start' => '11435630',
'end' => '11441105',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRKCSH-008'
),
'ENST00000356392' => array(
'start' => '11420604',
'end' => '11435104',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC151-001'
),
'ENST00000586836' => array(
'start' => '11420605',
'end' => '11435782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC151-005'
),
'ENST00000591179' => array(
'start' => '11420605',
'end' => '11435121',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC151-003'
),
'ENST00000591345' => array(
'start' => '11420604',
'end' => '11435178',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CCDC151-004'
),
'ENST00000593281' => array(
'start' => '11430559',
'end' => '11434899',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CCDC151-006'
),
'ENSMUST00000003493' => array(
'start' => '22003035',
'end' => '22014219',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prkcsh-201'
),
'ENSMUST00000115331' => array(
'start' => '22003035',
'end' => '22014219',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prkcsh-202'
),
'ENSMUST00000044926' => array(
'start' => '21989871',
'end' => '22002634',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc151-201'
),
'ENSMUST00000115336' => array(
'start' => '21989871',
'end' => '22002634',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc151-202'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_00016V_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000003402' => array(
[maximum depth reached]
),
'ENSMUSG00000039632' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Lung',
(int) 37 => 'Muscle',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adipose',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_00016V_0001',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '11420604',
'seq_end' => '11450968',
'region_length' => '30364',
'region_type' => 'CGP',
'el_id' => 'ENSG00000198003-ENSG00000130175'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_00016V_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000130175' => 'protein kinase C substrate 80K-H',
'ENSG00000198003' => 'coiled-coil domain containing 151',
'ENSMUSG00000003402' => 'protein kinase C substrate 80K-H',
'ENSMUSG00000039632' => 'coiled-coil domain containing 151'
),
'gene_name_arr' => array(
'ENSG00000130175' => 'PRKCSH',
'ENSG00000198003' => 'CCDC151',
'ENSMUSG00000003402' => 'Prkcsh',
'ENSMUSG00000039632' => 'Ccdc151'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 6 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 16 => 'Brain',
(int) 23 => 'Breast',
(int) 30 => 'Colon',
(int) 38 => 'Heart',
(int) 44 => 'Kidney',
(int) 52 => 'Liver',
(int) 60 => 'Lung',
(int) 68 => 'Muscle',
(int) 79 => 'Ovary',
(int) 86 => 'Placenta',
(int) 94 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 29,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000585325' => array(
'start' => '11446316',
'end' => '11448018',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-012'
),
'ENST00000585540' => array(
'start' => '11447121',
'end' => '11448405',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-020'
),
'ENST00000586486' => array(
'start' => '11447565',
'end' => '11450968',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PRKCSH-006'
),
'ENST00000587290' => array(
'start' => '11447934',
'end' => '11449422',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-013'
),
'ENST00000587327' => array(
'start' => '11435745',
'end' => '11450867',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-005'
),
'ENST00000587509' => array(
'start' => '11435627',
'end' => '11441311',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-017'
),
'ENST00000588269' => array(
'start' => '11435624',
'end' => '11437884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-007'
),
'ENST00000589126' => array(
'start' => '11435619',
'end' => '11442422',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-016'
),
'ENST00000589838' => array(
'start' => '11436118',
'end' => '11450940',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-001'
),
'ENST00000589990' => array(
'start' => '11442407',
'end' => '11445846',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-019'
),
'ENST00000590098' => array(
'start' => '11447998',
'end' => '11449163',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-014'
),
'ENST00000591462' => array(
'start' => '11435288',
'end' => '11450965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-002'
),
'ENST00000591510' => array(
'start' => '11449779',
'end' => '11450967',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRKCSH-021'
),
'ENST00000591946' => array(
'start' => '11435401',
'end' => '11436495',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-010'
),
'ENST00000592435' => array(
'start' => '11448537',
'end' => '11449268',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-015'
),
'ENST00000592445' => array(
'start' => '11447065',
'end' => '11447940',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-011'
),
'ENST00000592741' => array(
'start' => '11435635',
'end' => '11450968',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-003'
),
'ENST00000593053' => array(
'start' => '11435632',
'end' => '11441252',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRKCSH-009'
),
'ENST00000593101' => array(
'start' => '11435740',
'end' => '11441321',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-018'
),
'ENST00000593104' => array(
'start' => '11435630',
'end' => '11441105',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRKCSH-008'
),
'ENST00000356392' => array(
'start' => '11420604',
'end' => '11435104',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC151-001'
),
'ENST00000586836' => array(
'start' => '11420605',
'end' => '11435782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC151-005'
),
'ENST00000591179' => array(
'start' => '11420605',
'end' => '11435121',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC151-003'
),
'ENST00000591345' => array(
'start' => '11420604',
'end' => '11435178',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CCDC151-004'
),
'ENST00000593281' => array(
'start' => '11430559',
'end' => '11434899',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CCDC151-006'
),
'ENSMUST00000003493' => array(
'start' => '22003035',
'end' => '22014219',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prkcsh-201'
),
'ENSMUST00000115331' => array(
'start' => '22003035',
'end' => '22014219',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prkcsh-202'
),
'ENSMUST00000044926' => array(
'start' => '21989871',
'end' => '22002634',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc151-201'
),
'ENSMUST00000115336' => array(
'start' => '21989871',
'end' => '22002634',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc151-202'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_00016V_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_00016V_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000003402' => array(
[maximum depth reached]
),
'ENSMUSG00000039632' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Lung',
(int) 37 => 'Muscle',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adipose',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000130175' => 'protein kinase C substrate 80K-H',
'ENSG00000198003' => 'coiled-coil domain containing 151',
'ENSMUSG00000003402' => 'protein kinase C substrate 80K-H',
'ENSMUSG00000039632' => 'coiled-coil domain containing 151'
)
$gene_name_arr = array(
'ENSG00000130175' => 'PRKCSH',
'ENSG00000198003' => 'CCDC151',
'ENSMUSG00000003402' => 'Prkcsh',
'ENSMUSG00000039632' => 'Ccdc151'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00016V_0001',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '11420604',
'seq_end' => '11450968',
'region_length' => '30364',
'region_type' => 'CGP',
'el_id' => 'ENSG00000198003-ENSG00000130175'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00016V_0002',
'tax_id' => '10090',
'chromosome' => '9',
'seq_start' => '21989871',
'seq_end' => '22014219',
'region_length' => '24348',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000039632-ENSMUSG00000003402'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 6 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 16 => 'Brain',
(int) 23 => 'Breast',
(int) 30 => 'Colon',
(int) 38 => 'Heart',
(int) 44 => 'Kidney',
(int) 52 => 'Liver',
(int) 60 => 'Lung',
(int) 68 => 'Muscle',
(int) 79 => 'Ovary',
(int) 86 => 'Placenta',
(int) 94 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 29
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000585325' => array(
'start' => '11446316',
'end' => '11448018',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-012'
),
'ENST00000585540' => array(
'start' => '11447121',
'end' => '11448405',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-020'
),
'ENST00000586486' => array(
'start' => '11447565',
'end' => '11450968',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PRKCSH-006'
),
'ENST00000587290' => array(
'start' => '11447934',
'end' => '11449422',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-013'
),
'ENST00000587327' => array(
'start' => '11435745',
'end' => '11450867',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-005'
),
'ENST00000587509' => array(
'start' => '11435627',
'end' => '11441311',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-017'
),
'ENST00000588269' => array(
'start' => '11435624',
'end' => '11437884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-007'
),
'ENST00000589126' => array(
'start' => '11435619',
'end' => '11442422',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-016'
),
'ENST00000589838' => array(
'start' => '11436118',
'end' => '11450940',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-001'
),
'ENST00000589990' => array(
'start' => '11442407',
'end' => '11445846',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-019'
),
'ENST00000590098' => array(
'start' => '11447998',
'end' => '11449163',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-014'
),
'ENST00000591462' => array(
'start' => '11435288',
'end' => '11450965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-002'
),
'ENST00000591510' => array(
'start' => '11449779',
'end' => '11450967',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRKCSH-021'
),
'ENST00000591946' => array(
'start' => '11435401',
'end' => '11436495',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-010'
),
'ENST00000592435' => array(
'start' => '11448537',
'end' => '11449268',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-015'
),
'ENST00000592445' => array(
'start' => '11447065',
'end' => '11447940',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PRKCSH-011'
),
'ENST00000592741' => array(
'start' => '11435635',
'end' => '11450968',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-003'
),
'ENST00000593053' => array(
'start' => '11435632',
'end' => '11441252',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRKCSH-009'
),
'ENST00000593101' => array(
'start' => '11435740',
'end' => '11441321',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRKCSH-018'
),
'ENST00000593104' => array(
'start' => '11435630',
'end' => '11441105',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRKCSH-008'
),
'ENST00000356392' => array(
'start' => '11420604',
'end' => '11435104',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC151-001'
),
'ENST00000586836' => array(
'start' => '11420605',
'end' => '11435782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC151-005'
),
'ENST00000591179' => array(
'start' => '11420605',
'end' => '11435121',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC151-003'
),
'ENST00000591345' => array(
'start' => '11420604',
'end' => '11435178',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CCDC151-004'
),
'ENST00000593281' => array(
'start' => '11430559',
'end' => '11434899',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CCDC151-006'
),
'ENSMUST00000003493' => array(
'start' => '22003035',
'end' => '22014219',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prkcsh-201'
),
'ENSMUST00000115331' => array(
'start' => '22003035',
'end' => '22014219',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prkcsh-202'
),
'ENSMUST00000044926' => array(
'start' => '21989871',
'end' => '22002634',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc151-201'
),
'ENSMUST00000115336' => array(
'start' => '21989871',
'end' => '22002634',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc151-202'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_00016V_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000003402' => array(
[maximum depth reached]
),
'ENSMUSG00000039632' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Lung',
(int) 37 => 'Muscle',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adipose',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_00016V_0001',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '11420604',
'seq_end' => '11450968',
'region_length' => '30364',
'region_type' => 'CGP',
'el_id' => 'ENSG00000198003-ENSG00000130175'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(Prkcsh)