C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase C substrate 80K-H
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115331 Prkcsh-202 ENSMUSG00000003402 10090 + 9:22003035-22014219 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115331
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115331 9.936±0.92 61.719±32.18 14.139±0.11 16.097±2.34 6.149±1.66 8.284±3.08 3.669±1.90 8.767±0.69 13.209±6.39 5.786±1.35 2.916±1.06 17.984±8.89 33.115±10.88 4.666±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016V CIL_00016V_0002 CGP 9:21989871-22014219
CIL_00016O CIL_00016O_0003 CGP 9:22003035-22052023

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001889 IGI liver development
GO:0003723 IDA RNA binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005783 TAS endoplasmic reticulum
GO:0006491 TAS N-glycan processing
GO:0006807 IGI nitrogen compound metabolic process
GO:0010977 IMP negative regulation of neuron projection development
GO:0072001 IGI renal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000585540 PRKCSH-020 retained_intron Homo_sapiens 0 237
ENST00000587327 PRKCSH-005 protein_coding Homo_sapiens 0 1319
ENST00000589838 PRKCSH-001 protein_coding Homo_sapiens 0 1371
ENST00000591462 PRKCSH-002 protein_coding Homo_sapiens 0 1319
ENST00000592741 PRKCSH-003 protein_coding Homo_sapiens 0 1419

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