C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001HD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101134-ENSG00000054803 CGP 9606 20:54475597-56005472
GeneTranscriptPositionBiotype
ENSG00000054803 (CBLN4)
cerebellin 4 precursor 		ENST00000064571 (CBLN4-001) 55997440-56005472 protein_coding
ENSG00000101134 (DOK5)
docking protein 5 		ENST00000262593 (DOK5-001) 54475597-54651171 protein_coding
ENST00000395939 (DOK5-002) 54475718-54650890 protein_coding
ENST00000484860 (DOK5-004) 54554933-54555557 processed_transcript
ENST00000491469 (DOK5-003) 54475626-54495154 processed_transcript
ENSG00000185834 (RPL12P4)
ribosomal protein L12 pseudogene 4 		ENST00000432629 (RPL12P4-001) 55074644-55075140 processed_pseudogene
ENSG00000224008 (LINC01441)
long intergenic non-protein coding RNA 1441 		ENST00000433766 (LINC01441-001) 55420336-55427197 lincRNA
ENSG00000235166 (LINC01440)
long intergenic non-protein coding RNA 1440 		ENST00000416190 (LINC01440-002) 55423043-55468214 lincRNA
ENST00000450623 (LINC01440-001) 55423011-55426790 lincRNA
ENST00000596828 (LINC01440-004) 55423370-55426692 lincRNA
ENST00000598445 (LINC01440-003) 55423020-55426692 lincRNA
ENST00000608080 (LINC01440-005) 55423061-55426421 lincRNA
ENST00000610112 (LINC01440-006) 55423055-55426680 lincRNA
CIL_0001HD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027560-ENSMUSG00000067578 CGP 10090 2:170731807-172043466
GeneTranscriptPositionBiotype
ENSMUSG00000027560 (Dok5)
docking protein 5 		ENSMUST00000029075 (Dok5-001) 170731807-170879769 protein_coding
ENSMUSG00000067578 (Cbln4)
cerebellin 4 precursor protein 		ENSMUST00000087950 (Cbln4-001) 172036233-172043466 protein_coding
ENSMUSG00000080955 (Gm14263)
predicted gene 14263 		ENSMUST00000117955 (Gm14263-001) 170954079-170954824 processed_pseudogene
ENSMUSG00000084818 (Gm14640)
predicted gene 14640 		ENSMUST00000145800 (Gm14640-001) 171215499-171217947 lincRNA
ENSMUSG00000084829 (Gm14266)
predicted gene 14266 		ENSMUST00000125631 (Gm14266-002) 171193269-171269200 lincRNA
ENSMUST00000146542 (Gm14266-001) 171253284-171271350 lincRNA
ENSMUSG00000085426 (Gm14272)
predicted gene 14272 		ENSMUST00000133525 (Gm14272-001) 171988195-171989195 lincRNA
ENSMUSG00000086613 (1700007M16Rik)
RIKEN cDNA 1700007M16 gene 		ENSMUST00000129075 (1700007M16Rik-001) 171234009-171238991 lincRNA
ENSMUSG00000086823 (1700028P15Rik)
RIKEN cDNA 1700028P15 gene 		ENSMUST00000125465 (1700028P15Rik-004) 171958189-171962824 retained_intron
ENSMUST00000139894 (1700028P15Rik-001) 171956879-171962799 lincRNA
ENSMUST00000151904 (1700028P15Rik-003) 171958188-171962131 lincRNA
ENSMUSG00000087100 (Gm14641)
predicted gene 14641 		ENSMUST00000136486 (Gm14641-001) 171995941-172003995 lincRNA
ENSMUSG00000088505 (Gm26489)
predicted gene, 26489 		ENSMUST00000157880 (Gm26489-201) 171306168-171306431 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HD_0001ENSG00000054803ENST00000064571ENSG00000101134ENST00000262593ENST00000395939ENST00000484860ENST00000491469ENSG00000185834ENST00000432629ENSG00000224008ENST00000433766ENSG00000235166ENST00000416190ENST00000450623ENST00000596828ENST00000598445ENST00000608080ENST00000610112CIL_0001HD_0002ENSMUSG00000027560ENSMUST00000029075ENSMUSG00000067578ENSMUST00000087950ENSMUSG00000080955ENSMUST00000117955ENSMUSG00000084818ENSMUST00000145800ENSMUSG00000084829ENSMUST00000125631ENSMUST00000146542ENSMUSG00000085426ENSMUST00000133525ENSMUSG00000086613ENSMUST00000129075ENSMUSG00000086823ENSMUST00000125465ENSMUST00000139894ENSMUST00000151904ENSMUSG00000087100ENSMUST00000136486ENSMUSG00000088505ENSMUST00000157880
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HD_0001ENSG00000054803ENST00000064571ENSG00000101134ENST00000262593ENST00000395939ENST00000484860ENST00000491469ENSG00000185834ENST00000432629ENSG00000224008ENST00000433766ENSG00000235166ENST00000416190ENST00000450623ENST00000596828ENST00000598445CIL_0001HD_0002ENSMUSG00000027560ENSMUST00000029075ENSMUSG00000067578ENSMUST00000087950ENSMUSG00000080955ENSMUST00000117955ENSMUSG00000084818ENSMUST00000145800ENSMUSG00000084829ENSMUST00000125631ENSMUST00000146542ENSMUSG00000085426ENSMUST00000133525ENSMUSG00000086613ENSMUST00000129075ENSMUSG00000086823ENSMUST00000125465ENSMUST00000139894ENSMUSG00000087100ENSMUST00000136486ENSMUSG00000088505ENSMUST00000157880
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000054803 ENST00000064571 0.019±0.00 0.169±0.00 0.051±0.00 5.671±0.61 0.071±0.05 0.024±0.00 N/A 0.370±0.09 0.117±0.09 0.085±0.02 0.304±0.00 2.149±1.50 N/A 2.727±2.01
ENSG00000101134 ENST00000262593 0.280±0.00 1.547±0.00 N/A 4.315±0.15 1.301±1.17 1.037±0.00 1.208±0.80 2.342±0.00 0.240±0.00 1.049±0.00 1.598±0.15 1.873±1.51 0.539±0.37 0.736±0.45
ENST00000395939 N/A 0.567±0.00 0.224±0.00 N/A 0.603±0.00 0.968±0.00 0.469±0.00 N/A N/A 0.156±0.05 1.359±0.00 0.265±0.00 0.976±0.00 0.198±0.00
ENST00000484860 N/A N/A 0.600±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.229±0.00 N/A N/A
ENST00000491469 N/A N/A 0.449±0.00 N/A 0.809±0.00 N/A N/A 0.242±0.00 N/A 0.467±0.00 N/A 0.929±0.00 0.290±0.00 N/A
ENSG00000185834 ENST00000432629 N/A 0.038±0.00 N/A N/A 0.040±0.00 N/A 0.034±0.00 N/A N/A N/A 0.098±0.00 0.487±0.17 0.233±0.14 0.119±0.00
ENSG00000224008 ENST00000433766 0.068±0.00 0.073±0.00 N/A 0.005±0.00 0.022±0.01 0.004±0.00 N/A 0.042±0.01 0.034±0.00 0.008±0.00 N/A 0.019±0.00 0.019±0.00 0.131±0.00
ENSG00000235166 ENST00000416190 N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A
ENST00000450623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.914±0.97
ENST00000596828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.599±0.00
ENST00000598445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.00
ENST00000608080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027560 ENSMUST00000029075 0.257±0.12 0.231±0.10 0.106±0.07 9.335±4.88 0.331±0.26 0.398±0.17 0.566±0.09 0.062±0.03 0.162±0.08 0.160±0.12 1.152±0.21 0.443±0.23 0.731±0.36 0.051±0.04
ENSMUSG00000067578 ENSMUST00000087950 N/A N/A N/A 4.378±1.09 N/A 0.194±0.05 N/A N/A 0.015±0.01 0.015±0.00 N/A 0.028±0.02 0.021±0.01 0.122±0.07
ENSMUSG00000080955 ENSMUST00000117955 N/A 0.079±0.00 0.013±0.00 0.012±0.00 0.056±0.01 0.091±0.00 N/A N/A 0.021±0.01 N/A N/A 0.211±0.12 0.112±0.04 0.047±0.00
ENSMUSG00000084818 ENSMUST00000145800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.176±0.18
ENSMUSG00000084829 ENSMUST00000125631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.585±1.13
ENSMUST00000146542 N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A N/A N/A N/A 0.010±0.00 3.382±1.78
ENSMUSG00000085426 ENSMUST00000133525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.378±0.34 N/A N/A
ENSMUSG00000086613 ENSMUST00000129075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.761±0.28
ENSMUSG00000086823 ENSMUST00000125465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.299±0.27
ENSMUST00000139894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.375±0.00
ENSMUST00000151904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087100 ENSMUST00000136486 N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A N/A N/A N/A 0.382±0.06 N/A N/A
ENSMUSG00000088505 ENSMUST00000157880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.192±0.00

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