C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001JM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076569-ENSDARG00000004204 CGP 7955 9:34692637-34739632
GeneTranscriptPositionBiotype
ENSDARG00000004204 (efhc2)
EF-hand domain (C-terminal) containing 2 		ENSDART00000008737 (efhc2-001) 34716507-34739632 protein_coding
ENSDART00000142788 (efhc2-002) 34716509-34739616 nonsense_mediated_decay
CIL_0001JM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124479-ENSG00000183690 CGP 9606 X:43948776-44343672
GeneTranscriptPositionBiotype
ENSG00000124479 (NDP)
Norrie disease (pseudoglioma) 		ENST00000378062 (NDP-001) 43948776-43973504 protein_coding
ENST00000470584 (NDP-002) 43949682-43973386 processed_transcript
ENSG00000183690 (EFHC2)
EF-hand domain (C-terminal) containing 2 		ENST00000343571 (EFHC2-003) 44147882-44225756 processed_transcript
ENST00000420999 (EFHC2-001) 44148665-44343672 protein_coding
ENSG00000198414 (TATDN2P1)
TatD DNase domain containing 2 pseudogene 1 		ENST00000443767 (TATDN2P1-001) 44283916-44286246 processed_pseudogene
ENSG00000214018 (RRM2P3)
ribonucleotide reductase M2 polypeptide pseudogene 3 		ENST00000426279 (RRM2P3-001) 44309314-44310476 processed_pseudogene
ENSG00000214019 (RP6-218J18.2)
 ENST00000397254 (RP6-218J18.2-001) 44029332-44030921 processed_pseudogene
ENSG00000236276 (NDP-AS1)
NDP antisense RNA 1 		ENST00000435093 (NDP-AS1-001) 43949732-43969620 antisense
CIL_0001JM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040138-ENSMUSG00000025038 CGP 10090 X:16885521-17319368
GeneTranscriptPositionBiotype
ENSMUSG00000025038 (Efhc2)
EF-hand domain (C-terminal) containing 2 		ENSMUST00000026014 (Efhc2-001) 17132049-17319368 protein_coding
ENSMUSG00000040138 (Ndp)
Norrie disease (pseudoglioma) (human) 		ENSMUST00000040134 (Ndp-001) 16885521-16911774 protein_coding
ENSMUSG00000081858 (Gm14514)
predicted gene 14514 		ENSMUST00000121680 (Gm14514-001) 17252062-17254394 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JM_0001ENSDARG00000004204ENSDART00000008737ENSDART00000142788CIL_0001JM_0002ENSG00000124479ENST00000378062ENST00000470584ENSG00000183690ENST00000343571ENST00000420999ENSG00000198414ENST00000443767ENSG00000214018ENST00000426279ENSG00000214019ENST00000397254ENSG00000236276ENST00000435093CIL_0001JM_0003ENSMUSG00000025038ENSMUST00000026014ENSMUSG00000040138ENSMUST00000040134ENSMUSG00000081858ENSMUST00000121680
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JM_0001ENSDARG00000004204ENSDART00000008737ENSDART00000142788CIL_0001JM_0002ENSG00000124479ENST00000378062ENSG00000183690ENST00000343571ENST00000420999ENSG00000198414ENST00000443767ENSG00000214018ENST00000426279ENSG00000214019ENST00000397254ENSG00000236276ENST00000435093CIL_0001JM_0003ENSMUSG00000025038ENSMUST00000026014ENSMUSG00000040138ENSMUST00000040134ENSMUSG00000081858ENSMUST00000121680
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004204 ENSDART00000008737 N/A N/A N/A 0.423±0.38 N/A N/A N/A 0.857±0.91 N/A N/A 0.027±0.00 N/A N/A N/A
ENSDART00000142788 N/A N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A N/A 0.028±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124479 ENST00000378062 N/A N/A N/A 6.610±5.49 0.153±0.07 0.055±0.00 0.013±0.00 0.014±0.00 N/A N/A 0.057±0.00 3.018±3.28 7.495±4.68 1.706±1.27
ENST00000470584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183690 ENST00000343571 0.059±0.00 N/A N/A N/A 0.082±0.00 0.074±0.00 N/A N/A 0.009±0.00 0.484±0.00 N/A 0.118±0.10 0.114±0.00 N/A
ENST00000420999 0.064±0.00 0.239±0.00 0.298±0.00 0.693±0.34 0.115±0.01 0.249±0.08 2.175±1.38 0.454±0.00 0.425±0.00 1.207±0.74 N/A 0.899±0.55 0.262±0.16 4.487±0.26
ENSG00000198414 ENST00000443767 N/A N/A 0.064±0.00 0.014±0.00 0.020±0.00 N/A 0.203±0.00 N/A N/A N/A N/A N/A N/A 0.683±0.00
ENSG00000214018 ENST00000426279 0.026±0.00 0.211±0.00 0.047±0.00 0.112±0.00 0.159±0.00 N/A 0.248±0.16 0.148±0.00 0.044±0.00 0.160±0.06 N/A 0.151±0.16 0.060±0.02 0.218±0.02
ENSG00000214019 ENST00000397254 0.015±0.00 0.016±0.00 N/A N/A 0.015±0.00 0.007±0.00 N/A 0.016±0.00 N/A N/A 0.021±0.00 0.017±0.00 N/A 0.039±0.01
ENSG00000236276 ENST00000435093 N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A N/A 0.067±0.00 2.357±0.67 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025038 ENSMUST00000026014 0.124±0.11 0.108±0.03 0.091±0.02 0.502±0.18 0.080±0.06 0.059±0.00 0.049±0.02 0.136±0.03 0.015±0.00 0.181±0.02 0.068±0.02 0.283±0.14 0.130±0.07 5.169±1.03
ENSMUSG00000040138 ENSMUST00000040134 5.192±5.76 0.283±0.09 0.718±0.08 1.992±0.53 0.467±0.14 0.079±0.05 0.034±0.02 0.089±0.03 0.013±0.01 0.126±0.03 0.025±0.00 3.063±1.48 0.017±0.01 0.032±0.02
ENSMUSG00000081858 ENSMUST00000121680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.05

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