C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397254 RP6-218J18.2-001 ENSG00000214019 9606 + X:44029332-44030921 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyMuscleOvaryTestisENST00000397254
Transcript ID Adipose Adrenal Breast Colon Kidney Muscle Ovary Testis
ENST00000397254 0.015±0.00 0.016±0.00 0.015±0.00 0.007±0.00 0.016±0.00 0.021±0.00 0.017±0.00 0.039±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JM CIL_0001JM_0002 CGP X:43948776-44343672

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109587 Rbm39-001 protein_coding Mus_musculus 0 2093
ENSMUST00000155837 Rbm39-002 nonsense_mediated_decay Mus_musculus 0 2023
ENSMUST00000029149 Rbm39-018 protein_coding Mus_musculus 0 1988
ENSMUST00000146297 Rbm39-003 protein_coding Mus_musculus 0 1988
ENSMUST00000153514 Rbm39-025 nonsense_mediated_decay Mus_musculus 0 1947
ENSMUST00000142071 Rbm39-026 nonsense_mediated_decay Mus_musculus 0 1480
ENSMUST00000119414 Gm15575-001 processed_pseudogene Mus_musculus 0 1109
ENSMUST00000126992 Rbm39-020 protein_coding Mus_musculus 0 1016
ENSMUST00000182280 Gm8816-001 processed_pseudogene Mus_musculus 0 819
ENSMUST00000148794 Rbm39-019 protein_coding Mus_musculus 0 689
ENSMUST00000135274 Rbm39-017 retained_intron Mus_musculus 0 518
ENSMUST00000131625 Rbm39-016 processed_transcript Mus_musculus 0 396
ENSMUST00000130516 Rbm39-006 retained_intron Mus_musculus 0 320
ENSMUST00000161037 Gm8837-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000146288 Rbm39-021 protein_coding Mus_musculus 0 226

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