C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Norrie disease (pseudoglioma) (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040134 Ndp-001 ENSMUSG00000040138 10090 - X:16885521-16911774 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040134 5.192±5.76 0.283±0.09 0.718±0.08 1.992±0.53 0.467±0.14 0.079±0.05 0.034±0.02 0.089±0.03 0.013±0.01 0.126±0.03 0.025±0.00 3.063±1.48 0.017±0.01 0.032±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JL CIL_0001JL_0003 CGP X:16709282-16911774
CIL_0001JM CIL_0001JM_0003 CGP X:16885521-17319368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001890 IMP placenta development
GO:0005109 IPI frizzled binding
GO:0005125 IDA cytokine activity
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0009986 IEA cell surface
GO:0016055 IEA Wnt signaling pathway
GO:0031012 IDA extracellular matrix
GO:0035426 IDA extracellular matrix-cell signaling
GO:0042803 IEA protein homodimerization activity
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0060070 IDA canonical Wnt signaling pathway
GO:0061299 IGI retina vasculature morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378062 NDP-001 protein_coding Homo_sapiens 0 1266
ENST00000470584 NDP-002 processed_transcript Homo_sapiens 0 278

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