C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001JR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000056563-ENSDARG00000000380 CGP 7955 14:26013242-26112198
GeneTranscriptPositionBiotype
ENSDARG00000000380 (pde6a)
phosphodiesterase 6A, cGMP-specific, rod, alpha 		ENSDART00000000392 (pde6a-001) 26083459-26112198 protein_coding
ENSDARG00000056563 (ppargc1b)
peroxisome proliferative activated receptor, gamma, coactivator 1, beta 		ENSDART00000079080 (ppargc1b-001) 26013242-26076678 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001JR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000155846-ENSG00000132915 CGP 9606 5:149730298-149944793
GeneTranscriptPositionBiotype
ENSG00000155846 (PPARGC1B)
peroxisome proliferator-activated receptor gamma, coactivator 1 beta 		ENST00000309241 (PPARGC1B-001) 149730311-149855022 protein_coding
ENST00000360453 (PPARGC1B-005) 149730298-149847562 protein_coding
ENST00000394320 (PPARGC1B-003) 149730301-149847704 protein_coding
ENST00000403750 (PPARGC1B-002) 149771940-149847627 protein_coding
ENST00000434684 (PPARGC1B-004) 149833015-149847718 protein_coding
ENST00000461780 (PPARGC1B-006) 149730303-149817746 processed_transcript
ENST00000492495 (PPARGC1B-008) 149845643-149847757 retained_intron
ENSG00000199047 (MIR378A)
microRNA 378a 		ENST00000362177 (MIR378A-201) 149732797-149732908 miRNA
ENSG00000251583 (AC008427.2)
 ENST00000503102 (AC008427.2-001) 149932014-149932668 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JR_0001ENSDARG00000000380ENSDART00000000392ENSDARG00000056563ENSDART00000079080CIL_0001JR_0002ENSG00000155846ENST00000309241ENST00000360453ENST00000394320ENST00000403750ENST00000434684ENST00000461780ENST00000492495ENSG00000199047ENST00000362177ENSG00000251583ENST00000503102
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JR_0001ENSDARG00000000380ENSDART00000000392ENSDARG00000056563ENSDART00000079080CIL_0001JR_0002ENSG00000155846ENST00000309241ENST00000360453ENST00000394320ENST00000434684ENSG00000199047ENST00000362177ENSG00000251583ENST00000503102
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000000380 ENSDART00000000392 N/A N/A N/A 0.380±0.09 N/A N/A 0.049±0.00 0.269±0.27 N/A N/A 0.150±0.00 N/A N/A N/A
ENSDARG00000056563 ENSDART00000079080 N/A N/A N/A N/A N/A N/A 4.200±3.41 3.811±1.01 0.487±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155846 ENST00000309241 N/A N/A N/A 0.518±0.16 0.426±0.00 0.790±0.00 0.902±0.41 0.234±0.01 0.544±0.40 N/A 1.226±0.00 0.299±0.30 0.185±0.02 0.168±0.12
ENST00000360453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A
ENST00000394320 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.346±0.00 N/A N/A N/A N/A
ENST00000403750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.385±0.00 N/A
ENST00000461780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199047 ENST00000362177 N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A N/A N/A N/A N/A
ENSG00000251583 ENST00000503102 0.019±0.00 N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A 0.018±0.00 0.048±0.00 N/A 5.284±3.21

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