C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcoglycan, beta (dystrophin-associated glycoprotein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081170 Sgcb-201 ENSMUSG00000029156 10090 - 5:73632749-73647713 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081170
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081170 9.936±2.44 4.334±0.82 12.850±0.21 6.123±1.74 8.574±2.12 2.645±0.83 27.684±2.56 3.773±0.75 1.072±0.45 6.807±1.30 23.430±1.18 7.896±1.95 2.561±1.19 12.659±5.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MR CIL_0001MR_0002 CGP 5:73606643-73647713
CIL_0001CP CIL_0001CP_0002 CGP 5:73632749-73679484

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005887 TAS integral component of plasma membrane
GO:0007517 IEA muscle organ development
GO:0016010 IEA dystrophin-associated glycoprotein complex
GO:0016011 IDA dystroglycan complex
GO:0016012 IEA sarcoglycan complex
GO:0042383 IDA sarcolemma
GO:0048747 IMP muscle fiber development
GO:0055013 IMP cardiac muscle cell development
GO:0061024 TAS membrane organization
GO:0097084 IMP vascular smooth muscle cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000381431 SGCB-001 protein_coding Homo_sapiens 0 1013

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