C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001MS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000109184-ENSG00000188993 CGP 9606 4:51843000-52017620
GeneTranscriptPositionBiotype
ENSG00000109184 (DCUN1D4)
DCN1, defective in cullin neddylation 1, domain containing 4 		ENST00000334635 (DCUN1D4-001) 51843063-51916837 protein_coding
ENST00000381441 (DCUN1D4-002) 51843063-51916837 protein_coding
ENST00000451288 (DCUN1D4-201) 51843579-51916835 protein_coding
ENST00000477560 (DCUN1D4-003) 51843197-51916837 nonsense_mediated_decay
ENST00000502930 (DCUN1D4-008) 51843133-51891823 nonsense_mediated_decay
ENST00000504113 (DCUN1D4-009) 51843131-51887190 processed_transcript
ENST00000504661 (DCUN1D4-013) 51844884-51874367 processed_transcript
ENST00000504923 (DCUN1D4-014) 51877456-51891851 retained_intron
ENST00000505403 (DCUN1D4-012) 51843579-51891851 protein_coding
ENST00000505634 (DCUN1D4-017) 51886568-51913835 nonsense_mediated_decay
ENST00000506673 (DCUN1D4-007) 51843103-51877798 nonsense_mediated_decay
ENST00000507659 (DCUN1D4-016) 51884911-51913642 processed_transcript
ENST00000507741 (DCUN1D4-005) 51843153-51914036 nonsense_mediated_decay
ENST00000508257 (DCUN1D4-020) 51909400-51914102 processed_transcript
ENST00000509068 (DCUN1D4-011) 51843541-51891851 nonsense_mediated_decay
ENST00000509376 (DCUN1D4-004) 51843000-51914294 nonsense_mediated_decay
ENST00000510518 (DCUN1D4-021) 51910753-51913392 retained_intron
ENST00000510587 (DCUN1D4-015) 51884326-51911114 processed_transcript
ENST00000510808 (DCUN1D4-018) 51891807-51913835 protein_coding
ENST00000511675 (DCUN1D4-006) 51843061-51877972 retained_intron
ENST00000512199 (DCUN1D4-019) 51899337-51913723 nonsense_mediated_decay
ENST00000513800 (DCUN1D4-010) 51843153-51875328 processed_transcript
ENSG00000188993 (LRRC66)
leucine rich repeat containing 66 		ENST00000343457 (LRRC66-001) 51993702-52017620 protein_coding
ENSG00000250473 (DUTP7)
deoxyuridine triphosphatase pseudogene 7 		ENST00000507982 (DUTP7-001) 51865050-51865535 processed_pseudogene
ENSG00000272576 (RP11-365H22.2)
 ENST00000610270 (RP11-365H22.2-001) 51918772-51919381 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0001MS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051674-ENSMUSG00000067206 CGP 10090 5:73481002-73632505
GeneTranscriptPositionBiotype
ENSMUSG00000051674 (Dcun1d4)
DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) 		ENSMUST00000063882 (Dcun1d4-001) 73491026-73560794 protein_coding
ENSMUST00000087181 (Dcun1d4-002) 73481002-73557989 protein_coding
ENSMUST00000113558 (Dcun1d4-003) 73491067-73560790 protein_coding
ENSMUST00000130087 (Dcun1d4-004) 73484444-73557700 nonsense_mediated_decay
ENSMUST00000133137 (Dcun1d4-010) 73491123-73531507 nonsense_mediated_decay
ENSMUST00000134092 (Dcun1d4-011) 73491067-73544048 nonsense_mediated_decay
ENSMUST00000136268 (Dcun1d4-009) 73510868-73534691 protein_coding
ENSMUST00000141553 (Dcun1d4-005) 73491439-73522676 protein_coding
ENSMUST00000145645 (Dcun1d4-006) 73492430-73534675 protein_coding
ENSMUST00000149970 (Dcun1d4-008) 73492847-73520133 processed_transcript
ENSMUST00000156806 (Dcun1d4-007) 73492656-73522719 protein_coding
ENSMUSG00000067206 (Lrrc66)
leucine rich repeat containing 66 		ENSMUST00000087177 (Lrrc66-001) 73606643-73632505 protein_coding
ENSMUST00000152215 (Lrrc66-002) 73629676-73630311 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001MS_0001ENSG00000109184ENST00000334635ENST00000381441ENST00000451288ENST00000477560ENST00000502930ENST00000504113ENST00000504661ENST00000504923ENST00000505403ENST00000505634ENST00000506673ENST00000507659ENST00000507741ENST00000508257ENST00000509068ENST00000509376ENST00000510518ENST00000510587ENST00000510808ENST00000511675ENST00000512199ENST00000513800ENSG00000188993ENST00000343457ENSG00000250473ENST00000507982ENSG00000272576ENST00000610270CIL_0001MS_0002ENSMUSG00000051674ENSMUST00000063882ENSMUST00000087181ENSMUST00000113558ENSMUST00000130087ENSMUST00000133137ENSMUST00000134092ENSMUST00000136268ENSMUST00000141553ENSMUST00000145645ENSMUST00000149970ENSMUST00000156806ENSMUSG00000067206ENSMUST00000087177ENSMUST00000152215
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001MS_0001ENSG00000109184ENST00000334635ENST00000381441ENST00000451288ENST00000477560ENST00000502930ENST00000504113ENST00000505403ENST00000506673ENST00000507741ENSG00000188993ENST00000343457ENSG00000250473ENST00000507982ENSG00000272576ENST00000610270CIL_0001MS_0002ENSMUSG00000051674ENSMUST00000063882ENSMUST00000087181ENSMUST00000113558ENSMUST00000134092ENSMUST00000136268ENSMUSG00000067206ENSMUST00000087177ENSMUST00000152215
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109184 ENST00000334635 2.345±0.00 1.473±0.00 0.973±0.00 4.283±0.58 2.360±0.79 4.479±0.00 2.247±0.00 1.877±0.00 2.909±0.45 2.520±1.21 0.966±0.00 3.115±1.86 1.002±0.50 4.314±1.48
ENST00000381441 1.442±0.00 0.368±0.00 N/A 1.800±0.02 1.262±0.46 N/A 1.522±0.17 2.663±0.65 2.425±0.00 1.451±0.00 0.756±0.36 2.323±0.12 0.347±0.04 3.885±0.00
ENST00000451288 N/A N/A N/A N/A N/A 1.836±0.00 N/A N/A N/A N/A N/A N/A 0.335±0.00 N/A
ENST00000477560 0.685±0.00 0.606±0.00 0.738±0.00 1.242±0.00 0.850±0.00 0.861±0.00 N/A N/A N/A N/A N/A 1.328±0.33 N/A 2.440±0.00
ENST00000502930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.075±0.00 N/A N/A
ENST00000504113 N/A N/A 7.410±0.00 19.381±0.00 8.047±0.00 11.598±0.00 7.937±0.00 N/A 33.040±0.00 12.662±0.00 N/A 9.154±0.00 2.165±0.00 17.155±0.00
ENST00000504661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505403 N/A N/A N/A N/A N/A N/A N/A N/A 13.569±0.00 N/A N/A 5.215±0.72 3.859±0.00 28.453±0.00
ENST00000505634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.767±0.00 N/A N/A N/A
ENST00000507659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507741 N/A N/A 1.945±0.00 4.554±0.00 N/A 2.288±0.00 1.562±0.00 4.202±0.00 N/A N/A N/A N/A N/A N/A
ENST00000508257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188993 ENST00000343457 0.019±0.00 0.063±0.00 0.168±0.00 0.148±0.03 0.488±0.18 0.130±0.00 0.049±0.02 0.605±0.00 0.026±0.01 0.064±0.00 0.514±0.16 0.140±0.08 0.016±0.01 0.349±0.00
ENSG00000250473 ENST00000507982 N/A N/A N/A 0.028±0.00 0.455±0.32 N/A 0.547±0.00 N/A N/A N/A 0.289±0.00 0.053±0.00 N/A 0.054±0.00
ENSG00000272576 ENST00000610270 N/A 0.144±0.00 N/A 0.658±0.20 0.430±0.27 0.270±0.10 0.130±0.02 0.169±0.06 N/A 0.065±0.00 N/A 0.336±0.15 N/A 0.162±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000051674 ENSMUST00000063882 0.756±0.00 1.872±0.00 5.189±0.02 8.380±1.76 1.339±0.00 0.892±0.00 1.450±0.57 1.861±0.65 1.321±0.14 0.820±0.00 2.309±0.28 2.872±1.54 4.892±3.27 N/A
ENSMUST00000087181 N/A 2.086±0.00 N/A 11.686±0.00 N/A N/A N/A N/A 3.156±0.08 1.458±0.00 N/A 3.230±0.00 8.825±2.04 41.580±4.05
ENSMUST00000113558 4.427±0.49 3.423±1.54 0.750±0.04 2.590±0.63 3.163±0.72 2.578±0.53 2.132±0.61 5.835±0.52 4.484±3.52 3.561±0.56 N/A 4.246±2.09 2.847±0.81 7.235±0.47
ENSMUST00000130087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134092 N/A 2.587±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136268 N/A N/A N/A 80.290±0.00 N/A N/A N/A N/A N/A N/A N/A 32.109±0.00 37.875±1.70 343.973±0.00
ENSMUST00000141553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000067206 ENSMUST00000087177 0.031±0.01 N/A 0.026±0.02 0.014±0.00 0.015±0.01 2.416±0.46 0.022±0.01 2.218±0.72 0.019±0.01 0.053±0.03 0.011±0.00 0.114±0.08 0.041±0.02 0.632±0.27
ENSMUST00000152215 N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A 0.046±0.01 N/A N/A 0.833±0.00 0.372±0.00 N/A

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