C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001NR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000187600-ENSG00000250565 CGP 9606 2:46429190-46542557
GeneTranscriptPositionBiotype
ENSG00000119729 (RHOQ)
ras homolog family member Q 		ENST00000238738 (RHOQ-001) 46542728-46583121 protein_coding
ENST00000432183 (RHOQ-003) 46542736-46576656 nonsense_mediated_decay
ENST00000465198 (RHOQ-004) 46541806-46576249 processed_transcript
ENST00000473428 (RHOQ-007) 46543767-46581318 nonsense_mediated_decay
ENST00000482449 (RHOQ-002) 46543400-46576656 protein_coding
ENST00000489448 (RHOQ-008) 46580284-46581046 retained_intron
ENST00000489471 (RHOQ-006) 46543149-46581270 nonsense_mediated_decay
ENST00000494370 (RHOQ-005) 46576128-46577125 retained_intron
ENST00000616091 (RHOQ-201) 46543021-46581083 protein_coding
ENSG00000241791 (RN7SL817P)
RNA, 7SL, cytoplasmic 817, pseudogene 		ENST00000480777 (RN7SL817P-201) 46448224-46448511 misc_RNA
ENSG00000250565 (ATP6V1E2)
ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2 		ENST00000306448 (ATP6V1E2-001) 46511847-46519957 protein_coding
ENST00000505245 (ATP6V1E2-003) 46534300-46542002 processed_transcript
ENST00000522219 (ATP6V1E2-006) 46535813-46541589 processed_transcript
ENST00000522587 (ATP6V1E2-002) 46511867-46542557 protein_coding
ENST00000524188 (ATP6V1E2-004) 46527878-46541583 processed_transcript
ENST00000524249 (ATP6V1E2-005) 46490750-46542178 processed_transcript
ENSG00000253515 (RP11-417F21.2)
 ENST00000517716 (RP11-417F21.2-001) 46499731-46501278 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0001NR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037689-ENSMUSG00000053375 CGP 10090 17:86917348-86947887
GeneTranscriptPositionBiotype
ENSMUSG00000037689 (Tmem247)
transmembrane protein 247 		ENSMUST00000042172 (Tmem247-201) 86917348-86922366 protein_coding
ENSMUSG00000053375 (Atp6v1e2)
ATPase, H+ transporting, lysosomal V1 subunit E2 		ENSMUST00000065758 (Atp6v1e2-201) 86944109-86947887 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NR_0001ENSG00000119729ENST00000238738ENST00000432183ENST00000465198ENST00000473428ENST00000482449ENST00000489448ENST00000489471ENST00000494370ENST00000616091ENSG00000241791ENST00000480777ENSG00000250565ENST00000306448ENST00000505245ENST00000522219ENST00000522587ENST00000524188ENST00000524249ENSG00000253515ENST00000517716CIL_0001NR_0002ENSMUSG00000037689ENSMUST00000042172ENSMUSG00000053375ENSMUST00000065758
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NR_0001ENSG00000119729ENST00000238738ENST00000616091ENSG00000241791ENST00000480777ENSG00000250565ENST00000306448ENST00000522587ENSG00000253515ENST00000517716CIL_0001NR_0002ENSMUSG00000037689ENSMUST00000042172ENSMUSG00000053375ENSMUST00000065758
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119729 ENST00000238738 25.942±0.00 13.416±0.00 N/A 16.179±0.00 28.274±22.40 14.626±10.63 43.043±29.64 16.132±0.00 3.537±0.00 24.857±0.00 18.356±8.47 10.370±4.11 10.641±2.02 16.262±0.00
ENST00000432183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616091 N/A N/A N/A N/A N/A N/A N/A N/A 20.363±0.00 7.792±0.00 N/A N/A 20.052±0.00 N/A
ENSG00000241791 ENST00000480777 0.124±0.00 0.129±0.00 N/A 0.071±0.00 0.067±0.00 N/A N/A 0.533±0.00 N/A 0.064±0.00 N/A 0.517±0.00 N/A N/A
ENSG00000250565 ENST00000306448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.074±0.00
ENST00000505245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.965±0.00
ENST00000524188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253515 ENST00000517716 N/A 0.143±0.00 N/A 0.164±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.192±0.02 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037689 ENSMUST00000042172 N/A N/A N/A N/A 0.065±0.01 N/A 0.064±0.03 0.050±0.00 N/A 0.103±0.00 N/A 0.097±0.00 N/A 309.505±106.03
ENSMUSG00000053375 ENSMUST00000065758 N/A N/A 0.018±0.00 0.042±0.01 N/A 0.094±0.04 0.074±0.00 0.088±0.00 0.006±0.00 N/A N/A 0.069±0.03 N/A 104.278±9.56

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