C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog family member Q
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000238738 RHOQ-001 ENSG00000119729 9606 + 2:46542728-46583121 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000238738
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000238738 25.942±0.00 13.416±0.00 16.179±0.00 28.274±22.40 14.626±10.63 43.043±29.64 16.132±0.00 3.537±0.00 24.857±0.00 18.356±8.47 10.370±4.11 10.641±2.02 16.262±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NR CIL_0001NR_0001 CGP 2:46429190-46542557
CIL_0001NS CIL_0001NS_0001 CGP 2:46490750-46583121
CIL_0001ND CIL_0001ND_0001 CGP 2:46541806-46617119

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IDA GTPase activity
GO:0005515 IEA protein binding
GO:0005522 IPI profilin binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005884 IDA actin filament
GO:0005886 IDA plasma membrane
GO:0006184 IDA:IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA:TAS small GTPase mediated signal transduction
GO:0008286 IMP insulin receptor signaling pathway
GO:0008360 IEA regulation of cell shape
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0030866 IMP cortical actin cytoskeleton organization
GO:0032427 IPI GBD domain binding
GO:0032869 IMP cellular response to insulin stimulus
GO:0032956 IC regulation of actin cytoskeleton organization
GO:0045121 IEA membrane raft
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046326 IMP positive regulation of glucose import
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0051491 IDA positive regulation of filopodium assembly
GO:0070062 IDA extracellular vesicular exosome
GO:0090005 IMP negative regulation of establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024956 Rhoq-001 protein_coding Mus_musculus 0 2156
ENSMUST00000139344 Rhoq-002 protein_coding Mus_musculus 0 712
ENSMUST00000024957 Pigf-001 protein_coding Mus_musculus 0 361
ENSMUST00000055390 Rhoj-001 protein_coding Mus_musculus 0 279
ENSMUST00000118966 Rhoj-002 protein_coding Mus_musculus 0 267
ENSMUST00000118602 Rhoj-003 protein_coding Mus_musculus 0 267
ENSMUST00000172981 Rhoj-005 nonsense_mediated_decay Mus_musculus 3e-22 111
ENSDART00000044690 rac3b-201 protein_coding Danio_rerio 0.0000000005 71
ENSDART00000122905 rac3b-001 protein_coding Danio_rerio 0.0000000005 71

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