| Source ID |
Type |
Tax ID |
Position |
| ENSG00000227140-ENSG00000235780 |
CGP |
9606 |
4:9339403-9345740  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0001XF_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0001XF_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_000N' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_000O' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000223569' => 'ubiquitin specific peptidase 17-like family member 15',
'ENSG00000227140' => 'ubiquitin specific peptidase 17-like family member 5',
'ENSG00000228856' => 'ubiquitin specific peptidase 17-like family member 30',
'ENSG00000229579' => 'ubiquitin specific peptidase 17-like family member 26',
'ENSG00000230430' => 'ubiquitin specific peptidase 17-like family member 25',
'ENSG00000231051' => 'ubiquitin specific peptidase 17-like family member 28',
'ENSG00000231637' => 'ubiquitin specific peptidase 17-like family member 29',
'ENSG00000232264' => 'ubiquitin specific peptidase 17-like family member 24',
'ENSG00000235780' => 'ubiquitin specific peptidase 17-like family member 27',
'ENSG00000248920' => 'ubiquitin specific peptidase 17-like family member 19',
'ENSG00000248933' => 'ubiquitin specific peptidase 17-like family member 22',
'ENSG00000249104' => 'ubiquitin specific peptidase 17-like family member 17',
'ENSG00000249811' => 'ubiquitin specific peptidase 17-like family member 21',
'ENSG00000250231' => 'ubiquitin specific peptidase 17-like family member 16, pseudogene',
'ENSG00000250745' => 'ubiquitin specific peptidase 17-like family member 20',
'ENSG00000250844' => 'ubiquitin specific peptidase 17-like family member 18',
'ENSG00000250913' => 'ubiquitin specific peptidase 17-like family member 23',
'ENSG00000251694' => 'ubiquitin specific peptidase 17-like family member 9, pseudogene',
'ENSG00000223443' => 'ubiquitin specific peptidase 17-like family member 2',
'ENSG00000226430' => 'ubiquitin specific peptidase 17-like family member 7',
'ENSG00000227551' => 'ubiquitin specific peptidase 17-like family member 12',
'ENSG00000232399' => 'ubiquitin specific peptidase 17-like family member 13',
'ENSG00000230549' => 'ubiquitin specific peptidase 17-like family member 1',
'ENSG00000236125' => 'ubiquitin specific peptidase 17-like family member 4',
'ENSG00000231396' => 'ubiquitin specific peptidase 17-like family member 10',
'ENSG00000233136' => 'ubiquitin specific peptidase 17-like family member 11',
'ENSG00000249482' => 'ubiquitin specific peptidase 17-like family member 14, pseudogene',
'ENSG00000225327' => 'ubiquitin specific peptidase 17-like family member 3',
'ENSG00000237038' => 'ubiquitin specific peptidase 17-like family member 8',
'ENSMUSG00000043073' => 'ubiquitin specific peptidase 17-like E',
'ENSMUSG00000062369' => 'ubiquitin specific peptidase 17-like B',
'ENSMUSG00000086229' => 'predicted gene 4887',
'ENSMUSG00000054568' => 'ubiquitin specific peptidase 17-like A'
),
'gene_name_arr' => array(
'ENSG00000223569' => 'USP17L15',
'ENSG00000227140' => 'USP17L5',
'ENSG00000228856' => 'USP17L30',
'ENSG00000229579' => 'USP17L26',
'ENSG00000230430' => 'USP17L25',
'ENSG00000231051' => 'USP17L28',
'ENSG00000231637' => 'USP17L29',
'ENSG00000232264' => 'USP17L24',
'ENSG00000235780' => 'USP17L27',
'ENSG00000248920' => 'USP17L19',
'ENSG00000248933' => 'USP17L22',
'ENSG00000249104' => 'USP17L17',
'ENSG00000249811' => 'USP17L21',
'ENSG00000250231' => 'USP17L16P',
'ENSG00000250745' => 'USP17L20',
'ENSG00000250844' => 'USP17L18',
'ENSG00000250913' => 'USP17L23',
'ENSG00000251694' => 'USP17L9P',
'ENSG00000223443' => 'USP17L2',
'ENSG00000226430' => 'USP17L7',
'ENSG00000227551' => 'USP17L12',
'ENSG00000232399' => 'USP17L13',
'ENSG00000230549' => 'USP17L1P',
'ENSG00000236125' => 'USP17L4',
'ENSG00000231396' => 'USP17L10',
'ENSG00000233136' => 'USP17L11',
'ENSG00000249482' => 'USP17L14P',
'ENSG00000225327' => 'USP17L3',
'ENSG00000237038' => 'USP17L8',
'ENSMUSG00000043073' => 'Usp17le',
'ENSMUSG00000062369' => 'Usp17lb',
'ENSMUSG00000086229' => 'Gm4887',
'ENSMUSG00000054568' => 'Usp17la'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 9 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 10 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 11 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 12 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 13 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 14 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 15 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 16 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 17 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 18 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 19 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 20 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 21 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 22 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 23 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 8 => 'Brain',
(int) 13 => 'Breast',
(int) 18 => 'Colon',
(int) 22 => 'Heart',
(int) 25 => 'Kidney',
(int) 27 => 'Liver',
(int) 38 => 'Lung',
(int) 44 => 'Ovary',
(int) 56 => 'Placenta',
(int) 63 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 131,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000456464' => array(
'start' => '9234385',
'end' => '9235974',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L15-001'
),
'ENST00000614248' => array(
'start' => '9234385',
'end' => '9365080',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L15-201'
),
'ENST00000621432' => array(
'start' => '9234385',
'end' => '9236334',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L15-202'
),
'ENST00000507227' => array(
'start' => '9339403',
'end' => '9340995',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L5-001'
),
'ENST00000504104' => array(
'start' => '9363129',
'end' => '9364721',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L30-001'
),
'ENST00000509660' => array(
'start' => '9334658',
'end' => '9336250',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L26-001'
),
'ENST00000610514' => array(
'start' => '9334658',
'end' => '9336609',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L26-201'
),
'ENST00000509271' => array(
'start' => '9329911',
'end' => '9331503',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L25-001'
),
'ENST00000621472' => array(
'start' => '9329911',
'end' => '9331862',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L25-201'
),
'ENST00000504543' => array(
'start' => '9348893',
'end' => '9350485',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L28-001'
),
'ENST00000511681' => array(
'start' => '9353638',
'end' => '9355230',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L29-001'
),
'ENST00000504481' => array(
'start' => '9325165',
'end' => '9326757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L24-001'
),
'ENST00000622713' => array(
'start' => '9325165',
'end' => '9327116',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L24-201'
),
'ENST00000515574' => array(
'start' => '9344148',
'end' => '9345740',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L27-001'
),
'ENST00000515566' => array(
'start' => '9253378',
'end' => '9254970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L19-001'
),
'ENST00000615989' => array(
'start' => '9253378',
'end' => '9255329',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L19-201'
),
'ENST00000511280' => array(
'start' => '9267619',
'end' => '9269211',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L22-001'
),
'ENST00000622009' => array(
'start' => '9267619',
'end' => '9269570',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L22-201'
),
'ENST00000511568' => array(
'start' => '9243879',
'end' => '9245471',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L17-001'
),
'ENST00000614762' => array(
'start' => '9243879',
'end' => '9245830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L17-201'
),
'ENST00000506414' => array(
'start' => '9262872',
'end' => '9264464',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L21-001'
),
'ENST00000621388' => array(
'start' => '9262872',
'end' => '9264823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L21-201'
),
'ENST00000507155' => array(
'start' => '9239130',
'end' => '9240722',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'USP17L16P-001'
),
'ENST00000506151' => array(
'start' => '9258124',
'end' => '9259716',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L20-001'
),
'ENST00000613757' => array(
'start' => '9258124',
'end' => '9260075',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L20-201'
),
'ENST00000504209' => array(
'start' => '9248630',
'end' => '9250222',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L18-001'
),
'ENST00000619296' => array(
'start' => '9248630',
'end' => '9250581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L18-201'
),
'ENST00000506619' => array(
'start' => '9272364',
'end' => '9272914',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L23-001'
),
'ENST00000508843' => array(
'start' => '9358383',
'end' => '9359975',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'USP17L9P-001'
),
'ENST00000333796' => array(
'start' => '12137168',
'end' => '12139077',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L2-001'
),
'ENST00000530447' => array(
'start' => '12132417',
'end' => '12134444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L7-001'
),
'ENST00000415041' => array(
'start' => '9220152',
'end' => '9221744',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L12-001'
),
'ENST00000429667' => array(
'start' => '9224896',
'end' => '9226488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L13-001'
),
'ENST00000616303' => array(
'start' => '9224896',
'end' => '9226847',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L13-201'
),
'ENST00000529559' => array(
'start' => '7332387',
'end' => '7333979',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L1P-001'
),
'ENST00000526929' => array(
'start' => '7337115',
'end' => '7338707',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L4-001'
),
'ENST00000417945' => array(
'start' => '9210657',
'end' => '9212249',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L10-001'
),
'ENST00000421288' => array(
'start' => '9210657',
'end' => '9212608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L10-201'
),
'ENST00000457736' => array(
'start' => '9215405',
'end' => '9216997',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L11-001'
),
'ENST00000613973' => array(
'start' => '9215405',
'end' => '9217356',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L11-201'
),
'ENST00000504838' => array(
'start' => '9229641',
'end' => '9231233',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'USP17L14P-001'
),
'ENST00000530484' => array(
'start' => '7976393',
'end' => '7977985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L3-001'
),
'ENST00000527080' => array(
'start' => '7971661',
'end' => '7973253',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L8-001'
),
'ENST00000625190' => array(
'start' => '7971661',
'end' => '7977985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L8-201'
),
'ENSMUST00000053464' => array(
'start' => '104768160',
'end' => '104777470',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17le-201'
),
'ENSMUST00000076501' => array(
'start' => '104840312',
'end' => '104842504',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17lb-201'
),
'ENSMUST00000106814' => array(
'start' => '104840257',
'end' => '104842603',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17lb-202'
),
'ENSMUST00000122230' => array(
'start' => '104821204',
'end' => '104822256',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm4887-001'
),
'ENSMUST00000067695' => array(
'start' => '104857009',
'end' => '104862667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17la-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0001XF_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_000N' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_000O' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0001XF_0002' => array(
'genes_in_region' => array(
'ENSG00000223443' => array(
[maximum depth reached]
),
'ENSG00000226430' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Breast',
(int) 2 => 'Colon',
(int) 3 => 'Liver',
(int) 4 => 'Lung',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Bladder',
(int) 9 => 'Brain',
(int) 10 => 'Breast',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Ovary'
)
),
'CIL_0001XF_0007' => array(
'genes_in_region' => array(
'ENSG00000230549' => array(
[maximum depth reached]
),
'ENSG00000236125' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Bladder',
(int) 2 => 'Lung'
)
),
'CIL_0001XF_000C' => array(
'genes_in_region' => array(
'ENSG00000249482' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Liver',
(int) 3 => 'Ovary',
(int) 4 => 'Ovary'
)
),
'CIL_0001XF_000N' => array(
'genes_in_region' => array(
'ENSMUSG00000043073' => array(
[maximum depth reached]
),
'ENSMUSG00000062369' => array(
[maximum depth reached]
),
'ENSMUSG00000086229' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis'
)
),
'CIL_0001XF_000O' => array(
'genes_in_region' => array(
'ENSMUSG00000054568' => array(
[maximum depth reached]
),
'ENSMUSG00000062369' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Liver',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000223569' => 'ubiquitin specific peptidase 17-like family member 15',
'ENSG00000227140' => 'ubiquitin specific peptidase 17-like family member 5',
'ENSG00000228856' => 'ubiquitin specific peptidase 17-like family member 30',
'ENSG00000229579' => 'ubiquitin specific peptidase 17-like family member 26',
'ENSG00000230430' => 'ubiquitin specific peptidase 17-like family member 25',
'ENSG00000231051' => 'ubiquitin specific peptidase 17-like family member 28',
'ENSG00000231637' => 'ubiquitin specific peptidase 17-like family member 29',
'ENSG00000232264' => 'ubiquitin specific peptidase 17-like family member 24',
'ENSG00000235780' => 'ubiquitin specific peptidase 17-like family member 27',
'ENSG00000248920' => 'ubiquitin specific peptidase 17-like family member 19',
'ENSG00000248933' => 'ubiquitin specific peptidase 17-like family member 22',
'ENSG00000249104' => 'ubiquitin specific peptidase 17-like family member 17',
'ENSG00000249811' => 'ubiquitin specific peptidase 17-like family member 21',
'ENSG00000250231' => 'ubiquitin specific peptidase 17-like family member 16, pseudogene',
'ENSG00000250745' => 'ubiquitin specific peptidase 17-like family member 20',
'ENSG00000250844' => 'ubiquitin specific peptidase 17-like family member 18',
'ENSG00000250913' => 'ubiquitin specific peptidase 17-like family member 23',
'ENSG00000251694' => 'ubiquitin specific peptidase 17-like family member 9, pseudogene',
'ENSG00000223443' => 'ubiquitin specific peptidase 17-like family member 2',
'ENSG00000226430' => 'ubiquitin specific peptidase 17-like family member 7',
'ENSG00000227551' => 'ubiquitin specific peptidase 17-like family member 12',
'ENSG00000232399' => 'ubiquitin specific peptidase 17-like family member 13',
'ENSG00000230549' => 'ubiquitin specific peptidase 17-like family member 1',
'ENSG00000236125' => 'ubiquitin specific peptidase 17-like family member 4',
'ENSG00000231396' => 'ubiquitin specific peptidase 17-like family member 10',
'ENSG00000233136' => 'ubiquitin specific peptidase 17-like family member 11',
'ENSG00000249482' => 'ubiquitin specific peptidase 17-like family member 14, pseudogene',
'ENSG00000225327' => 'ubiquitin specific peptidase 17-like family member 3',
'ENSG00000237038' => 'ubiquitin specific peptidase 17-like family member 8',
'ENSMUSG00000043073' => 'ubiquitin specific peptidase 17-like E',
'ENSMUSG00000062369' => 'ubiquitin specific peptidase 17-like B',
'ENSMUSG00000086229' => 'predicted gene 4887',
'ENSMUSG00000054568' => 'ubiquitin specific peptidase 17-like A'
)
$gene_name_arr = array(
'ENSG00000223569' => 'USP17L15',
'ENSG00000227140' => 'USP17L5',
'ENSG00000228856' => 'USP17L30',
'ENSG00000229579' => 'USP17L26',
'ENSG00000230430' => 'USP17L25',
'ENSG00000231051' => 'USP17L28',
'ENSG00000231637' => 'USP17L29',
'ENSG00000232264' => 'USP17L24',
'ENSG00000235780' => 'USP17L27',
'ENSG00000248920' => 'USP17L19',
'ENSG00000248933' => 'USP17L22',
'ENSG00000249104' => 'USP17L17',
'ENSG00000249811' => 'USP17L21',
'ENSG00000250231' => 'USP17L16P',
'ENSG00000250745' => 'USP17L20',
'ENSG00000250844' => 'USP17L18',
'ENSG00000250913' => 'USP17L23',
'ENSG00000251694' => 'USP17L9P',
'ENSG00000223443' => 'USP17L2',
'ENSG00000226430' => 'USP17L7',
'ENSG00000227551' => 'USP17L12',
'ENSG00000232399' => 'USP17L13',
'ENSG00000230549' => 'USP17L1P',
'ENSG00000236125' => 'USP17L4',
'ENSG00000231396' => 'USP17L10',
'ENSG00000233136' => 'USP17L11',
'ENSG00000249482' => 'USP17L14P',
'ENSG00000225327' => 'USP17L3',
'ENSG00000237038' => 'USP17L8',
'ENSMUSG00000043073' => 'Usp17le',
'ENSMUSG00000062369' => 'Usp17lb',
'ENSMUSG00000086229' => 'Gm4887',
'ENSMUSG00000054568' => 'Usp17la'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0001',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9234385',
'seq_end' => '9365080',
'region_length' => '130695',
'region_type' => 'CGP',
'el_id' => 'ENSG00000223569-ENSG00000223569'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0002',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '12132417',
'seq_end' => '12139077',
'region_length' => '6660',
'region_type' => 'CGP',
'el_id' => 'ENSG00000226430-ENSG00000223443'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0003',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9339403',
'seq_end' => '9345740',
'region_length' => '6337',
'region_type' => 'CGP',
'el_id' => 'ENSG00000227140-ENSG00000235780'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0004',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9220152',
'seq_end' => '9226847',
'region_length' => '6695',
'region_type' => 'CGP',
'el_id' => 'ENSG00000227551-ENSG00000232399'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0005',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9334658',
'seq_end' => '9340995',
'region_length' => '6337',
'region_type' => 'CGP',
'el_id' => 'ENSG00000229579-ENSG00000227140'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0006',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9329911',
'seq_end' => '9336609',
'region_length' => '6698',
'region_type' => 'CGP',
'el_id' => 'ENSG00000230430-ENSG00000229579'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0007',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '7332387',
'seq_end' => '7338707',
'region_length' => '6320',
'region_type' => 'CGP',
'el_id' => 'ENSG00000230549-ENSG00000236125'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0008',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9348893',
'seq_end' => '9355230',
'region_length' => '6337',
'region_type' => 'CGP',
'el_id' => 'ENSG00000231051-ENSG00000231637'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0009',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9210657',
'seq_end' => '9217356',
'region_length' => '6699',
'region_type' => 'CGP',
'el_id' => 'ENSG00000231396-ENSG00000233136'
)
),
(int) 9 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000A',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9353638',
'seq_end' => '9364721',
'region_length' => '11083',
'region_type' => 'CGP',
'el_id' => 'ENSG00000231637-ENSG00000228856'
)
),
(int) 10 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000B',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9325165',
'seq_end' => '9331862',
'region_length' => '6697',
'region_type' => 'CGP',
'el_id' => 'ENSG00000232264-ENSG00000230430'
)
),
(int) 11 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000C',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9224896',
'seq_end' => '9365080',
'region_length' => '140184',
'region_type' => 'CGP',
'el_id' => 'ENSG00000232399-ENSG00000223569'
)
),
(int) 12 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000D',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9215405',
'seq_end' => '9221744',
'region_length' => '6339',
'region_type' => 'CGP',
'el_id' => 'ENSG00000233136-ENSG00000227551'
)
),
(int) 13 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000E',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9344148',
'seq_end' => '9350485',
'region_length' => '6337',
'region_type' => 'CGP',
'el_id' => 'ENSG00000235780-ENSG00000231051'
)
),
(int) 14 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000F',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '7971661',
'seq_end' => '7977985',
'region_length' => '6324',
'region_type' => 'CGP',
'el_id' => 'ENSG00000237038-ENSG00000225327'
)
),
(int) 15 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000G',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9253378',
'seq_end' => '9260075',
'region_length' => '6697',
'region_type' => 'CGP',
'el_id' => 'ENSG00000248920-ENSG00000250745'
)
),
(int) 16 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000H',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9267619',
'seq_end' => '9272914',
'region_length' => '5295',
'region_type' => 'CGP',
'el_id' => 'ENSG00000248933-ENSG00000250913'
)
),
(int) 17 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000I',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9243879',
'seq_end' => '9250581',
'region_length' => '6702',
'region_type' => 'CGP',
'el_id' => 'ENSG00000249104-ENSG00000250844'
)
),
(int) 18 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000J',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9262872',
'seq_end' => '9269570',
'region_length' => '6698',
'region_type' => 'CGP',
'el_id' => 'ENSG00000249811-ENSG00000248933'
)
),
(int) 19 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000K',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9258124',
'seq_end' => '9264823',
'region_length' => '6699',
'region_type' => 'CGP',
'el_id' => 'ENSG00000250745-ENSG00000249811'
)
),
(int) 20 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000L',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9248630',
'seq_end' => '9255329',
'region_length' => '6699',
'region_type' => 'CGP',
'el_id' => 'ENSG00000250844-ENSG00000248920'
)
),
(int) 21 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000M',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9272364',
'seq_end' => '9327116',
'region_length' => '54752',
'region_type' => 'CGP',
'el_id' => 'ENSG00000250913-ENSG00000232264'
)
),
(int) 22 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000N',
'tax_id' => '10090',
'chromosome' => '7',
'seq_start' => '104768160',
'seq_end' => '104842603',
'region_length' => '74443',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000043073-ENSMUSG00000062369'
)
),
(int) 23 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000O',
'tax_id' => '10090',
'chromosome' => '7',
'seq_start' => '104840257',
'seq_end' => '104862667',
'region_length' => '22410',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000062369-ENSMUSG00000054568'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 8 => 'Brain',
(int) 13 => 'Breast',
(int) 18 => 'Colon',
(int) 22 => 'Heart',
(int) 25 => 'Kidney',
(int) 27 => 'Liver',
(int) 38 => 'Lung',
(int) 44 => 'Ovary',
(int) 56 => 'Placenta',
(int) 63 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 131
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000456464' => array(
'start' => '9234385',
'end' => '9235974',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L15-001'
),
'ENST00000614248' => array(
'start' => '9234385',
'end' => '9365080',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L15-201'
),
'ENST00000621432' => array(
'start' => '9234385',
'end' => '9236334',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L15-202'
),
'ENST00000507227' => array(
'start' => '9339403',
'end' => '9340995',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L5-001'
),
'ENST00000504104' => array(
'start' => '9363129',
'end' => '9364721',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L30-001'
),
'ENST00000509660' => array(
'start' => '9334658',
'end' => '9336250',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L26-001'
),
'ENST00000610514' => array(
'start' => '9334658',
'end' => '9336609',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L26-201'
),
'ENST00000509271' => array(
'start' => '9329911',
'end' => '9331503',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L25-001'
),
'ENST00000621472' => array(
'start' => '9329911',
'end' => '9331862',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L25-201'
),
'ENST00000504543' => array(
'start' => '9348893',
'end' => '9350485',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L28-001'
),
'ENST00000511681' => array(
'start' => '9353638',
'end' => '9355230',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L29-001'
),
'ENST00000504481' => array(
'start' => '9325165',
'end' => '9326757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L24-001'
),
'ENST00000622713' => array(
'start' => '9325165',
'end' => '9327116',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L24-201'
),
'ENST00000515574' => array(
'start' => '9344148',
'end' => '9345740',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L27-001'
),
'ENST00000515566' => array(
'start' => '9253378',
'end' => '9254970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L19-001'
),
'ENST00000615989' => array(
'start' => '9253378',
'end' => '9255329',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L19-201'
),
'ENST00000511280' => array(
'start' => '9267619',
'end' => '9269211',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L22-001'
),
'ENST00000622009' => array(
'start' => '9267619',
'end' => '9269570',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L22-201'
),
'ENST00000511568' => array(
'start' => '9243879',
'end' => '9245471',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L17-001'
),
'ENST00000614762' => array(
'start' => '9243879',
'end' => '9245830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L17-201'
),
'ENST00000506414' => array(
'start' => '9262872',
'end' => '9264464',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L21-001'
),
'ENST00000621388' => array(
'start' => '9262872',
'end' => '9264823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L21-201'
),
'ENST00000507155' => array(
'start' => '9239130',
'end' => '9240722',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'USP17L16P-001'
),
'ENST00000506151' => array(
'start' => '9258124',
'end' => '9259716',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L20-001'
),
'ENST00000613757' => array(
'start' => '9258124',
'end' => '9260075',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L20-201'
),
'ENST00000504209' => array(
'start' => '9248630',
'end' => '9250222',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L18-001'
),
'ENST00000619296' => array(
'start' => '9248630',
'end' => '9250581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L18-201'
),
'ENST00000506619' => array(
'start' => '9272364',
'end' => '9272914',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L23-001'
),
'ENST00000508843' => array(
'start' => '9358383',
'end' => '9359975',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'USP17L9P-001'
),
'ENST00000333796' => array(
'start' => '12137168',
'end' => '12139077',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L2-001'
),
'ENST00000530447' => array(
'start' => '12132417',
'end' => '12134444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L7-001'
),
'ENST00000415041' => array(
'start' => '9220152',
'end' => '9221744',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L12-001'
),
'ENST00000429667' => array(
'start' => '9224896',
'end' => '9226488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L13-001'
),
'ENST00000616303' => array(
'start' => '9224896',
'end' => '9226847',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L13-201'
),
'ENST00000529559' => array(
'start' => '7332387',
'end' => '7333979',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L1P-001'
),
'ENST00000526929' => array(
'start' => '7337115',
'end' => '7338707',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L4-001'
),
'ENST00000417945' => array(
'start' => '9210657',
'end' => '9212249',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L10-001'
),
'ENST00000421288' => array(
'start' => '9210657',
'end' => '9212608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L10-201'
),
'ENST00000457736' => array(
'start' => '9215405',
'end' => '9216997',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L11-001'
),
'ENST00000613973' => array(
'start' => '9215405',
'end' => '9217356',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L11-201'
),
'ENST00000504838' => array(
'start' => '9229641',
'end' => '9231233',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'USP17L14P-001'
),
'ENST00000530484' => array(
'start' => '7976393',
'end' => '7977985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L3-001'
),
'ENST00000527080' => array(
'start' => '7971661',
'end' => '7973253',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L8-001'
),
'ENST00000625190' => array(
'start' => '7971661',
'end' => '7977985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L8-201'
),
'ENSMUST00000053464' => array(
'start' => '104768160',
'end' => '104777470',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17le-201'
),
'ENSMUST00000076501' => array(
'start' => '104840312',
'end' => '104842504',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17lb-201'
),
'ENSMUST00000106814' => array(
'start' => '104840257',
'end' => '104842603',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17lb-202'
),
'ENSMUST00000122230' => array(
'start' => '104821204',
'end' => '104822256',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm4887-001'
),
'ENSMUST00000067695' => array(
'start' => '104857009',
'end' => '104862667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17la-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0001XF_0002' => array(
'genes_in_region' => array(
'ENSG00000223443' => array(
[maximum depth reached]
),
'ENSG00000226430' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Breast',
(int) 2 => 'Colon',
(int) 3 => 'Liver',
(int) 4 => 'Lung',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Bladder',
(int) 9 => 'Brain',
(int) 10 => 'Breast',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Ovary'
)
),
'CIL_0001XF_0007' => array(
'genes_in_region' => array(
'ENSG00000230549' => array(
[maximum depth reached]
),
'ENSG00000236125' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Bladder',
(int) 2 => 'Lung'
)
),
'CIL_0001XF_000C' => array(
'genes_in_region' => array(
'ENSG00000249482' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Liver',
(int) 3 => 'Ovary',
(int) 4 => 'Ovary'
)
),
'CIL_0001XF_000N' => array(
'genes_in_region' => array(
'ENSMUSG00000043073' => array(
[maximum depth reached]
),
'ENSMUSG00000062369' => array(
[maximum depth reached]
),
'ENSMUSG00000086229' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis'
)
),
'CIL_0001XF_000O' => array(
'genes_in_region' => array(
'ENSMUSG00000054568' => array(
[maximum depth reached]
),
'ENSMUSG00000062369' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Liver',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0003',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9339403',
'seq_end' => '9345740',
'region_length' => '6337',
'region_type' => 'CGP',
'el_id' => 'ENSG00000227140-ENSG00000235780'
)
)
$gene_el = array(
'ENST00000530447' => array(
'Bladder' => array(
'average_FPKM' => '0.366',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.226',
'stddev_FPKM' => '0.10'
),
'Breast' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.10'
),
'Colon' => array(
'average_FPKM' => '0.075',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.042',
'stddev_FPKM' => '0.02'
),
'Liver' => array(
'average_FPKM' => '0.051',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.145',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.015',
'stddev_FPKM' => '0.01'
)
)
)
$gene_key = 'ENSG00000226430'
$is_first = false
$tran_el = array(
'Bladder' => array(
'average_FPKM' => '0.366',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.226',
'stddev_FPKM' => '0.10'
),
'Breast' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.10'
),
'Colon' => array(
'average_FPKM' => '0.075',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.042',
'stddev_FPKM' => '0.02'
),
'Liver' => array(
'average_FPKM' => '0.051',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.145',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.015',
'stddev_FPKM' => '0.01'
)
)
$tran_key = 'ENST00000530447'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0001XF_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_000N' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_000O' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000223569' => 'ubiquitin specific peptidase 17-like family member 15',
'ENSG00000227140' => 'ubiquitin specific peptidase 17-like family member 5',
'ENSG00000228856' => 'ubiquitin specific peptidase 17-like family member 30',
'ENSG00000229579' => 'ubiquitin specific peptidase 17-like family member 26',
'ENSG00000230430' => 'ubiquitin specific peptidase 17-like family member 25',
'ENSG00000231051' => 'ubiquitin specific peptidase 17-like family member 28',
'ENSG00000231637' => 'ubiquitin specific peptidase 17-like family member 29',
'ENSG00000232264' => 'ubiquitin specific peptidase 17-like family member 24',
'ENSG00000235780' => 'ubiquitin specific peptidase 17-like family member 27',
'ENSG00000248920' => 'ubiquitin specific peptidase 17-like family member 19',
'ENSG00000248933' => 'ubiquitin specific peptidase 17-like family member 22',
'ENSG00000249104' => 'ubiquitin specific peptidase 17-like family member 17',
'ENSG00000249811' => 'ubiquitin specific peptidase 17-like family member 21',
'ENSG00000250231' => 'ubiquitin specific peptidase 17-like family member 16, pseudogene',
'ENSG00000250745' => 'ubiquitin specific peptidase 17-like family member 20',
'ENSG00000250844' => 'ubiquitin specific peptidase 17-like family member 18',
'ENSG00000250913' => 'ubiquitin specific peptidase 17-like family member 23',
'ENSG00000251694' => 'ubiquitin specific peptidase 17-like family member 9, pseudogene',
'ENSG00000223443' => 'ubiquitin specific peptidase 17-like family member 2',
'ENSG00000226430' => 'ubiquitin specific peptidase 17-like family member 7',
'ENSG00000227551' => 'ubiquitin specific peptidase 17-like family member 12',
'ENSG00000232399' => 'ubiquitin specific peptidase 17-like family member 13',
'ENSG00000230549' => 'ubiquitin specific peptidase 17-like family member 1',
'ENSG00000236125' => 'ubiquitin specific peptidase 17-like family member 4',
'ENSG00000231396' => 'ubiquitin specific peptidase 17-like family member 10',
'ENSG00000233136' => 'ubiquitin specific peptidase 17-like family member 11',
'ENSG00000249482' => 'ubiquitin specific peptidase 17-like family member 14, pseudogene',
'ENSG00000225327' => 'ubiquitin specific peptidase 17-like family member 3',
'ENSG00000237038' => 'ubiquitin specific peptidase 17-like family member 8',
'ENSMUSG00000043073' => 'ubiquitin specific peptidase 17-like E',
'ENSMUSG00000062369' => 'ubiquitin specific peptidase 17-like B',
'ENSMUSG00000086229' => 'predicted gene 4887',
'ENSMUSG00000054568' => 'ubiquitin specific peptidase 17-like A'
),
'gene_name_arr' => array(
'ENSG00000223569' => 'USP17L15',
'ENSG00000227140' => 'USP17L5',
'ENSG00000228856' => 'USP17L30',
'ENSG00000229579' => 'USP17L26',
'ENSG00000230430' => 'USP17L25',
'ENSG00000231051' => 'USP17L28',
'ENSG00000231637' => 'USP17L29',
'ENSG00000232264' => 'USP17L24',
'ENSG00000235780' => 'USP17L27',
'ENSG00000248920' => 'USP17L19',
'ENSG00000248933' => 'USP17L22',
'ENSG00000249104' => 'USP17L17',
'ENSG00000249811' => 'USP17L21',
'ENSG00000250231' => 'USP17L16P',
'ENSG00000250745' => 'USP17L20',
'ENSG00000250844' => 'USP17L18',
'ENSG00000250913' => 'USP17L23',
'ENSG00000251694' => 'USP17L9P',
'ENSG00000223443' => 'USP17L2',
'ENSG00000226430' => 'USP17L7',
'ENSG00000227551' => 'USP17L12',
'ENSG00000232399' => 'USP17L13',
'ENSG00000230549' => 'USP17L1P',
'ENSG00000236125' => 'USP17L4',
'ENSG00000231396' => 'USP17L10',
'ENSG00000233136' => 'USP17L11',
'ENSG00000249482' => 'USP17L14P',
'ENSG00000225327' => 'USP17L3',
'ENSG00000237038' => 'USP17L8',
'ENSMUSG00000043073' => 'Usp17le',
'ENSMUSG00000062369' => 'Usp17lb',
'ENSMUSG00000086229' => 'Gm4887',
'ENSMUSG00000054568' => 'Usp17la'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 9 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 10 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 11 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 12 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 13 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 14 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 15 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 16 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 17 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 18 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 19 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 20 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 21 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 22 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 23 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 8 => 'Brain',
(int) 13 => 'Breast',
(int) 18 => 'Colon',
(int) 22 => 'Heart',
(int) 25 => 'Kidney',
(int) 27 => 'Liver',
(int) 38 => 'Lung',
(int) 44 => 'Ovary',
(int) 56 => 'Placenta',
(int) 63 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 131,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000456464' => array(
'start' => '9234385',
'end' => '9235974',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L15-001'
),
'ENST00000614248' => array(
'start' => '9234385',
'end' => '9365080',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L15-201'
),
'ENST00000621432' => array(
'start' => '9234385',
'end' => '9236334',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L15-202'
),
'ENST00000507227' => array(
'start' => '9339403',
'end' => '9340995',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L5-001'
),
'ENST00000504104' => array(
'start' => '9363129',
'end' => '9364721',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L30-001'
),
'ENST00000509660' => array(
'start' => '9334658',
'end' => '9336250',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L26-001'
),
'ENST00000610514' => array(
'start' => '9334658',
'end' => '9336609',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L26-201'
),
'ENST00000509271' => array(
'start' => '9329911',
'end' => '9331503',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L25-001'
),
'ENST00000621472' => array(
'start' => '9329911',
'end' => '9331862',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L25-201'
),
'ENST00000504543' => array(
'start' => '9348893',
'end' => '9350485',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L28-001'
),
'ENST00000511681' => array(
'start' => '9353638',
'end' => '9355230',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L29-001'
),
'ENST00000504481' => array(
'start' => '9325165',
'end' => '9326757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L24-001'
),
'ENST00000622713' => array(
'start' => '9325165',
'end' => '9327116',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L24-201'
),
'ENST00000515574' => array(
'start' => '9344148',
'end' => '9345740',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L27-001'
),
'ENST00000515566' => array(
'start' => '9253378',
'end' => '9254970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L19-001'
),
'ENST00000615989' => array(
'start' => '9253378',
'end' => '9255329',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L19-201'
),
'ENST00000511280' => array(
'start' => '9267619',
'end' => '9269211',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L22-001'
),
'ENST00000622009' => array(
'start' => '9267619',
'end' => '9269570',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L22-201'
),
'ENST00000511568' => array(
'start' => '9243879',
'end' => '9245471',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L17-001'
),
'ENST00000614762' => array(
'start' => '9243879',
'end' => '9245830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L17-201'
),
'ENST00000506414' => array(
'start' => '9262872',
'end' => '9264464',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L21-001'
),
'ENST00000621388' => array(
'start' => '9262872',
'end' => '9264823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L21-201'
),
'ENST00000507155' => array(
'start' => '9239130',
'end' => '9240722',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'USP17L16P-001'
),
'ENST00000506151' => array(
'start' => '9258124',
'end' => '9259716',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L20-001'
),
'ENST00000613757' => array(
'start' => '9258124',
'end' => '9260075',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L20-201'
),
'ENST00000504209' => array(
'start' => '9248630',
'end' => '9250222',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L18-001'
),
'ENST00000619296' => array(
'start' => '9248630',
'end' => '9250581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L18-201'
),
'ENST00000506619' => array(
'start' => '9272364',
'end' => '9272914',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L23-001'
),
'ENST00000508843' => array(
'start' => '9358383',
'end' => '9359975',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'USP17L9P-001'
),
'ENST00000333796' => array(
'start' => '12137168',
'end' => '12139077',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L2-001'
),
'ENST00000530447' => array(
'start' => '12132417',
'end' => '12134444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L7-001'
),
'ENST00000415041' => array(
'start' => '9220152',
'end' => '9221744',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L12-001'
),
'ENST00000429667' => array(
'start' => '9224896',
'end' => '9226488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L13-001'
),
'ENST00000616303' => array(
'start' => '9224896',
'end' => '9226847',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L13-201'
),
'ENST00000529559' => array(
'start' => '7332387',
'end' => '7333979',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L1P-001'
),
'ENST00000526929' => array(
'start' => '7337115',
'end' => '7338707',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L4-001'
),
'ENST00000417945' => array(
'start' => '9210657',
'end' => '9212249',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L10-001'
),
'ENST00000421288' => array(
'start' => '9210657',
'end' => '9212608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L10-201'
),
'ENST00000457736' => array(
'start' => '9215405',
'end' => '9216997',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L11-001'
),
'ENST00000613973' => array(
'start' => '9215405',
'end' => '9217356',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L11-201'
),
'ENST00000504838' => array(
'start' => '9229641',
'end' => '9231233',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'USP17L14P-001'
),
'ENST00000530484' => array(
'start' => '7976393',
'end' => '7977985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L3-001'
),
'ENST00000527080' => array(
'start' => '7971661',
'end' => '7973253',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L8-001'
),
'ENST00000625190' => array(
'start' => '7971661',
'end' => '7977985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L8-201'
),
'ENSMUST00000053464' => array(
'start' => '104768160',
'end' => '104777470',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17le-201'
),
'ENSMUST00000076501' => array(
'start' => '104840312',
'end' => '104842504',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17lb-201'
),
'ENSMUST00000106814' => array(
'start' => '104840257',
'end' => '104842603',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17lb-202'
),
'ENSMUST00000122230' => array(
'start' => '104821204',
'end' => '104822256',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm4887-001'
),
'ENSMUST00000067695' => array(
'start' => '104857009',
'end' => '104862667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17la-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0001XF_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_000N' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0001XF_000O' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0001XF_0002' => array(
'genes_in_region' => array(
'ENSG00000223443' => array(
[maximum depth reached]
),
'ENSG00000226430' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Breast',
(int) 2 => 'Colon',
(int) 3 => 'Liver',
(int) 4 => 'Lung',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Bladder',
(int) 9 => 'Brain',
(int) 10 => 'Breast',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Ovary'
)
),
'CIL_0001XF_0007' => array(
'genes_in_region' => array(
'ENSG00000230549' => array(
[maximum depth reached]
),
'ENSG00000236125' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Bladder',
(int) 2 => 'Lung'
)
),
'CIL_0001XF_000C' => array(
'genes_in_region' => array(
'ENSG00000249482' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Liver',
(int) 3 => 'Ovary',
(int) 4 => 'Ovary'
)
),
'CIL_0001XF_000N' => array(
'genes_in_region' => array(
'ENSMUSG00000043073' => array(
[maximum depth reached]
),
'ENSMUSG00000062369' => array(
[maximum depth reached]
),
'ENSMUSG00000086229' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis'
)
),
'CIL_0001XF_000O' => array(
'genes_in_region' => array(
'ENSMUSG00000054568' => array(
[maximum depth reached]
),
'ENSMUSG00000062369' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Liver',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000223569' => 'ubiquitin specific peptidase 17-like family member 15',
'ENSG00000227140' => 'ubiquitin specific peptidase 17-like family member 5',
'ENSG00000228856' => 'ubiquitin specific peptidase 17-like family member 30',
'ENSG00000229579' => 'ubiquitin specific peptidase 17-like family member 26',
'ENSG00000230430' => 'ubiquitin specific peptidase 17-like family member 25',
'ENSG00000231051' => 'ubiquitin specific peptidase 17-like family member 28',
'ENSG00000231637' => 'ubiquitin specific peptidase 17-like family member 29',
'ENSG00000232264' => 'ubiquitin specific peptidase 17-like family member 24',
'ENSG00000235780' => 'ubiquitin specific peptidase 17-like family member 27',
'ENSG00000248920' => 'ubiquitin specific peptidase 17-like family member 19',
'ENSG00000248933' => 'ubiquitin specific peptidase 17-like family member 22',
'ENSG00000249104' => 'ubiquitin specific peptidase 17-like family member 17',
'ENSG00000249811' => 'ubiquitin specific peptidase 17-like family member 21',
'ENSG00000250231' => 'ubiquitin specific peptidase 17-like family member 16, pseudogene',
'ENSG00000250745' => 'ubiquitin specific peptidase 17-like family member 20',
'ENSG00000250844' => 'ubiquitin specific peptidase 17-like family member 18',
'ENSG00000250913' => 'ubiquitin specific peptidase 17-like family member 23',
'ENSG00000251694' => 'ubiquitin specific peptidase 17-like family member 9, pseudogene',
'ENSG00000223443' => 'ubiquitin specific peptidase 17-like family member 2',
'ENSG00000226430' => 'ubiquitin specific peptidase 17-like family member 7',
'ENSG00000227551' => 'ubiquitin specific peptidase 17-like family member 12',
'ENSG00000232399' => 'ubiquitin specific peptidase 17-like family member 13',
'ENSG00000230549' => 'ubiquitin specific peptidase 17-like family member 1',
'ENSG00000236125' => 'ubiquitin specific peptidase 17-like family member 4',
'ENSG00000231396' => 'ubiquitin specific peptidase 17-like family member 10',
'ENSG00000233136' => 'ubiquitin specific peptidase 17-like family member 11',
'ENSG00000249482' => 'ubiquitin specific peptidase 17-like family member 14, pseudogene',
'ENSG00000225327' => 'ubiquitin specific peptidase 17-like family member 3',
'ENSG00000237038' => 'ubiquitin specific peptidase 17-like family member 8',
'ENSMUSG00000043073' => 'ubiquitin specific peptidase 17-like E',
'ENSMUSG00000062369' => 'ubiquitin specific peptidase 17-like B',
'ENSMUSG00000086229' => 'predicted gene 4887',
'ENSMUSG00000054568' => 'ubiquitin specific peptidase 17-like A'
)
$gene_name_arr = array(
'ENSG00000223569' => 'USP17L15',
'ENSG00000227140' => 'USP17L5',
'ENSG00000228856' => 'USP17L30',
'ENSG00000229579' => 'USP17L26',
'ENSG00000230430' => 'USP17L25',
'ENSG00000231051' => 'USP17L28',
'ENSG00000231637' => 'USP17L29',
'ENSG00000232264' => 'USP17L24',
'ENSG00000235780' => 'USP17L27',
'ENSG00000248920' => 'USP17L19',
'ENSG00000248933' => 'USP17L22',
'ENSG00000249104' => 'USP17L17',
'ENSG00000249811' => 'USP17L21',
'ENSG00000250231' => 'USP17L16P',
'ENSG00000250745' => 'USP17L20',
'ENSG00000250844' => 'USP17L18',
'ENSG00000250913' => 'USP17L23',
'ENSG00000251694' => 'USP17L9P',
'ENSG00000223443' => 'USP17L2',
'ENSG00000226430' => 'USP17L7',
'ENSG00000227551' => 'USP17L12',
'ENSG00000232399' => 'USP17L13',
'ENSG00000230549' => 'USP17L1P',
'ENSG00000236125' => 'USP17L4',
'ENSG00000231396' => 'USP17L10',
'ENSG00000233136' => 'USP17L11',
'ENSG00000249482' => 'USP17L14P',
'ENSG00000225327' => 'USP17L3',
'ENSG00000237038' => 'USP17L8',
'ENSMUSG00000043073' => 'Usp17le',
'ENSMUSG00000062369' => 'Usp17lb',
'ENSMUSG00000086229' => 'Gm4887',
'ENSMUSG00000054568' => 'Usp17la'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0001',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9234385',
'seq_end' => '9365080',
'region_length' => '130695',
'region_type' => 'CGP',
'el_id' => 'ENSG00000223569-ENSG00000223569'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0002',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '12132417',
'seq_end' => '12139077',
'region_length' => '6660',
'region_type' => 'CGP',
'el_id' => 'ENSG00000226430-ENSG00000223443'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0003',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9339403',
'seq_end' => '9345740',
'region_length' => '6337',
'region_type' => 'CGP',
'el_id' => 'ENSG00000227140-ENSG00000235780'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0004',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9220152',
'seq_end' => '9226847',
'region_length' => '6695',
'region_type' => 'CGP',
'el_id' => 'ENSG00000227551-ENSG00000232399'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0005',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9334658',
'seq_end' => '9340995',
'region_length' => '6337',
'region_type' => 'CGP',
'el_id' => 'ENSG00000229579-ENSG00000227140'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0006',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9329911',
'seq_end' => '9336609',
'region_length' => '6698',
'region_type' => 'CGP',
'el_id' => 'ENSG00000230430-ENSG00000229579'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0007',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '7332387',
'seq_end' => '7338707',
'region_length' => '6320',
'region_type' => 'CGP',
'el_id' => 'ENSG00000230549-ENSG00000236125'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0008',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9348893',
'seq_end' => '9355230',
'region_length' => '6337',
'region_type' => 'CGP',
'el_id' => 'ENSG00000231051-ENSG00000231637'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0009',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9210657',
'seq_end' => '9217356',
'region_length' => '6699',
'region_type' => 'CGP',
'el_id' => 'ENSG00000231396-ENSG00000233136'
)
),
(int) 9 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000A',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9353638',
'seq_end' => '9364721',
'region_length' => '11083',
'region_type' => 'CGP',
'el_id' => 'ENSG00000231637-ENSG00000228856'
)
),
(int) 10 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000B',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9325165',
'seq_end' => '9331862',
'region_length' => '6697',
'region_type' => 'CGP',
'el_id' => 'ENSG00000232264-ENSG00000230430'
)
),
(int) 11 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000C',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9224896',
'seq_end' => '9365080',
'region_length' => '140184',
'region_type' => 'CGP',
'el_id' => 'ENSG00000232399-ENSG00000223569'
)
),
(int) 12 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000D',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9215405',
'seq_end' => '9221744',
'region_length' => '6339',
'region_type' => 'CGP',
'el_id' => 'ENSG00000233136-ENSG00000227551'
)
),
(int) 13 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000E',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9344148',
'seq_end' => '9350485',
'region_length' => '6337',
'region_type' => 'CGP',
'el_id' => 'ENSG00000235780-ENSG00000231051'
)
),
(int) 14 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000F',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '7971661',
'seq_end' => '7977985',
'region_length' => '6324',
'region_type' => 'CGP',
'el_id' => 'ENSG00000237038-ENSG00000225327'
)
),
(int) 15 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000G',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9253378',
'seq_end' => '9260075',
'region_length' => '6697',
'region_type' => 'CGP',
'el_id' => 'ENSG00000248920-ENSG00000250745'
)
),
(int) 16 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000H',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9267619',
'seq_end' => '9272914',
'region_length' => '5295',
'region_type' => 'CGP',
'el_id' => 'ENSG00000248933-ENSG00000250913'
)
),
(int) 17 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000I',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9243879',
'seq_end' => '9250581',
'region_length' => '6702',
'region_type' => 'CGP',
'el_id' => 'ENSG00000249104-ENSG00000250844'
)
),
(int) 18 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000J',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9262872',
'seq_end' => '9269570',
'region_length' => '6698',
'region_type' => 'CGP',
'el_id' => 'ENSG00000249811-ENSG00000248933'
)
),
(int) 19 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000K',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9258124',
'seq_end' => '9264823',
'region_length' => '6699',
'region_type' => 'CGP',
'el_id' => 'ENSG00000250745-ENSG00000249811'
)
),
(int) 20 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000L',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9248630',
'seq_end' => '9255329',
'region_length' => '6699',
'region_type' => 'CGP',
'el_id' => 'ENSG00000250844-ENSG00000248920'
)
),
(int) 21 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000M',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9272364',
'seq_end' => '9327116',
'region_length' => '54752',
'region_type' => 'CGP',
'el_id' => 'ENSG00000250913-ENSG00000232264'
)
),
(int) 22 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000N',
'tax_id' => '10090',
'chromosome' => '7',
'seq_start' => '104768160',
'seq_end' => '104842603',
'region_length' => '74443',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000043073-ENSMUSG00000062369'
)
),
(int) 23 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_000O',
'tax_id' => '10090',
'chromosome' => '7',
'seq_start' => '104840257',
'seq_end' => '104862667',
'region_length' => '22410',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000062369-ENSMUSG00000054568'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 8 => 'Brain',
(int) 13 => 'Breast',
(int) 18 => 'Colon',
(int) 22 => 'Heart',
(int) 25 => 'Kidney',
(int) 27 => 'Liver',
(int) 38 => 'Lung',
(int) 44 => 'Ovary',
(int) 56 => 'Placenta',
(int) 63 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 131
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000456464' => array(
'start' => '9234385',
'end' => '9235974',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L15-001'
),
'ENST00000614248' => array(
'start' => '9234385',
'end' => '9365080',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L15-201'
),
'ENST00000621432' => array(
'start' => '9234385',
'end' => '9236334',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L15-202'
),
'ENST00000507227' => array(
'start' => '9339403',
'end' => '9340995',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L5-001'
),
'ENST00000504104' => array(
'start' => '9363129',
'end' => '9364721',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L30-001'
),
'ENST00000509660' => array(
'start' => '9334658',
'end' => '9336250',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L26-001'
),
'ENST00000610514' => array(
'start' => '9334658',
'end' => '9336609',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L26-201'
),
'ENST00000509271' => array(
'start' => '9329911',
'end' => '9331503',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L25-001'
),
'ENST00000621472' => array(
'start' => '9329911',
'end' => '9331862',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L25-201'
),
'ENST00000504543' => array(
'start' => '9348893',
'end' => '9350485',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L28-001'
),
'ENST00000511681' => array(
'start' => '9353638',
'end' => '9355230',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L29-001'
),
'ENST00000504481' => array(
'start' => '9325165',
'end' => '9326757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L24-001'
),
'ENST00000622713' => array(
'start' => '9325165',
'end' => '9327116',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L24-201'
),
'ENST00000515574' => array(
'start' => '9344148',
'end' => '9345740',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L27-001'
),
'ENST00000515566' => array(
'start' => '9253378',
'end' => '9254970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L19-001'
),
'ENST00000615989' => array(
'start' => '9253378',
'end' => '9255329',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L19-201'
),
'ENST00000511280' => array(
'start' => '9267619',
'end' => '9269211',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L22-001'
),
'ENST00000622009' => array(
'start' => '9267619',
'end' => '9269570',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L22-201'
),
'ENST00000511568' => array(
'start' => '9243879',
'end' => '9245471',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L17-001'
),
'ENST00000614762' => array(
'start' => '9243879',
'end' => '9245830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L17-201'
),
'ENST00000506414' => array(
'start' => '9262872',
'end' => '9264464',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L21-001'
),
'ENST00000621388' => array(
'start' => '9262872',
'end' => '9264823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L21-201'
),
'ENST00000507155' => array(
'start' => '9239130',
'end' => '9240722',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'USP17L16P-001'
),
'ENST00000506151' => array(
'start' => '9258124',
'end' => '9259716',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L20-001'
),
'ENST00000613757' => array(
'start' => '9258124',
'end' => '9260075',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L20-201'
),
'ENST00000504209' => array(
'start' => '9248630',
'end' => '9250222',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L18-001'
),
'ENST00000619296' => array(
'start' => '9248630',
'end' => '9250581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L18-201'
),
'ENST00000506619' => array(
'start' => '9272364',
'end' => '9272914',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L23-001'
),
'ENST00000508843' => array(
'start' => '9358383',
'end' => '9359975',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'USP17L9P-001'
),
'ENST00000333796' => array(
'start' => '12137168',
'end' => '12139077',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L2-001'
),
'ENST00000530447' => array(
'start' => '12132417',
'end' => '12134444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L7-001'
),
'ENST00000415041' => array(
'start' => '9220152',
'end' => '9221744',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L12-001'
),
'ENST00000429667' => array(
'start' => '9224896',
'end' => '9226488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L13-001'
),
'ENST00000616303' => array(
'start' => '9224896',
'end' => '9226847',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L13-201'
),
'ENST00000529559' => array(
'start' => '7332387',
'end' => '7333979',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L1P-001'
),
'ENST00000526929' => array(
'start' => '7337115',
'end' => '7338707',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L4-001'
),
'ENST00000417945' => array(
'start' => '9210657',
'end' => '9212249',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L10-001'
),
'ENST00000421288' => array(
'start' => '9210657',
'end' => '9212608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L10-201'
),
'ENST00000457736' => array(
'start' => '9215405',
'end' => '9216997',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L11-001'
),
'ENST00000613973' => array(
'start' => '9215405',
'end' => '9217356',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L11-201'
),
'ENST00000504838' => array(
'start' => '9229641',
'end' => '9231233',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'USP17L14P-001'
),
'ENST00000530484' => array(
'start' => '7976393',
'end' => '7977985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L3-001'
),
'ENST00000527080' => array(
'start' => '7971661',
'end' => '7973253',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L8-001'
),
'ENST00000625190' => array(
'start' => '7971661',
'end' => '7977985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP17L8-201'
),
'ENSMUST00000053464' => array(
'start' => '104768160',
'end' => '104777470',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17le-201'
),
'ENSMUST00000076501' => array(
'start' => '104840312',
'end' => '104842504',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17lb-201'
),
'ENSMUST00000106814' => array(
'start' => '104840257',
'end' => '104842603',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17lb-202'
),
'ENSMUST00000122230' => array(
'start' => '104821204',
'end' => '104822256',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm4887-001'
),
'ENSMUST00000067695' => array(
'start' => '104857009',
'end' => '104862667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp17la-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0001XF_0002' => array(
'genes_in_region' => array(
'ENSG00000223443' => array(
[maximum depth reached]
),
'ENSG00000226430' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Breast',
(int) 2 => 'Colon',
(int) 3 => 'Liver',
(int) 4 => 'Lung',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Bladder',
(int) 9 => 'Brain',
(int) 10 => 'Breast',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Ovary'
)
),
'CIL_0001XF_0007' => array(
'genes_in_region' => array(
'ENSG00000230549' => array(
[maximum depth reached]
),
'ENSG00000236125' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Bladder',
(int) 2 => 'Lung'
)
),
'CIL_0001XF_000C' => array(
'genes_in_region' => array(
'ENSG00000249482' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Liver',
(int) 3 => 'Ovary',
(int) 4 => 'Ovary'
)
),
'CIL_0001XF_000N' => array(
'genes_in_region' => array(
'ENSMUSG00000043073' => array(
[maximum depth reached]
),
'ENSMUSG00000062369' => array(
[maximum depth reached]
),
'ENSMUSG00000086229' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis'
)
),
'CIL_0001XF_000O' => array(
'genes_in_region' => array(
'ENSMUSG00000054568' => array(
[maximum depth reached]
),
'ENSMUSG00000062369' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Liver',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0001XF_0003',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '9339403',
'seq_end' => '9345740',
'region_length' => '6337',
'region_type' => 'CGP',
'el_id' => 'ENSG00000227140-ENSG00000235780'
)
)
$gene_el = array(
'ENST00000530447' => array(
'Bladder' => array(
'average_FPKM' => '0.366',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.226',
'stddev_FPKM' => '0.10'
),
'Breast' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.10'
),
'Colon' => array(
'average_FPKM' => '0.075',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.042',
'stddev_FPKM' => '0.02'
),
'Liver' => array(
'average_FPKM' => '0.051',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.145',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.015',
'stddev_FPKM' => '0.01'
)
)
)
$gene_key = 'ENSG00000226430'
$is_first = false
$tran_el = array(
'Bladder' => array(
'average_FPKM' => '0.366',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.226',
'stddev_FPKM' => '0.10'
),
'Breast' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.10'
),
'Colon' => array(
'average_FPKM' => '0.075',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.042',
'stddev_FPKM' => '0.02'
),
'Liver' => array(
'average_FPKM' => '0.051',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.145',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.015',
'stddev_FPKM' => '0.01'
)
)
$tran_key = 'ENST00000530447'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(USP17L2)