C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002BU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000075345-ENSDARG00000054963 CGP 7955 3:29002294-29020759
GeneTranscriptPositionBiotype
ENSDARG00000054950 (fam86a)
family with sequence similarity 86, member A 		ENSDART00000138648 (fam86a-002) 29020729-29022267 retained_intron
ENSDART00000138840 (fam86a-001) 29020729-29023875 protein_coding
ENSDARG00000054963 (alg1)
asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase) 		ENSDART00000077235 (alg1-001) 29011402-29020759 protein_coding
ENSDART00000144495 (alg1-002) 29012295-29017201 processed_transcript
ENSDARG00000075345 (C3H16orf89)
chromosome 16 open reading frame 89 		ENSDART00000114319 (C3H16orf89-001) 29002294-29008314 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002BU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051669-ENSMUSG00000039427 CGP 10090 16:5211828-5244912
GeneTranscriptPositionBiotype
ENSMUSG00000022544 (Fam86)
family with sequence similarity 86 		ENSMUST00000064635 (Fam86-001) 5244152-5255983 protein_coding
ENSMUST00000129729 (Fam86-004) 5247387-5248870 retained_intron
ENSMUST00000132225 (Fam86-002) 5244879-5255941 retained_intron
ENSMUST00000139584 (Fam86-003) 5247375-5255956 protein_coding
ENSMUST00000140718 (Fam86-005) 5249075-5255929 retained_intron
ENSMUSG00000051669 (AU021092)
expressed sequence AU021092 		ENSMUST00000050160 (AU021092-001) 5211828-5222299 protein_coding
ENSMUSG00000095347 (Gm26095)
predicted gene, 26095 		ENSMUST00000179270 (Gm26095-201) 5227920-5228029 miRNA
ENSMUSG00000096398 (Gm23689)
predicted gene, 23689 		ENSMUST00000180354 (Gm23689-201) 5223364-5223473 miRNA
ENSMUSG00000098675 (Mir6364)
microRNA 6364 		ENSMUST00000183396 (Mir6364-201) 5215789-5215874 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002BU_0001ENSDARG00000054950ENSDART00000138648ENSDART00000138840ENSDARG00000054963ENSDART00000077235ENSDART00000144495ENSDARG00000075345ENSDART00000114319CIL_0002BU_0002ENSMUSG00000022544ENSMUST00000064635ENSMUST00000129729ENSMUST00000132225ENSMUST00000139584ENSMUST00000140718ENSMUSG00000051669ENSMUST00000050160ENSMUSG00000095347ENSMUST00000179270ENSMUSG00000096398ENSMUST00000180354ENSMUSG00000098675ENSMUST00000183396
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002BU_0001ENSDARG00000054950ENSDART00000138648ENSDART00000138840ENSDARG00000054963ENSDART00000077235ENSDART00000144495ENSDARG00000075345ENSDART00000114319CIL_0002BU_0002ENSMUSG00000022544ENSMUST00000064635ENSMUST00000139584ENSMUSG00000051669ENSMUST00000050160ENSMUSG00000095347ENSMUST00000179270ENSMUSG00000096398ENSMUST00000180354ENSMUSG00000098675ENSMUST00000183396
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000054950 ENSDART00000138648 N/A N/A N/A 0.631±0.00 N/A N/A 0.690±0.59 N/A N/A N/A 0.298±0.00 N/A N/A N/A
ENSDART00000138840 N/A N/A N/A 2.470±0.77 N/A N/A 2.405±1.38 7.951±5.63 0.679±0.00 N/A 0.781±0.00 N/A N/A N/A
ENSDARG00000054963 ENSDART00000077235 N/A N/A N/A 6.198±4.26 N/A N/A 1.780±0.17 20.718±0.00 1.465±0.00 N/A 0.930±0.00 N/A N/A N/A
ENSDART00000144495 N/A N/A N/A 4.539±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000075345 ENSDART00000114319 N/A N/A N/A 9.706±6.38 N/A N/A 0.045±0.00 0.379±0.08 N/A N/A 0.127±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022544 ENSMUST00000064635 15.217±2.14 24.914±4.22 15.098±0.64 4.583±1.25 17.486±2.78 14.563±1.22 6.953±1.21 19.560±1.74 6.693±1.97 15.415±0.82 3.585±0.23 13.782±5.68 10.046±1.97 6.527±0.27
ENSMUST00000129729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139584 10.962±0.84 23.479±0.00 N/A N/A N/A 11.989±0.90 N/A N/A 11.497±0.00 N/A N/A 22.398±4.20 N/A 13.002±1.44
ENSMUST00000140718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051669 ENSMUST00000050160 8.909±4.66 13.584±1.34 4.394±0.48 3.349±2.02 1.347±0.39 1.346±0.13 4.139±0.69 16.671±2.59 1.076±0.43 60.370±3.41 0.541±0.17 34.751±9.06 4.920±6.02 6.881±2.83
ENSMUSG00000095347 ENSMUST00000179270 N/A N/A N/A 0.886±0.00 N/A N/A N/A N/A 1.786±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000096398 ENSMUST00000180354 N/A N/A 2.171±0.00 0.886±0.00 N/A N/A N/A N/A 1.786±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000098675 ENSMUST00000183396 11993.500±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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