C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002CU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196335-ENSG00000122585 CGP 9606 7:23710167-24291865
GeneTranscriptPositionBiotype
ENSG00000122585 (NPY)
neuropeptide Y 		ENST00000242152 (NPY-001) 24284163-24291865 protein_coding
ENST00000405982 (NPY-002) 24285107-24291824 protein_coding
ENST00000407573 (NPY-003) 24284188-24291808 protein_coding
ENSG00000196335 (STK31)
serine/threonine kinase 31 		ENST00000354639 (STK31-002) 23710326-23832507 protein_coding
ENST00000355870 (STK31-001) 23710167-23832513 protein_coding
ENST00000405627 (STK31-004) 23722109-23832513 processed_transcript
ENST00000422637 (STK31-008) 23710203-23735607 protein_coding
ENST00000433467 (STK31-011) 23710275-23832449 protein_coding
ENST00000444333 (STK31-012) 23710378-23729116 protein_coding
ENST00000456014 (STK31-007) 23710255-23735628 protein_coding
ENST00000461866 (STK31-009) 23710312-23727610 retained_intron
ENST00000476399 (STK31-003) 23710260-23781520 retained_intron
ENST00000478321 (STK31-010) 23752803-23772274 processed_transcript
ENST00000528479 (STK31-013) 23722760-23735660 processed_transcript
ENST00000529549 (STK31-014) 23722760-23754327 processed_transcript
ENST00000531170 (STK31-006) 23710327-23717527 protein_coding
ENSG00000227930 (AC009508.1)
 ENST00000412828 (AC009508.1-001) 23891704-23897335 lincRNA
ENSG00000228944 (AC004485.3)
 ENST00000439839 (AC004485.3-001) 24196662-24255719 antisense
ENSG00000231328 (TPT1P7)
tumor protein, translationally-controlled 1 pseudogene 7 		ENST00000458300 (TPT1P7-001) 23811144-23811660 processed_pseudogene
ENSG00000234800 (PCMTD1P3)
protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 3 		ENST00000451824 (PCMTD1P3-001) 23721311-23721782 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0002CU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023403-ENSMUSG00000029819 CGP 10090 6:49395604-49829507
GeneTranscriptPositionBiotype
ENSMUSG00000023403 (Stk31)
serine threonine kinase 31 		ENSMUST00000024171 (Stk31-001) 49395604-49469501 protein_coding
ENSMUST00000163954 (Stk31-003) 49395635-49469352 protein_coding
ENSMUST00000167846 (Stk31-002) 49438564-49469500 protein_coding
ENSMUST00000172459 (Stk31-004) 49395635-49469352 protein_coding
ENSMUSG00000029819 (Npy)
neuropeptide Y 		ENSMUST00000031843 (Npy-001) 49822710-49829507 protein_coding
ENSMUSG00000090624 (Gm17060)
predicted gene 17060 		ENSMUST00000172394 (Gm17060-001) 49424061-49424884 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CU_0001ENSG00000122585ENST00000242152ENST00000405982ENST00000407573ENSG00000196335ENST00000354639ENST00000355870ENST00000405627ENST00000422637ENST00000433467ENST00000444333ENST00000456014ENST00000461866ENST00000476399ENST00000478321ENST00000528479ENST00000529549ENST00000531170ENSG00000227930ENST00000412828ENSG00000228944ENST00000439839ENSG00000231328ENST00000458300ENSG00000234800ENST00000451824CIL_0002CU_0002ENSMUSG00000023403ENSMUST00000024171ENSMUST00000163954ENSMUST00000167846ENSMUST00000172459ENSMUSG00000029819ENSMUST00000031843ENSMUSG00000090624ENSMUST00000172394
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CU_0001ENSG00000122585ENST00000242152ENST00000405982ENSG00000196335ENST00000354639ENST00000355870ENST00000405627ENST00000433467ENST00000456014ENST00000476399ENST00000478321ENST00000528479ENST00000529549ENST00000531170ENSG00000227930ENST00000412828ENSG00000228944ENST00000439839ENSG00000231328ENST00000458300ENSG00000234800ENST00000451824CIL_0002CU_0002ENSMUSG00000023403ENSMUST00000024171ENSMUST00000163954ENSMUST00000167846ENSMUST00000172459ENSMUSG00000029819ENSMUST00000031843ENSMUSG00000090624ENSMUST00000172394
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122585 ENST00000242152 N/A 0.190±0.00 N/A 23.801±4.84 N/A 1.048±0.00 N/A N/A N/A N/A N/A N/A N/A 0.442±0.36
ENST00000405982 N/A N/A N/A N/A N/A 0.332±0.00 N/A N/A N/A N/A N/A N/A 0.132±0.01 N/A
ENST00000407573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196335 ENST00000354639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A N/A
ENST00000355870 N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A 0.055±0.01 N/A 32.415±6.76
ENST00000405627 0.017±0.00 0.125±0.00 N/A 0.090±0.00 0.016±0.01 0.013±0.00 0.030±0.00 0.077±0.00 N/A 0.019±0.00 N/A 0.187±0.16 N/A N/A
ENST00000422637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433467 N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 0.292±0.00 N/A 0.082±0.00 0.087±0.00 N/A
ENST00000444333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456014 N/A N/A N/A N/A 0.515±0.00 N/A N/A N/A N/A 0.625±0.00 N/A N/A N/A N/A
ENST00000461866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476399 N/A N/A N/A N/A 0.008±0.00 0.011±0.00 N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A
ENST00000478321 0.096±0.00 N/A N/A 0.200±0.05 0.033±0.00 N/A 0.064±0.00 0.072±0.00 0.096±0.00 N/A N/A N/A N/A N/A
ENST00000528479 N/A N/A N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000529549 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.602±0.00 N/A N/A
ENST00000531170 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.647±0.00 N/A N/A N/A N/A
ENSG00000227930 ENST00000412828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00
ENSG00000228944 ENST00000439839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.138±0.00
ENSG00000231328 ENST00000458300 N/A 0.087±0.00 N/A N/A N/A 0.020±0.00 N/A N/A N/A 0.078±0.00 0.112±0.00 0.204±0.00 N/A N/A
ENSG00000234800 ENST00000451824 N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023403 ENSMUST00000024171 N/A N/A 0.002±0.00 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.780±1.03 5.377±3.35
ENSMUST00000163954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.09 3.886±0.00 10.558±0.00
ENSMUST00000167846 N/A N/A N/A 0.019±0.00 0.062±0.01 N/A 0.115±0.00 N/A 0.041±0.03 N/A N/A 0.196±0.11 1.607±0.68 3.131±0.60
ENSMUST00000172459 N/A N/A 0.003±0.00 0.012±0.00 N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 7.216±0.00
ENSMUSG00000029819 ENSMUST00000031843 0.615±0.46 334.542±104.31 1.792±0.16 37.683±10.53 0.276±0.11 6.332±1.40 2.510±0.85 89.259±5.26 0.160±0.21 2.229±1.25 N/A 0.426±0.40 6.171±11.52 N/A
ENSMUSG00000090624 ENSMUST00000172394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.228±0.00 0.240±0.09 0.923±0.32

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