C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 17060
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172394 Gm17060-001 ENSMUSG00000090624 10090 - 6:49424061-49424884 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENSMUST00000172394
Transcript ID Ovary Placenta Testis
ENSMUST00000172394 0.228±0.00 0.240±0.09 0.923±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CV CIL_0002CV_0002 CGP 6:49367739-49469501
CIL_0002CU CIL_0002CU_0002 CGP 6:49395604-49829507

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290855 CLEC2D-001 protein_coding Homo_sapiens 0 704
ENST00000296930 NPM1-001 protein_coding Homo_sapiens 0 828
ENST00000351986 NPM1-002 protein_coding Homo_sapiens 0 503
ENST00000393820 NPM1-003 protein_coding Homo_sapiens 0 682
ENST00000396690 CLEC2D-001 processed_pseudogene Homo_sapiens 0 697
ENST00000399556 NPM1P46-001 processed_pseudogene Homo_sapiens 0 704
ENST00000403105 NPM1P37-001 processed_pseudogene Homo_sapiens 0 719
ENST00000415681 NPM1P36-001 processed_pseudogene Homo_sapiens 0 556
ENST00000423757 NPM1P12-001 processed_pseudogene Homo_sapiens 0 664
ENST00000425092 NPM1P30-001 processed_pseudogene Homo_sapiens 0 191
ENST00000426339 NPM1P26-001 processed_pseudogene Homo_sapiens 0 551
ENST00000427761 NPM1P22-001 processed_pseudogene Homo_sapiens 0 638
ENST00000428039 NPM1P24-001 processed_pseudogene Homo_sapiens 0 638
ENST00000434232 NPM1P18-001 processed_pseudogene Homo_sapiens 0 542
ENST00000436002 NPM1P48-001 processed_pseudogene Homo_sapiens 0 660
ENST00000438918 NPM1P33-001 processed_pseudogene Homo_sapiens 0 712
ENST00000443470 NPM1P51-001 processed_pseudogene Homo_sapiens 0 569
ENST00000449818 NPM1P39-001 processed_pseudogene Homo_sapiens 0 817
ENST00000450070 NPM1P19-001 processed_pseudogene Homo_sapiens 0 420
ENST00000458237 NPM1P8-001 processed_pseudogene Homo_sapiens 0 721
ENST00000502784 NPM1P27-001 processed_pseudogene Homo_sapiens 0 778
ENST00000513394 NPM1P21-001 processed_pseudogene Homo_sapiens 0 584
ENST00000517671 NPM1-004 protein_coding Homo_sapiens 0 828
ENST00000518587 NPM1-008 retained_intron Homo_sapiens 0 438
ENST00000519955 NPM1-011 retained_intron Homo_sapiens 0 191
ENST00000521088 NPM1P6-001 processed_pseudogene Homo_sapiens 0 754
ENST00000521260 NPM1-009 retained_intron Homo_sapiens 4e-19 99
ENST00000521672 NPM1-005 protein_coding Homo_sapiens 0 407
ENST00000524204 NPM1-012 retained_intron Homo_sapiens 4e-35 152
ENST00000533043 NPM1P35-001 processed_pseudogene Homo_sapiens 0 593
ENST00000557228 NPM1P5-001 processed_pseudogene Homo_sapiens 0 664
ENST00000558669 NPM1P43-001 processed_pseudogene Homo_sapiens 0 211
ENST00000560329 NPM1P42-001 processed_pseudogene Homo_sapiens 0 621
ENST00000564888 RP11-382N13.3-001 processed_pseudogene Homo_sapiens 0 327
ENST00000588959 RP11-188I24.1-001 processed_pseudogene Homo_sapiens 0 219

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