C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002CX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165309-ENSG00000148450 CGP 9606 10:22928024-23122013
GeneTranscriptPositionBiotype
ENSG00000148450 (MSRB2)
methionine sulfoxide reductase B2 		ENST00000376510 (MSRB2-001) 23095506-23122013 protein_coding
ENST00000468633 (MSRB2-003) 23119144-23120893 processed_transcript
ENST00000472663 (MSRB2-002) 23104144-23120954 nonsense_mediated_decay
ENSG00000165309 (ARMC3)
armadillo repeat containing 3 		ENST00000298032 (ARMC3-001) 22928024-23037587 protein_coding
ENST00000376528 (ARMC3-201) 22928024-23038523 protein_coding
ENST00000409049 (ARMC3-010) 22928064-23014489 protein_coding
ENST00000409983 (ARMC3-009) 22928037-23037589 protein_coding
ENST00000447081 (ARMC3-012) 22928085-22961966 protein_coding
ENST00000464017 (ARMC3-006) 22955196-22961727 processed_transcript
ENST00000465729 (ARMC3-008) 22931996-22946683 retained_intron
ENST00000468003 (ARMC3-014) 22928085-22968342 processed_transcript
ENST00000473919 (ARMC3-005) 23030631-23031195 retained_intron
ENST00000483596 (ARMC3-013) 22928086-22962067 processed_transcript
ENST00000484642 (ARMC3-007) 22928077-22981608 processed_transcript
ENST00000491803 (ARMC3-004) 23006735-23008374 processed_transcript
ENST00000496741 (ARMC3-011) 22928077-22981453 processed_transcript
ENSG00000221221 (AL139815.1)
 ENST00000408294 (AL139815.1-201) 23074383-23074478 miRNA
ENSG00000223131 (RNA5SP304)
RNA, 5S ribosomal pseudogene 304 		ENST00000411199 (RNA5SP304-201) 22997255-22997358 rRNA
CIL_0002CX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037683-ENSMUSG00000023094 CGP 10090 2:19199302-19394976
GeneTranscriptPositionBiotype
ENSMUSG00000023094 (Msrb2)
methionine sulfoxide reductase B2 		ENSMUST00000023856 (Msrb2-001) 19371636-19394976 protein_coding
ENSMUST00000126894 (Msrb2-002) 19371668-19393320 processed_transcript
ENSMUST00000137812 (Msrb2-004) 19371440-19383284 processed_transcript
ENSMUST00000153289 (Msrb2-003) 19371841-19394264 processed_transcript
ENSMUSG00000037683 (Armc3)
armadillo repeat containing 3 		ENSMUST00000049255 (Armc3-002) 19199302-19310241 protein_coding
ENSMUST00000114640 (Armc3-001) 19199302-19310241 protein_coding
ENSMUSG00000087674 (4930447M23Rik)
RIKEN cDNA 4930447M23 gene 		ENSMUST00000136456 (4930447M23Rik-003) 19344937-19348936 lincRNA
ENSMUST00000141289 (4930447M23Rik-001) 19344317-19349202 lincRNA
ENSMUST00000150514 (4930447M23Rik-002) 19344838-19351050 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CX_0001ENSG00000148450ENST00000376510ENST00000468633ENST00000472663ENSG00000165309ENST00000298032ENST00000376528ENST00000409049ENST00000409983ENST00000447081ENST00000464017ENST00000465729ENST00000468003ENST00000473919ENST00000483596ENST00000484642ENST00000491803ENST00000496741ENSG00000221221ENST00000408294ENSG00000223131ENST00000411199CIL_0002CX_0002ENSMUSG00000023094ENSMUST00000023856ENSMUST00000126894ENSMUST00000137812ENSMUST00000153289ENSMUSG00000037683ENSMUST00000049255ENSMUST00000114640ENSMUSG00000087674ENSMUST00000136456ENSMUST00000141289ENSMUST00000150514
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CX_0001ENSG00000148450ENST00000376510ENST00000468633ENST00000472663ENSG00000165309ENST00000298032ENST00000376528ENST00000409049ENST00000409983ENST00000464017ENST00000468003ENST00000483596ENST00000491803ENST00000496741ENSG00000221221ENST00000408294ENSG00000223131ENST00000411199CIL_0002CX_0002ENSMUSG00000023094ENSMUST00000023856ENSMUST00000126894ENSMUST00000153289ENSMUSG00000037683ENSMUST00000049255ENSMUST00000114640ENSMUSG00000087674ENSMUST00000136456ENSMUST00000141289ENSMUST00000150514
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000148450 ENST00000376510 2.693±0.00 2.621±0.00 0.650±0.00 2.056±0.68 3.692±2.81 3.411±2.11 6.207±4.57 2.390±1.15 2.178±0.52 2.480±1.71 2.408±0.41 4.526±3.51 5.051±1.82 1.512±0.73
ENST00000468633 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.233±0.00 8.244±0.00 N/A N/A N/A
ENST00000472663 6.984±0.00 10.432±0.00 N/A 9.962±7.79 31.292±0.00 24.535±0.00 53.651±0.00 14.262±11.95 31.399±0.00 21.025±0.00 16.935±0.00 15.401±4.36 18.578±5.74 8.211±5.81
ENSG00000165309 ENST00000298032 N/A N/A N/A 0.114±0.00 N/A N/A N/A N/A N/A 0.911±0.00 N/A 1.958±0.00 N/A 3.724±0.00
ENST00000376528 N/A N/A N/A 0.118±0.00 N/A N/A N/A N/A N/A 0.796±0.00 N/A N/A N/A N/A
ENST00000409049 N/A N/A N/A 0.640±0.00 N/A N/A N/A N/A N/A 1.159±0.00 N/A N/A 0.022±0.00 N/A
ENST00000409983 N/A N/A N/A N/A 0.008±0.00 0.078±0.00 0.021±0.00 0.060±0.00 N/A 1.273±0.00 N/A 0.050±0.00 0.011±0.00 13.247±1.03
ENST00000447081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464017 N/A N/A N/A 0.214±0.00 N/A N/A N/A N/A N/A N/A N/A 0.035±0.02 0.016±0.00 N/A
ENST00000465729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.234±0.17 N/A N/A
ENST00000473919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483596 N/A N/A 0.987±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.354±0.00 0.078±0.00 N/A
ENST00000496741 N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000221221 ENST00000408294 0.255±0.00 1.334±0.00 N/A 0.840±0.00 N/A 0.744±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223131 ENST00000411199 N/A N/A N/A N/A N/A N/A N/A 1.436±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023094 ENSMUST00000023856 24.402±5.45 14.000±2.42 12.697±2.14 5.627±4.65 11.152±3.21 3.340±0.75 41.012±1.13 26.122±0.78 8.515±2.03 11.199±0.99 9.046±1.06 19.509±6.44 1.568±0.64 3.829±0.49
ENSMUST00000126894 N/A 4.650±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.705±0.00 N/A
ENSMUST00000137812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153289 N/A N/A N/A 21.864±0.00 N/A N/A N/A N/A N/A N/A N/A 49.132±0.00 5.248±1.30 N/A
ENSMUSG00000037683 ENSMUST00000049255 0.051±0.03 N/A 0.038±0.02 0.199±0.09 0.035±0.01 0.174±0.11 0.025±0.01 0.053±0.02 0.025±0.02 0.801±0.10 0.016±0.01 0.644±0.27 0.013±0.00 16.598±6.41
ENSMUST00000114640 N/A N/A N/A 0.107±0.04 0.007±0.00 0.003±0.00 N/A 0.006±0.00 0.059±0.05 1.009±0.00 N/A 0.110±0.00 N/A 8.774±3.21
ENSMUSG00000087674 ENSMUST00000136456 0.187±0.12 N/A N/A 0.658±0.00 N/A N/A N/A N/A N/A 0.095±0.00 N/A 0.555±0.34 N/A 1.258±0.33
ENSMUST00000141289 0.024±0.00 0.039±0.00 N/A N/A 0.048±0.02 0.037±0.00 0.017±0.00 0.061±0.04 0.014±0.01 0.029±0.00 N/A 0.126±0.08 N/A 0.726±0.50
ENSMUST00000150514 0.599±0.00 0.168±0.00 N/A 1.716±0.03 0.300±0.00 N/A 0.085±0.03 N/A 0.014±0.00 0.071±0.00 N/A 0.318±0.17 N/A 2.036±0.30

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