C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002HI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000030897-ENSDARG00000078141 CGP 7955 3:43695433-43998893
GeneTranscriptPositionBiotype
ENSDARG00000030897 (psmg3)
proteasome (prosome, macropain) assembly chaperone 3 		ENSDART00000040723 (psmg3-001) 43695433-43696649 protein_coding
ENSDARG00000078141 (ELFN1 (2 of 2))
extracellular leucine-rich repeat and fibronectin type III domain containing 1 		ENSDART00000111535 (ELFN1 (2 of 2)-201) 43996539-43998893 protein_coding
ENSDARG00000097472 (si:dkey-45l12.1)
si:dkey-45l12.1 		ENSDART00000153715 (si:dkey-45l12.1-001) 43798702-43996242 lincRNA
ENSDART00000154340 (si:dkey-45l12.1-002) 43798579-43863204 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0002HI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157778-ENSG00000225968 CGP 9606 7:1567330-1747954
GeneTranscriptPositionBiotype
ENSG00000205971 (AC074389.6)
 ENST00000382528 (AC074389.6-001) 1692810-1694325 lincRNA
ENST00000620671 (AC074389.6-201) 1693050-1693972 lincRNA
ENSG00000225968 (ELFN1)
extracellular leucine-rich repeat and fibronectin type III domain containing 1 		ENST00000424383 (ELFN1-001) 1688119-1747954 protein_coding
ENST00000561626 (ELFN1-201) 1709162-1747954 protein_coding
ENSG00000230444 (TFAMP1)
transcription factor A, mitochondrial pseudogene 1 		ENST00000412727 (TFAMP1-001) 1614590-1615325 processed_pseudogene
ENSG00000230487 (PSMG3-AS1)
PSMG3 antisense RNA 1 (head to head) 		ENST00000437621 (PSMG3-AS1-001) 1570073-1589626 lincRNA
ENST00000437964 (PSMG3-AS1-002) 1570135-1586545 lincRNA
ENST00000457484 (PSMG3-AS1-003) 1570089-1589621 lincRNA
ENST00000524978 (PSMG3-AS1-007) 1570234-1576062 lincRNA
ENST00000532358 (PSMG3-AS1-005) 1570146-1583231 lincRNA
ENST00000533935 (PSMG3-AS1-004) 1570142-1584418 lincRNA
ENST00000612019 (PSMG3-AS1-011) 1570169-1584632 lincRNA
ENSG00000231476 (AC074389.5)
 ENST00000421380 (AC074389.5-001) 1620654-1621405 lincRNA
ENSG00000234977 (AC074389.7)
 ENST00000450458 (AC074389.7-001) 1691906-1692450 lincRNA
ENSG00000236081 (ELFN1-AS1)
ELFN1 antisense RNA 1 		ENST00000415399 (ELFN1-AS1-002) 1738983-1742291 lincRNA
ENST00000453348 (ELFN1-AS1-001) 1738630-1742272 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002HI_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029551-ENSMUSG00000048988 CGP 10090 5:139823592-139974711
GeneTranscriptPositionBiotype
ENSMUSG00000029551 (Psmg3)
proteasome (prosome, macropain) assembly chaperone 3 		ENSMUST00000031531 (Psmg3-001) 139823592-139826885 protein_coding
ENSMUST00000182602 (Psmg3-002) 139823613-139826843 protein_coding
ENSMUST00000182743 (Psmg3-003) 139824475-139826875 retained_intron
ENSMUSG00000048988 (Elfn1)
leucine rich repeat and fibronectin type III, extracellular 1 		ENSMUST00000050519 (Elfn1-201) 139907943-139974711 protein_coding
ENSMUSG00000064694 (Gm24146)
predicted gene, 24146 		ENSMUST00000082760 (Gm24146-201) 139844930-139845250 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002HI_0001ENSDARG00000030897ENSDART00000040723ENSDARG00000078141ENSDART00000111535ENSDARG00000097472ENSDART00000153715ENSDART00000154340CIL_0002HI_0002ENSG00000205971ENST00000382528ENST00000620671ENSG00000225968ENST00000424383ENST00000561626ENSG00000230444ENST00000412727ENSG00000230487ENST00000437621ENST00000437964ENST00000457484ENST00000524978ENST00000532358ENST00000533935ENST00000612019ENSG00000231476ENST00000421380ENSG00000234977ENST00000450458ENSG00000236081ENST00000415399ENST00000453348CIL_0002HI_0003ENSMUSG00000029551ENSMUST00000031531ENSMUST00000182602ENSMUST00000182743ENSMUSG00000048988ENSMUST00000050519ENSMUSG00000064694ENSMUST00000082760
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002HI_0001ENSDARG00000030897ENSDART00000040723ENSDARG00000078141ENSDART00000111535ENSDARG00000097472ENSDART00000153715ENSDART00000154340CIL_0002HI_0002ENSG00000205971ENST00000382528ENST00000620671ENSG00000225968ENST00000424383ENST00000561626ENSG00000230444ENST00000412727ENSG00000230487ENST00000437621ENST00000457484ENST00000533935ENSG00000231476ENST00000421380ENSG00000234977ENST00000450458ENSG00000236081ENST00000415399ENST00000453348CIL_0002HI_0003ENSMUSG00000029551ENSMUST00000031531ENSMUST00000182602ENSMUSG00000048988ENSMUST00000050519ENSMUSG00000064694ENSMUST00000082760
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000030897 ENSDART00000040723 N/A N/A N/A 18.675±3.99 N/A N/A 13.871±6.65 17.496±2.86 4.495±0.00 N/A 24.551±0.00 N/A N/A N/A
ENSDARG00000078141 ENSDART00000111535 N/A N/A N/A 7.390±0.08 N/A N/A N/A N/A 0.018±0.00 N/A 0.306±0.00 N/A N/A N/A
ENSDARG00000097472 ENSDART00000153715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.00 N/A N/A N/A
ENSDART00000154340 N/A N/A N/A 0.440±0.00 N/A N/A 0.104±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000205971 ENST00000382528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.07
ENST00000620671 N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.114±0.00
ENSG00000225968 ENST00000424383 0.379±0.00 0.580±0.00 N/A 0.356±0.12 0.208±0.00 N/A 1.728±0.00 2.819±1.07 0.203±0.16 0.273±0.00 N/A 0.598±0.15 1.263±0.38 0.582±0.39
ENST00000561626 0.597±0.00 0.400±0.00 0.273±0.00 0.793±0.00 0.122±0.04 0.747±0.00 0.433±0.00 N/A 1.137±0.00 0.058±0.00 0.227±0.17 0.410±0.24 0.194±0.02 0.913±0.00
ENSG00000230444 ENST00000412727 N/A N/A N/A 0.095±0.00 N/A N/A N/A N/A 0.283±0.00 N/A N/A 0.063±0.02 N/A 0.230±0.12
ENSG00000230487 ENST00000437621 N/A 0.621±0.00 0.060±0.00 1.010±0.45 0.038±0.00 0.403±0.06 0.696±0.00 0.494±0.00 0.282±0.00 0.100±0.00 N/A 1.318±1.10 N/A 1.177±0.00
ENST00000437964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457484 N/A N/A 0.151±0.00 N/A 0.067±0.00 N/A 0.568±0.00 N/A N/A 0.148±0.00 N/A N/A N/A 1.516±0.00
ENST00000524978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533935 N/A N/A N/A N/A N/A N/A N/A 1.186±0.00 N/A N/A N/A N/A N/A 6.707±0.00
ENST00000612019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000231476 ENST00000421380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.628±0.00
ENSG00000234977 ENST00000450458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.232±0.12
ENSG00000236081 ENST00000415399 N/A 0.154±0.00 N/A N/A N/A N/A N/A 1.380±0.00 0.040±0.00 N/A N/A 1.603±0.77 N/A 0.524±0.00
ENST00000453348 0.126±0.00 0.420±0.00 N/A N/A N/A 0.128±0.00 N/A N/A N/A N/A N/A 4.277±1.33 N/A 0.345±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029551 ENSMUST00000031531 12.827±1.10 11.691±1.53 N/A 17.167±7.15 12.573±0.00 N/A 7.075±0.00 N/A 23.710±11.48 N/A 6.657±1.08 28.757±5.77 20.645±5.16 N/A
ENSMUST00000182602 N/A N/A N/A 13.387±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048988 ENSMUST00000050519 0.267±0.01 13.998±6.19 0.132±0.00 2.875±1.65 0.140±0.06 0.106±0.04 0.065±0.03 3.077±1.02 0.057±0.05 5.105±2.98 0.016±0.00 1.234±0.50 0.102±0.04 13.148±5.85
ENSMUSG00000064694 ENSMUST00000082760 2.575±1.92 1.077±0.57 1.228±0.13 0.929±0.22 2.446±1.19 0.938±0.44 1.361±1.03 1.241±0.68 0.463±0.22 0.873±0.43 N/A 1.350±0.77 0.639±0.32 2.226±0.48

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