Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_0002K7_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000130222-ENSG00000165023	CGP	9606	9:89605013-90643104
Gene	Transcript	Position	Biotype
ENSG00000130222 (GADD45G) growth arrest and DNA-damage-inducible, gamma	ENST00000252506 (GADD45G-001)	89605013-89606555	protein_coding
	ENST00000375769 (GADD45G-002)	89605038-89606235	protein_coding
	ENST00000494726 (GADD45G-003)	89605092-89606098	processed_transcript
ENSG00000165023 (DIRAS2) DIRAS family, GTP-binding RAS-like 2	ENST00000375765 (DIRAS2-001)	90609832-90643104	protein_coding
ENSG00000185074 (OR7E31P) olfactory receptor, family 7, subfamily E, member 31 pseudogene	ENST00000426212 (OR7E31P-001)	90216039-90216924	unprocessed_pseudogene
ENSG00000225072 (OR7E116P) olfactory receptor, family 7, subfamily E, member 116 pseudogene	ENST00000448529 (OR7E116P-001)	90232185-90233141	unprocessed_pseudogene
ENSG00000226206 (RP5-1050E16.2)	ENST00000421297 (RP5-1050E16.2-001)	89799695-89821753	lincRNA
ENSG00000227555 (RP11-406A20.4)	ENST00000426593 (RP11-406A20.4-001)	90020654-90041499	lincRNA
ENSG00000229613 (LINC01501) long intergenic non-protein coding RNA 1501	ENST00000427523 (LINC01501-001)	90463524-90466945	lincRNA
	ENST00000429044 (LINC01501-003)	90561029-90582694	lincRNA
	ENST00000449990 (LINC01501-002)	90463659-90582744	lincRNA
ENSG00000231107 (LINC01508) long intergenic non-protein coding RNA 1508	ENST00000425666 (LINC01508-001)	90300902-90433489	lincRNA
	ENST00000436671 (LINC01508-002)	90383610-90433505	lincRNA
ENSG00000234910 (IL6RP1) interleukin 6 receptor pseudogene 1	ENST00000417848 (IL6RP1-001)	90081297-90082569	processed_pseudogene
ENSG00000236507 (RP5-1050E16.1)	ENST00000442086 (RP5-1050E16.1-001)	89801727-89803061	lincRNA
ENSG00000237372 (UNQ6494) uncharacterized LOC100129066	ENST00000444374 (UNQ6494-001)	89701651-89719670	lincRNA
ENSG00000237372 (UNQ6494) uncharacterized LOC100129066	ENST00000617436 (UNQ6494-003)	89639814-89719759	lincRNA
ENSG00000237626 (RP11-406A20.1)	ENST00000446201 (RP11-406A20.1-001)	89978282-89987486	lincRNA
ENSG00000279503 (RP11-30P16.1)	ENST00000625060 (RP11-30P16.1-001)	90158028-90158646	TEC

CIL_0002K7_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000021453-ENSMUSG00000047842	CGP	10090	13:51846678-52530836
Gene	Transcript	Position	Biotype
ENSMUSG00000021453 (Gadd45g) growth arrest and DNA-damage-inducible 45 gamma	ENSMUST00000021903 (Gadd45g-001)	51846678-51848468	protein_coding
	ENSMUST00000132480 (Gadd45g-002)	51846744-51848224	retained_intron
ENSMUSG00000047842 (Diras2) DIRAS family, GTP-binding RAS-like 2	ENSMUST00000057442 (Diras2-201)	52504375-52530836	protein_coding
ENSMUSG00000097495 (Gm26651) predicted gene, 26651	ENSMUST00000181851 (Gm26651-201)	51973214-51976583	lincRNA

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000130222

ENST00000252506

2.905±0.00

2.093±0.00

N/A

4.756±0.00

2.842±0.00

5.076±4.94

6.013±4.90

6.674±2.48

34.666±0.00

6.577±0.00

8.612±7.13

14.197±9.31

53.134±18.57

15.766±1.55

ENST00000375769

N/A

0.101±0.00

1.787±0.00

N/A

2.145±0.00

3.391±0.00

5.480±0.00

0.859±0.00

2.055±0.55

N/A

8.211±0.00

N/A

ENST00000494726

N/A

1.139±0.12

N/A

ENSG00000165023

ENST00000375765

0.029±0.00

0.017±0.00

0.132±0.00

46.589±8.72

0.084±0.02

0.335±0.08

0.040±0.00

0.243±0.19

0.192±0.15

0.017±0.01

0.012±0.00

0.031±0.00

0.893±0.75

0.084±0.03

ENSG00000185074

ENST00000426212

N/A

0.091±0.00

N/A

ENSG00000225072

ENST00000448529

N/A

0.184±0.00

N/A

0.232±0.00

ENSG00000226206

ENST00000421297

N/A

0.065±0.00

N/A

0.138±0.03

0.153±0.06

0.298±0.00

ENSG00000227555

ENST00000426593

N/A

0.018±0.00

0.006±0.00

N/A

0.005±0.00

0.016±0.00

0.005±0.00

N/A

0.047±0.02

ENSG00000229613

ENST00000427523

N/A

0.342±0.00

N/A

ENST00000429044

N/A

2.473±0.00

ENST00000449990

N/A

0.073±0.00

N/A

0.685±0.11

ENSG00000231107

ENST00000425666

N/A

0.177±0.00

0.014±0.00

0.026±0.00

N/A

0.012±0.00

0.579±0.00

N/A

0.163±0.08

N/A

0.033±0.00

0.200±0.00

0.261±0.02

ENST00000436671

N/A

0.330±0.00

ENSG00000234910

ENST00000417848

N/A

0.011±0.00

N/A

0.032±0.00

ENSG00000236507

ENST00000442086

N/A

0.043±0.00

N/A

ENSG00000237372

ENST00000444374

N/A

0.486±0.00

N/A

0.056±0.00

ENST00000617436

N/A

0.062±0.00

N/A

0.076±0.00

0.016±0.00

N/A

0.014±0.00

N/A

0.785±0.00

N/A

0.061±0.00

0.041±0.03

0.070±0.02

0.026±0.01

ENSG00000237626

ENST00000446201

N/A

0.037±0.00

N/A

0.066±0.00

N/A

0.953±0.28

ENSG00000279503

ENST00000625060

N/A

0.046±0.00

N/A

0.217±0.13

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000021453

ENSMUST00000021903

34.765±9.13

6.910±4.70

49.205±21.26

31.745±18.57

31.355±14.01

11.123±1.55

10.387±3.28

27.770±2.08

8.822±6.19

22.876±3.90

49.715±24.08

20.931±4.07

57.508±22.16

5.677±1.19

ENSMUST00000132480

5.874±0.00

6.540±1.67

N/A

6.588±2.88

14.153±2.93

3.255±1.01

1.140±0.17

5.693±1.49

1.313±0.60

5.159±0.90

N/A

7.502±1.99

8.423±0.00

1.004±0.36

ENSMUSG00000047842

ENSMUST00000057442

0.854±0.18

2.449±0.66

3.871±0.73

14.640±12.83

0.773±0.08

3.495±0.62

0.310±0.10

0.056±0.03

0.148±0.11

2.786±0.26

0.041±0.02

3.741±0.91

2.306±1.19

0.978±0.45

ENSMUSG00000097495

ENSMUST00000181851

0.012±0.00

0.026±0.00

0.007±0.00

N/A

0.029±0.00

0.104±0.07

0.012±0.00

0.016±0.01

0.004±0.00

0.034±0.02

N/A

0.044±0.02

0.206±0.14

0.219±0.09

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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