C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002P4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000003877-ENSDARG00000006219 CGP 7955 11:3971866-4033144
GeneTranscriptPositionBiotype
ENSDARG00000003877 (PBRM1 (1 of 2))
polybromo 1 		ENSDART00000045971 (PBRM1 (1 of 2)-201) 3971866-4016800 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002P4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163939-ENSG00000163938 CGP 9606 3:52545352-52694492
GeneTranscriptPositionBiotype
ENSG00000163938 (GNL3)
guanine nucleotide binding protein-like 3 (nucleolar) 		ENST00000394799 (GNL3-002) 52686016-52694492 protein_coding
ENST00000418458 (GNL3-001) 52685920-52694492 protein_coding
ENST00000460073 (GNL3-009) 52686177-52688190 processed_transcript
ENST00000462550 (GNL3-006) 52686032-52687827 retained_intron
ENST00000468146 (GNL3-007) 52686005-52689086 processed_transcript
ENST00000468885 (GNL3-005) 52686030-52686955 retained_intron
ENST00000474423 (GNL3-008) 52686171-52687616 protein_coding
ENST00000479230 (GNL3-011) 52681156-52689105 protein_coding
ENST00000484022 (GNL3-010) 52688925-52692929 retained_intron
ENST00000492349 (GNL3-003) 52686032-52690704 nonsense_mediated_decay
ENST00000496254 (GNL3-004) 52686049-52694459 retained_intron
ENST00000497356 (GNL3-012) 52693170-52693779 retained_intron
ENSG00000212452 (SNORD69)
small nucleolar RNA, C/D box 69 		ENST00000391150 (SNORD69-201) 52692736-52692812 snoRNA
ENSG00000212493 (SNORD19)
small nucleolar RNA, C/D box 19 		ENST00000391191 (SNORD19-201) 52689248-52689315 snoRNA
ENSG00000221518 (RNU6ATAC16P)
RNA, U6atac small nuclear 16, pseudogene 		ENST00000408591 (RNU6ATAC16P-201) 52560570-52560707 snRNA
ENSG00000222345 (SNORD19)
Small nucleolar RNA SNORD19 		ENST00000410413 (SNORD19.1-201) 52691378-52691453 snoRNA
ENSG00000252768 (RNU6-856P)
RNA, U6 small nuclear 856, pseudogene 		ENST00000516959 (RNU6-856P-201) 52551846-52551943 snRNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002P4_0001ENSDARG00000003877ENSDART00000045971CIL_0002P4_0002ENSG00000163938ENST00000394799ENST00000418458ENST00000460073ENST00000462550ENST00000468146ENST00000468885ENST00000474423ENST00000479230ENST00000484022ENST00000492349ENST00000496254ENST00000497356ENSG00000212452ENST00000391150ENSG00000212493ENST00000391191ENSG00000221518ENST00000408591ENSG00000222345ENST00000410413ENSG00000252768ENST00000516959
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002P4_0001ENSDARG00000003877ENSDART00000045971CIL_0002P4_0002ENSG00000163938ENST00000394799ENST00000418458ENST00000484022ENST00000496254ENST00000497356ENSG00000212452ENST00000391150ENSG00000212493ENST00000391191ENSG00000221518ENST00000408591ENSG00000222345ENST00000410413ENSG00000252768ENST00000516959
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003877 ENSDART00000045971 N/A N/A N/A 10.119±4.99 N/A N/A 0.779±0.60 0.189±0.03 0.111±0.00 N/A 0.696±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163938 ENST00000394799 N/A N/A N/A N/A N/A 4.010±0.00 N/A N/A N/A N/A N/A 22.752±0.00 N/A N/A
ENST00000418458 18.730±0.00 31.529±0.00 N/A 13.853±6.52 13.418±3.71 17.272±0.00 7.100±5.02 18.712±0.00 16.865±13.19 15.849±9.57 16.741±14.39 25.063±12.51 16.599±0.58 30.157±6.14
ENST00000460073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484022 N/A N/A N/A N/A 26.964±0.00 N/A N/A N/A 15.593±0.00 N/A N/A N/A N/A N/A
ENST00000492349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496254 N/A N/A 2.525±0.00 N/A N/A 6.165±0.00 N/A N/A N/A N/A N/A 6.259±0.00 N/A N/A
ENST00000497356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 312.663±0.00 100.596±0.00 184.073±0.00
ENSG00000212452 ENST00000391150 0.347±0.00 2.163±0.00 N/A N/A N/A N/A N/A N/A 2.193±0.00 1.018±0.00 N/A N/A N/A 1.543±0.03
ENSG00000212493 ENST00000391191 1.408±0.00 4.420±0.00 N/A 1.429±0.00 5.766±0.00 N/A N/A 0.944±0.00 N/A N/A N/A N/A N/A 3.889±0.00
ENSG00000221518 ENST00000408591 0.314±0.00 1.147±0.00 N/A N/A 1.921±1.41 N/A N/A 0.832±0.00 N/A N/A 12.946±0.00 N/A N/A 0.299±0.00
ENSG00000222345 ENST00000410413 N/A 0.305±0.00 N/A N/A N/A N/A 0.262±0.00 0.283±0.00 0.784±0.00 0.779±0.00 N/A 48.377±47.21 N/A N/A
ENSG00000252768 ENST00000516959 N/A 0.222±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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