| Source ID |
Type |
Tax ID |
Position |
| ENSDARG00000062154-ENSDARG00000057249 |
CGP |
7955 |
24:27893528-28126599  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0002P8_0001 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0002P8_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000057249' => 'zinc finger, MYND domain containing 11',
'ENSDARG00000062154' => 'DIP2 disco-interacting protein 2 homolog C (Drosophila)',
'ENSMUSG00000021156' => 'zinc finger, MYND domain containing 11',
'ENSMUSG00000048264' => 'DIP2 disco-interacting protein 2 homolog C (Drosophila)',
'ENSMUSG00000088366' => 'predicted gene, 23496',
'ENSMUSG00000097859' => 'predicted gene, 26601'
),
'gene_name_arr' => array(
'ENSDARG00000057249' => 'zmynd11',
'ENSDARG00000062154' => 'dip2c',
'ENSMUSG00000021156' => 'Zmynd11',
'ENSMUSG00000048264' => 'Dip2c',
'ENSMUSG00000088366' => 'Gm23496',
'ENSMUSG00000097859' => 'Gm26601'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 22 => 'Brain',
(int) 35 => 'Breast',
(int) 43 => 'Colon',
(int) 50 => 'Heart',
(int) 61 => 'Kidney',
(int) 70 => 'Liver',
(int) 82 => 'Lung',
(int) 88 => 'Muscle',
(int) 95 => 'Ovary',
(int) 107 => 'Placenta',
(int) 116 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 32,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000079863' => array(
'start' => '28114863',
'end' => '28126592',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zmynd11-002'
),
'ENSDART00000105768' => array(
'start' => '28094997',
'end' => '28126592',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zmynd11-001'
),
'ENSDART00000134339' => array(
'start' => '28116761',
'end' => '28126599',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zmynd11-003'
),
'ENSDART00000134380' => array(
'start' => '28109035',
'end' => '28114682',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zmynd11-004'
),
'ENSDART00000089541' => array(
'start' => '27893870',
'end' => '28071105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dip2c-201'
),
'ENSDART00000131797' => array(
'start' => '28046320',
'end' => '28048997',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'dip2c-002'
),
'ENSDART00000137212' => array(
'start' => '27893528',
'end' => '28093295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dip2c-001'
),
'ENSDART00000148554' => array(
'start' => '27893763',
'end' => '27901232',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'dip2c-003'
),
'ENSMUST00000062658' => array(
'start' => '9684838',
'end' => '9765160',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-003'
),
'ENSMUST00000110633' => array(
'start' => '9686862',
'end' => '9720928',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-007'
),
'ENSMUST00000110634' => array(
'start' => '9685095',
'end' => '9764956',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-002'
),
'ENSMUST00000110635' => array(
'start' => '9684841',
'end' => '9764470',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-006'
),
'ENSMUST00000110636' => array(
'start' => '9684836',
'end' => '9765314',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-001'
),
'ENSMUST00000110637' => array(
'start' => '9684836',
'end' => '9764423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-005'
),
'ENSMUST00000110638' => array(
'start' => '9684836',
'end' => '9764488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-004'
),
'ENSMUST00000128658' => array(
'start' => '9697644',
'end' => '9764937',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-010'
),
'ENSMUST00000130151' => array(
'start' => '9694287',
'end' => '9765270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-016'
),
'ENSMUST00000137813' => array(
'start' => '9689139',
'end' => '9690510',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zmynd11-019'
),
'ENSMUST00000137932' => array(
'start' => '9684841',
'end' => '9691273',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zmynd11-008'
),
'ENSMUST00000138039' => array(
'start' => '9693475',
'end' => '9696139',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zmynd11-018'
),
'ENSMUST00000140180' => array(
'start' => '9697700',
'end' => '9735418',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zmynd11-017'
),
'ENSMUST00000144642' => array(
'start' => '9698658',
'end' => '9735884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-014'
),
'ENSMUST00000146039' => array(
'start' => '9710175',
'end' => '9764454',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-011'
),
'ENSMUST00000146059' => array(
'start' => '9697703',
'end' => '9764418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-013'
),
'ENSMUST00000152725' => array(
'start' => '9697644',
'end' => '9765321',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-009'
),
'ENSMUST00000154994' => array(
'start' => '9695133',
'end' => '9764444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-012'
),
'ENSMUST00000157035' => array(
'start' => '9697663',
'end' => '9735776',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zmynd11-015'
),
'ENSMUST00000166299' => array(
'start' => '9276982',
'end' => '9666178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dip2c-201'
),
'ENSMUST00000169960' => array(
'start' => '9276933',
'end' => '9666178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dip2c-002'
),
'ENSMUST00000174552' => array(
'start' => '9276528',
'end' => '9668928',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dip2c-001'
),
'ENSMUST00000157741' => array(
'start' => '9623380',
'end' => '9623627',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm23496-201'
),
'ENSMUST00000181427' => array(
'start' => '9387139',
'end' => '9391741',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26601-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0002P8_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0002P8_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021156' => array(
[maximum depth reached]
),
'ENSMUSG00000048264' => array(
[maximum depth reached]
),
'ENSMUSG00000088366' => array(
[maximum depth reached]
),
'ENSMUSG00000097859' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Heart',
(int) 10 => 'Liver',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Liver',
(int) 28 => 'Ovary',
(int) 29 => 'Adipose',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Testis',
(int) 52 => 'Testis',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Ovary',
(int) 58 => 'Brain',
(int) 59 => 'Placenta',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Ovary',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Adrenal',
(int) 70 => 'Brain',
(int) 71 => 'Breast',
(int) 72 => 'Colon',
(int) 73 => 'Heart',
(int) 74 => 'Kidney',
(int) 75 => 'Liver',
(int) 76 => 'Lung',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Adipose',
(int) 81 => 'Adrenal',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Brain',
(int) 96 => 'Heart',
(int) 97 => 'Kidney',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Adipose',
(int) 101 => 'Adrenal',
(int) 102 => 'Bladder',
(int) 103 => 'Brain',
(int) 104 => 'Breast',
(int) 105 => 'Colon',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000057249' => 'zinc finger, MYND domain containing 11',
'ENSDARG00000062154' => 'DIP2 disco-interacting protein 2 homolog C (Drosophila)',
'ENSMUSG00000021156' => 'zinc finger, MYND domain containing 11',
'ENSMUSG00000048264' => 'DIP2 disco-interacting protein 2 homolog C (Drosophila)',
'ENSMUSG00000088366' => 'predicted gene, 23496',
'ENSMUSG00000097859' => 'predicted gene, 26601'
)
$gene_name_arr = array(
'ENSDARG00000057249' => 'zmynd11',
'ENSDARG00000062154' => 'dip2c',
'ENSMUSG00000021156' => 'Zmynd11',
'ENSMUSG00000048264' => 'Dip2c',
'ENSMUSG00000088366' => 'Gm23496',
'ENSMUSG00000097859' => 'Gm26601'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0002P8_0001',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '27893528',
'seq_end' => '28126599',
'region_length' => '233071',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000062154-ENSDARG00000057249'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0002P8_0002',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '9276528',
'seq_end' => '9765321',
'region_length' => '488793',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000048264-ENSMUSG00000021156'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 22 => 'Brain',
(int) 35 => 'Breast',
(int) 43 => 'Colon',
(int) 50 => 'Heart',
(int) 61 => 'Kidney',
(int) 70 => 'Liver',
(int) 82 => 'Lung',
(int) 88 => 'Muscle',
(int) 95 => 'Ovary',
(int) 107 => 'Placenta',
(int) 116 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 32
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000079863' => array(
'start' => '28114863',
'end' => '28126592',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zmynd11-002'
),
'ENSDART00000105768' => array(
'start' => '28094997',
'end' => '28126592',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zmynd11-001'
),
'ENSDART00000134339' => array(
'start' => '28116761',
'end' => '28126599',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zmynd11-003'
),
'ENSDART00000134380' => array(
'start' => '28109035',
'end' => '28114682',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zmynd11-004'
),
'ENSDART00000089541' => array(
'start' => '27893870',
'end' => '28071105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dip2c-201'
),
'ENSDART00000131797' => array(
'start' => '28046320',
'end' => '28048997',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'dip2c-002'
),
'ENSDART00000137212' => array(
'start' => '27893528',
'end' => '28093295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dip2c-001'
),
'ENSDART00000148554' => array(
'start' => '27893763',
'end' => '27901232',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'dip2c-003'
),
'ENSMUST00000062658' => array(
'start' => '9684838',
'end' => '9765160',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-003'
),
'ENSMUST00000110633' => array(
'start' => '9686862',
'end' => '9720928',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-007'
),
'ENSMUST00000110634' => array(
'start' => '9685095',
'end' => '9764956',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-002'
),
'ENSMUST00000110635' => array(
'start' => '9684841',
'end' => '9764470',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-006'
),
'ENSMUST00000110636' => array(
'start' => '9684836',
'end' => '9765314',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-001'
),
'ENSMUST00000110637' => array(
'start' => '9684836',
'end' => '9764423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-005'
),
'ENSMUST00000110638' => array(
'start' => '9684836',
'end' => '9764488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-004'
),
'ENSMUST00000128658' => array(
'start' => '9697644',
'end' => '9764937',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-010'
),
'ENSMUST00000130151' => array(
'start' => '9694287',
'end' => '9765270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-016'
),
'ENSMUST00000137813' => array(
'start' => '9689139',
'end' => '9690510',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zmynd11-019'
),
'ENSMUST00000137932' => array(
'start' => '9684841',
'end' => '9691273',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zmynd11-008'
),
'ENSMUST00000138039' => array(
'start' => '9693475',
'end' => '9696139',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zmynd11-018'
),
'ENSMUST00000140180' => array(
'start' => '9697700',
'end' => '9735418',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zmynd11-017'
),
'ENSMUST00000144642' => array(
'start' => '9698658',
'end' => '9735884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-014'
),
'ENSMUST00000146039' => array(
'start' => '9710175',
'end' => '9764454',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-011'
),
'ENSMUST00000146059' => array(
'start' => '9697703',
'end' => '9764418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-013'
),
'ENSMUST00000152725' => array(
'start' => '9697644',
'end' => '9765321',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-009'
),
'ENSMUST00000154994' => array(
'start' => '9695133',
'end' => '9764444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-012'
),
'ENSMUST00000157035' => array(
'start' => '9697663',
'end' => '9735776',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zmynd11-015'
),
'ENSMUST00000166299' => array(
'start' => '9276982',
'end' => '9666178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dip2c-201'
),
'ENSMUST00000169960' => array(
'start' => '9276933',
'end' => '9666178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dip2c-002'
),
'ENSMUST00000174552' => array(
'start' => '9276528',
'end' => '9668928',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dip2c-001'
),
'ENSMUST00000157741' => array(
'start' => '9623380',
'end' => '9623627',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm23496-201'
),
'ENSMUST00000181427' => array(
'start' => '9387139',
'end' => '9391741',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26601-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0002P8_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021156' => array(
[maximum depth reached]
),
'ENSMUSG00000048264' => array(
[maximum depth reached]
),
'ENSMUSG00000088366' => array(
[maximum depth reached]
),
'ENSMUSG00000097859' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Heart',
(int) 10 => 'Liver',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Liver',
(int) 28 => 'Ovary',
(int) 29 => 'Adipose',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Testis',
(int) 52 => 'Testis',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Ovary',
(int) 58 => 'Brain',
(int) 59 => 'Placenta',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Ovary',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Adrenal',
(int) 70 => 'Brain',
(int) 71 => 'Breast',
(int) 72 => 'Colon',
(int) 73 => 'Heart',
(int) 74 => 'Kidney',
(int) 75 => 'Liver',
(int) 76 => 'Lung',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Adipose',
(int) 81 => 'Adrenal',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Brain',
(int) 96 => 'Heart',
(int) 97 => 'Kidney',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Adipose',
(int) 101 => 'Adrenal',
(int) 102 => 'Bladder',
(int) 103 => 'Brain',
(int) 104 => 'Breast',
(int) 105 => 'Colon',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0002P8_0001',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '27893528',
'seq_end' => '28126599',
'region_length' => '233071',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000062154-ENSDARG00000057249'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0002P8_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000057249' => 'zinc finger, MYND domain containing 11',
'ENSDARG00000062154' => 'DIP2 disco-interacting protein 2 homolog C (Drosophila)',
'ENSMUSG00000021156' => 'zinc finger, MYND domain containing 11',
'ENSMUSG00000048264' => 'DIP2 disco-interacting protein 2 homolog C (Drosophila)',
'ENSMUSG00000088366' => 'predicted gene, 23496',
'ENSMUSG00000097859' => 'predicted gene, 26601'
),
'gene_name_arr' => array(
'ENSDARG00000057249' => 'zmynd11',
'ENSDARG00000062154' => 'dip2c',
'ENSMUSG00000021156' => 'Zmynd11',
'ENSMUSG00000048264' => 'Dip2c',
'ENSMUSG00000088366' => 'Gm23496',
'ENSMUSG00000097859' => 'Gm26601'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 22 => 'Brain',
(int) 35 => 'Breast',
(int) 43 => 'Colon',
(int) 50 => 'Heart',
(int) 61 => 'Kidney',
(int) 70 => 'Liver',
(int) 82 => 'Lung',
(int) 88 => 'Muscle',
(int) 95 => 'Ovary',
(int) 107 => 'Placenta',
(int) 116 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 32,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000079863' => array(
'start' => '28114863',
'end' => '28126592',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zmynd11-002'
),
'ENSDART00000105768' => array(
'start' => '28094997',
'end' => '28126592',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zmynd11-001'
),
'ENSDART00000134339' => array(
'start' => '28116761',
'end' => '28126599',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zmynd11-003'
),
'ENSDART00000134380' => array(
'start' => '28109035',
'end' => '28114682',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zmynd11-004'
),
'ENSDART00000089541' => array(
'start' => '27893870',
'end' => '28071105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dip2c-201'
),
'ENSDART00000131797' => array(
'start' => '28046320',
'end' => '28048997',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'dip2c-002'
),
'ENSDART00000137212' => array(
'start' => '27893528',
'end' => '28093295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dip2c-001'
),
'ENSDART00000148554' => array(
'start' => '27893763',
'end' => '27901232',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'dip2c-003'
),
'ENSMUST00000062658' => array(
'start' => '9684838',
'end' => '9765160',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-003'
),
'ENSMUST00000110633' => array(
'start' => '9686862',
'end' => '9720928',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-007'
),
'ENSMUST00000110634' => array(
'start' => '9685095',
'end' => '9764956',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-002'
),
'ENSMUST00000110635' => array(
'start' => '9684841',
'end' => '9764470',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-006'
),
'ENSMUST00000110636' => array(
'start' => '9684836',
'end' => '9765314',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-001'
),
'ENSMUST00000110637' => array(
'start' => '9684836',
'end' => '9764423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-005'
),
'ENSMUST00000110638' => array(
'start' => '9684836',
'end' => '9764488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-004'
),
'ENSMUST00000128658' => array(
'start' => '9697644',
'end' => '9764937',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-010'
),
'ENSMUST00000130151' => array(
'start' => '9694287',
'end' => '9765270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-016'
),
'ENSMUST00000137813' => array(
'start' => '9689139',
'end' => '9690510',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zmynd11-019'
),
'ENSMUST00000137932' => array(
'start' => '9684841',
'end' => '9691273',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zmynd11-008'
),
'ENSMUST00000138039' => array(
'start' => '9693475',
'end' => '9696139',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zmynd11-018'
),
'ENSMUST00000140180' => array(
'start' => '9697700',
'end' => '9735418',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zmynd11-017'
),
'ENSMUST00000144642' => array(
'start' => '9698658',
'end' => '9735884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-014'
),
'ENSMUST00000146039' => array(
'start' => '9710175',
'end' => '9764454',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-011'
),
'ENSMUST00000146059' => array(
'start' => '9697703',
'end' => '9764418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-013'
),
'ENSMUST00000152725' => array(
'start' => '9697644',
'end' => '9765321',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-009'
),
'ENSMUST00000154994' => array(
'start' => '9695133',
'end' => '9764444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-012'
),
'ENSMUST00000157035' => array(
'start' => '9697663',
'end' => '9735776',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zmynd11-015'
),
'ENSMUST00000166299' => array(
'start' => '9276982',
'end' => '9666178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dip2c-201'
),
'ENSMUST00000169960' => array(
'start' => '9276933',
'end' => '9666178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dip2c-002'
),
'ENSMUST00000174552' => array(
'start' => '9276528',
'end' => '9668928',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dip2c-001'
),
'ENSMUST00000157741' => array(
'start' => '9623380',
'end' => '9623627',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm23496-201'
),
'ENSMUST00000181427' => array(
'start' => '9387139',
'end' => '9391741',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26601-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0002P8_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0002P8_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021156' => array(
[maximum depth reached]
),
'ENSMUSG00000048264' => array(
[maximum depth reached]
),
'ENSMUSG00000088366' => array(
[maximum depth reached]
),
'ENSMUSG00000097859' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Heart',
(int) 10 => 'Liver',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Liver',
(int) 28 => 'Ovary',
(int) 29 => 'Adipose',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Testis',
(int) 52 => 'Testis',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Ovary',
(int) 58 => 'Brain',
(int) 59 => 'Placenta',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Ovary',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Adrenal',
(int) 70 => 'Brain',
(int) 71 => 'Breast',
(int) 72 => 'Colon',
(int) 73 => 'Heart',
(int) 74 => 'Kidney',
(int) 75 => 'Liver',
(int) 76 => 'Lung',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Adipose',
(int) 81 => 'Adrenal',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Brain',
(int) 96 => 'Heart',
(int) 97 => 'Kidney',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Adipose',
(int) 101 => 'Adrenal',
(int) 102 => 'Bladder',
(int) 103 => 'Brain',
(int) 104 => 'Breast',
(int) 105 => 'Colon',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000057249' => 'zinc finger, MYND domain containing 11',
'ENSDARG00000062154' => 'DIP2 disco-interacting protein 2 homolog C (Drosophila)',
'ENSMUSG00000021156' => 'zinc finger, MYND domain containing 11',
'ENSMUSG00000048264' => 'DIP2 disco-interacting protein 2 homolog C (Drosophila)',
'ENSMUSG00000088366' => 'predicted gene, 23496',
'ENSMUSG00000097859' => 'predicted gene, 26601'
)
$gene_name_arr = array(
'ENSDARG00000057249' => 'zmynd11',
'ENSDARG00000062154' => 'dip2c',
'ENSMUSG00000021156' => 'Zmynd11',
'ENSMUSG00000048264' => 'Dip2c',
'ENSMUSG00000088366' => 'Gm23496',
'ENSMUSG00000097859' => 'Gm26601'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0002P8_0001',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '27893528',
'seq_end' => '28126599',
'region_length' => '233071',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000062154-ENSDARG00000057249'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0002P8_0002',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '9276528',
'seq_end' => '9765321',
'region_length' => '488793',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000048264-ENSMUSG00000021156'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 22 => 'Brain',
(int) 35 => 'Breast',
(int) 43 => 'Colon',
(int) 50 => 'Heart',
(int) 61 => 'Kidney',
(int) 70 => 'Liver',
(int) 82 => 'Lung',
(int) 88 => 'Muscle',
(int) 95 => 'Ovary',
(int) 107 => 'Placenta',
(int) 116 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 32
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000079863' => array(
'start' => '28114863',
'end' => '28126592',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zmynd11-002'
),
'ENSDART00000105768' => array(
'start' => '28094997',
'end' => '28126592',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zmynd11-001'
),
'ENSDART00000134339' => array(
'start' => '28116761',
'end' => '28126599',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zmynd11-003'
),
'ENSDART00000134380' => array(
'start' => '28109035',
'end' => '28114682',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zmynd11-004'
),
'ENSDART00000089541' => array(
'start' => '27893870',
'end' => '28071105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dip2c-201'
),
'ENSDART00000131797' => array(
'start' => '28046320',
'end' => '28048997',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'dip2c-002'
),
'ENSDART00000137212' => array(
'start' => '27893528',
'end' => '28093295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dip2c-001'
),
'ENSDART00000148554' => array(
'start' => '27893763',
'end' => '27901232',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'dip2c-003'
),
'ENSMUST00000062658' => array(
'start' => '9684838',
'end' => '9765160',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-003'
),
'ENSMUST00000110633' => array(
'start' => '9686862',
'end' => '9720928',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-007'
),
'ENSMUST00000110634' => array(
'start' => '9685095',
'end' => '9764956',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-002'
),
'ENSMUST00000110635' => array(
'start' => '9684841',
'end' => '9764470',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-006'
),
'ENSMUST00000110636' => array(
'start' => '9684836',
'end' => '9765314',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-001'
),
'ENSMUST00000110637' => array(
'start' => '9684836',
'end' => '9764423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-005'
),
'ENSMUST00000110638' => array(
'start' => '9684836',
'end' => '9764488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-004'
),
'ENSMUST00000128658' => array(
'start' => '9697644',
'end' => '9764937',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-010'
),
'ENSMUST00000130151' => array(
'start' => '9694287',
'end' => '9765270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-016'
),
'ENSMUST00000137813' => array(
'start' => '9689139',
'end' => '9690510',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zmynd11-019'
),
'ENSMUST00000137932' => array(
'start' => '9684841',
'end' => '9691273',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zmynd11-008'
),
'ENSMUST00000138039' => array(
'start' => '9693475',
'end' => '9696139',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zmynd11-018'
),
'ENSMUST00000140180' => array(
'start' => '9697700',
'end' => '9735418',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zmynd11-017'
),
'ENSMUST00000144642' => array(
'start' => '9698658',
'end' => '9735884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-014'
),
'ENSMUST00000146039' => array(
'start' => '9710175',
'end' => '9764454',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-011'
),
'ENSMUST00000146059' => array(
'start' => '9697703',
'end' => '9764418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-013'
),
'ENSMUST00000152725' => array(
'start' => '9697644',
'end' => '9765321',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-009'
),
'ENSMUST00000154994' => array(
'start' => '9695133',
'end' => '9764444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zmynd11-012'
),
'ENSMUST00000157035' => array(
'start' => '9697663',
'end' => '9735776',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zmynd11-015'
),
'ENSMUST00000166299' => array(
'start' => '9276982',
'end' => '9666178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dip2c-201'
),
'ENSMUST00000169960' => array(
'start' => '9276933',
'end' => '9666178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dip2c-002'
),
'ENSMUST00000174552' => array(
'start' => '9276528',
'end' => '9668928',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dip2c-001'
),
'ENSMUST00000157741' => array(
'start' => '9623380',
'end' => '9623627',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm23496-201'
),
'ENSMUST00000181427' => array(
'start' => '9387139',
'end' => '9391741',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26601-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0002P8_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021156' => array(
[maximum depth reached]
),
'ENSMUSG00000048264' => array(
[maximum depth reached]
),
'ENSMUSG00000088366' => array(
[maximum depth reached]
),
'ENSMUSG00000097859' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Heart',
(int) 10 => 'Liver',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Liver',
(int) 28 => 'Ovary',
(int) 29 => 'Adipose',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Testis',
(int) 52 => 'Testis',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Ovary',
(int) 58 => 'Brain',
(int) 59 => 'Placenta',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Ovary',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Adrenal',
(int) 70 => 'Brain',
(int) 71 => 'Breast',
(int) 72 => 'Colon',
(int) 73 => 'Heart',
(int) 74 => 'Kidney',
(int) 75 => 'Liver',
(int) 76 => 'Lung',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Adipose',
(int) 81 => 'Adrenal',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Brain',
(int) 96 => 'Heart',
(int) 97 => 'Kidney',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Adipose',
(int) 101 => 'Adrenal',
(int) 102 => 'Bladder',
(int) 103 => 'Brain',
(int) 104 => 'Breast',
(int) 105 => 'Colon',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0002P8_0001',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '27893528',
'seq_end' => '28126599',
'region_length' => '233071',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000062154-ENSDARG00000057249'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(Zmynd11)