C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, MYND domain containing 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021156 Zmynd11 10090 - 13:9684836-9765321 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000062658 Zmynd11-003 9684838-9765160 protein_coding
  ENSMUST00000110633 Zmynd11-007 9686862-9720928 protein_coding
  ENSMUST00000110634 Zmynd11-002 9685095-9764956 protein_coding
  ENSMUST00000110635 Zmynd11-006 9684841-9764470 protein_coding
  ENSMUST00000110636 Zmynd11-001 9684836-9765314 protein_coding
  ENSMUST00000110637 Zmynd11-005 9684836-9764423 protein_coding
  ENSMUST00000110638 Zmynd11-004 9684836-9764488 protein_coding
  ENSMUST00000128658 Zmynd11-010 9697644-9764937 protein_coding
  ENSMUST00000130151 Zmynd11-016 9694287-9765270 protein_coding
  ENSMUST00000137813 Zmynd11-019 9689139-9690510 retained_intron
  ENSMUST00000137932 Zmynd11-008 9684841-9691273 retained_intron
  ENSMUST00000138039 Zmynd11-018 9693475-9696139 retained_intron
  ENSMUST00000140180 Zmynd11-017 9697700-9735418 processed_transcript
  ENSMUST00000144642 Zmynd11-014 9698658-9735884 protein_coding
  ENSMUST00000146039 Zmynd11-011 9710175-9764454 protein_coding
  ENSMUST00000146059 Zmynd11-013 9697703-9764418 protein_coding
  ENSMUST00000152725 Zmynd11-009 9697644-9765321 protein_coding
  ENSMUST00000154994 Zmynd11-012 9695133-9764444 protein_coding
  ENSMUST00000157035 Zmynd11-015 9697663-9735776 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062658ENSMUST00000110633ENSMUST00000110634ENSMUST00000110635ENSMUST00000110636ENSMUST00000110637ENSMUST00000110638ENSMUST00000137813ENSMUST00000137932ENSMUST00000146059
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062658 N/A 6.979±0.00 N/A 6.844±0.00 5.869±0.39 4.291±0.81 N/A N/A 2.854±0.64 N/A N/A 6.904±0.00 1.591±0.32 N/A
ENSMUST00000110633 N/A N/A 15.390±2.08 26.472±0.00 N/A N/A 7.440±0.23 N/A 6.216±0.49 N/A N/A 26.029±1.63 5.539±1.52 N/A
ENSMUST00000110634 14.045±3.44 14.196±5.30 12.763±2.45 18.859±5.23 9.958±1.49 7.423±0.96 12.638±2.31 13.683±2.21 4.147±0.75 16.787±1.07 6.561±0.66 15.732±3.16 3.596±1.88 3.436±0.00
ENSMUST00000110635 N/A N/A N/A N/A N/A N/A N/A N/A 3.636±0.00 N/A N/A N/A N/A N/A
ENSMUST00000110636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.307±0.37 N/A N/A
ENSMUST00000110637 5.840±0.24 N/A 15.686±2.08 24.954±0.00 6.686±0.00 N/A 5.842±1.21 4.796±0.51 5.065±1.90 N/A 7.076±1.42 11.325±0.43 4.895±2.27 N/A
ENSMUST00000110638 7.186±2.69 9.804±3.44 9.933±1.98 10.951±5.32 6.224±2.17 4.521±1.33 6.944±2.70 7.989±1.21 2.672±0.90 12.964±1.35 5.049±1.94 6.538±0.96 N/A 3.625±0.00
ENSMUST00000137813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 50.439±3.52
ENSMUST00000137932 N/A N/A 6.674±0.99 12.679±0.00 N/A N/A N/A N/A 2.106±0.00 5.201±0.00 N/A 6.441±0.00 N/A N/A
ENSMUST00000146059 N/A N/A N/A 264.965±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 59.723±8.53 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002P8 CIL_0002P8_0002 CGP 13:9276528-9765321
CIL_0007OC CIL_0007OC_0002 UCNEbase 13:9668478-9686485

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003714 IMP transcription corepressor activity
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0034243 IMP regulation of transcription elongation from RNA polymerase II promoter
GO:0035064 IDA methylated histone binding
GO:0042393 IPI histone binding
GO:0043124 IEA negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046329 IEA negative regulation of JNK cascade
GO:2001237 IEA negative regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057249 zmynd11 zinc finger, MYND domain containing 11 protein_coding Danio_rerio
ENSG00000015171 ZMYND11 zinc finger, MYND-type containing 11 protein_coding Homo_sapiens

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