C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002WF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000090301-ENSDARG00000090297 CGP 7955 11:37293331-37330605
GeneTranscriptPositionBiotype
ENSDARG00000090297 (ldlrad2)
low density lipoprotein receptor class A domain containing 2 		ENSDART00000128245 (ldlrad2-001) 37318270-37330605 protein_coding
ENSDARG00000096865 (si:ch211-11c3.1)
si:ch211-11c3.1 		ENSDART00000156166 (si:ch211-11c3.1-001) 37325351-37527950 antisense
CIL_0002WF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000090686-ENSG00000187942 CGP 9606 1:21678298-21825221
GeneTranscriptPositionBiotype
ENSG00000090686 (USP48)
ubiquitin specific peptidase 48 		ENST00000308271 (USP48-001) 21678579-21783606 protein_coding
ENST00000374730 (USP48-012) 21728612-21748191 nonsense_mediated_decay
ENST00000374732 (USP48-002) 21678903-21725119 protein_coding
ENST00000400301 (USP48-201) 21678298-21783195 protein_coding
ENST00000421625 (USP48-006) 21727851-21783606 protein_coding
ENST00000464577 (USP48-003) 21685892-21704615 retained_intron
ENST00000471752 (USP48-008) 21715124-21721146 retained_intron
ENST00000479177 (USP48-007) 21679199-21681252 processed_transcript
ENST00000487880 (USP48-016) 21721036-21726570 processed_transcript
ENST00000489108 (USP48-005) 21757461-21782943 processed_transcript
ENST00000526044 (USP48-013) 21723898-21732836 protein_coding
ENST00000527823 (USP48-011) 21753007-21782020 protein_coding
ENST00000529637 (USP48-009) 21679367-21782991 protein_coding
ENST00000532737 (USP48-010) 21753035-21783226 protein_coding
ENST00000534705 (USP48-014) 21723972-21732826 protein_coding
ENSG00000231978 (RP11-132G19.3)
 ENST00000434488 (RP11-132G19.3-001) 21768269-21768575 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002WF_0001ENSDARG00000090297ENSDART00000128245ENSDARG00000096865ENSDART00000156166CIL_0002WF_0002ENSG00000090686ENST00000308271ENST00000374730ENST00000374732ENST00000400301ENST00000421625ENST00000464577ENST00000471752ENST00000479177ENST00000487880ENST00000489108ENST00000526044ENST00000527823ENST00000529637ENST00000532737ENST00000534705ENSG00000231978ENST00000434488
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002WF_0001ENSDARG00000090297ENSDART00000128245ENSDARG00000096865ENSDART00000156166CIL_0002WF_0002ENSG00000090686ENST00000308271ENST00000374732ENST00000421625ENST00000471752ENST00000526044ENST00000529637ENSG00000231978ENST00000434488
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000090297 ENSDART00000128245 N/A N/A N/A 5.270±2.29 N/A N/A N/A 0.144±0.00 N/A N/A 0.281±0.00 N/A N/A N/A
ENSDARG00000096865 ENSDART00000156166 N/A N/A N/A 2.459±0.00 N/A N/A N/A 0.173±0.15 N/A N/A 0.508±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000090686 ENST00000308271 2.481±0.00 N/A N/A 1.853±0.66 3.671±0.86 3.178±1.83 2.673±0.00 2.733±0.46 1.846±0.39 1.981±0.60 1.216±0.89 3.874±1.15 5.766±1.83 5.679±0.09
ENST00000374730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000374732 1.744±0.00 5.074±0.00 2.415±0.00 2.031±0.14 1.502±0.00 N/A 0.781±0.00 1.965±0.00 N/A 1.319±0.00 0.436±0.00 6.537±0.00 N/A 5.355±0.00
ENST00000400301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421625 N/A N/A 1.863±0.00 N/A 3.589±0.00 N/A 1.465±0.40 N/A 1.421±0.57 4.523±0.00 N/A 3.080±0.00 N/A 3.054±0.00
ENST00000464577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.551±0.00 N/A N/A N/A
ENST00000479177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526044 N/A N/A 7.402±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529637 3.983±0.00 6.033±0.00 N/A 3.257±0.70 4.449±0.00 4.412±1.99 2.540±2.00 5.312±0.00 1.429±0.11 1.554±0.16 1.504±1.01 2.022±0.00 1.818±0.29 5.646±0.00
ENST00000532737 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000231978 ENST00000434488 N/A 0.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.177±0.04

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