C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 48
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000090686 USP48 9606 - 1:21678298-21783606 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000308271 USP48-001 21678579-21783606 protein_coding
  ENST00000374730 USP48-012 21728612-21748191 nonsense_mediated_decay
  ENST00000374732 USP48-002 21678903-21725119 protein_coding
  ENST00000400301 USP48-201 21678298-21783195 protein_coding
  ENST00000421625 USP48-006 21727851-21783606 protein_coding
  ENST00000464577 USP48-003 21685892-21704615 retained_intron
  ENST00000471752 USP48-008 21715124-21721146 retained_intron
  ENST00000479177 USP48-007 21679199-21681252 processed_transcript
  ENST00000487880 USP48-016 21721036-21726570 processed_transcript
  ENST00000489108 USP48-005 21757461-21782943 processed_transcript
  ENST00000526044 USP48-013 21723898-21732836 protein_coding
  ENST00000527823 USP48-011 21753007-21782020 protein_coding
  ENST00000529637 USP48-009 21679367-21782991 protein_coding
  ENST00000532737 USP48-010 21753035-21783226 protein_coding
  ENST00000534705 USP48-014 21723972-21732826 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308271ENST00000374732ENST00000421625ENST00000471752ENST00000526044ENST00000529637
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308271 2.481±0.00 N/A N/A 1.853±0.66 3.671±0.86 3.178±1.83 2.673±0.00 2.733±0.46 1.846±0.39 1.981±0.60 1.216±0.89 3.874±1.15 5.766±1.83 5.679±0.09
ENST00000374732 1.744±0.00 5.074±0.00 2.415±0.00 2.031±0.14 1.502±0.00 N/A 0.781±0.00 1.965±0.00 N/A 1.319±0.00 0.436±0.00 6.537±0.00 N/A 5.355±0.00
ENST00000421625 N/A N/A 1.863±0.00 N/A 3.589±0.00 N/A 1.465±0.40 N/A 1.421±0.57 4.523±0.00 N/A 3.080±0.00 N/A 3.054±0.00
ENST00000471752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.551±0.00 N/A N/A N/A
ENST00000526044 N/A N/A 7.402±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529637 3.983±0.00 6.033±0.00 N/A 3.257±0.70 4.449±0.00 4.412±1.99 2.540±2.00 5.312±0.00 1.429±0.11 1.554±0.16 1.504±1.01 2.022±0.00 1.818±0.29 5.646±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WF CIL_0002WF_0002 CGP 1:21678298-21825221

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008152 IEA metabolic process
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090301 usp48 ubiquitin specific peptidase 48 protein_coding Danio_rerio
ENSMUSG00000043411 Usp48 ubiquitin specific peptidase 48 protein_coding Mus_musculus

Loading