C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 48
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000529637 USP48-009 ENSG00000090686 9606 - 1:21679367-21782991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000529637
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000529637 3.983±0.00 6.033±0.00 3.257±0.70 4.449±0.00 4.412±1.99 2.540±2.00 5.312±0.00 1.429±0.11 1.554±0.16 1.504±1.01 2.022±0.00 1.818±0.29 5.646±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WF CIL_0002WF_0002 CGP 1:21678298-21825221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008152 IEA metabolic process
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105840 Usp48-002 protein_coding Mus_musculus 0 2302
ENSMUST00000055131 Usp48-001 protein_coding Mus_musculus 0 2296
ENSMUST00000105839 Usp48-003 protein_coding Mus_musculus 0 2187
ENSMUST00000141628 Usp48-012 protein_coding Mus_musculus 0 813
ENSMUST00000153100 Usp48-005 protein_coding Mus_musculus 0 531
ENSMUST00000105838 Usp48-006 protein_coding Mus_musculus 0 508
ENSMUST00000105837 Usp48-004 protein_coding Mus_musculus 0 488
ENSMUST00000152985 Usp48-017 processed_transcript Mus_musculus 0 422
ENSMUST00000141426 Usp48-009 protein_coding Mus_musculus 0 363
ENSMUST00000138599 Usp48-007 processed_transcript Mus_musculus 0 348
ENSMUST00000151807 Usp48-015 protein_coding Mus_musculus 0 324
ENSMUST00000157012 Usp48-014 protein_coding Mus_musculus 0 241
ENSMUST00000153869 Usp48-013 protein_coding Mus_musculus 0 233
ENSMUST00000154395 Usp48-008 processed_transcript Mus_musculus 0 222

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