C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000376_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147206-ENSG00000102409 CGP 9606 X:103075810-103217246
GeneTranscriptPositionBiotype
ENSG00000102409 (BEX4)
brain expressed, X-linked 4
ENST00000372691 (BEX4-002) 103215124-103217099 protein_coding
ENST00000372695 (BEX4-001) 103215092-103217246 protein_coding
ENSG00000147206 (NXF3)
nuclear RNA export factor 3
ENST00000395065 (NXF3-001) 103075810-103093125 protein_coding
ENST00000427570 (NXF3-002) 103077735-103083672 protein_coding
ENST00000460791 (NXF3-004) 103082096-103083480 retained_intron
ENST00000468528 (NXF3-007) 103076276-103079727 retained_intron
ENST00000470724 (NXF3-008) 103077675-103080148 retained_intron
ENST00000494300 (NXF3-006) 103079383-103080734 retained_intron
ENST00000497850 (NXF3-003) 103075824-103081735 retained_intron
ENSG00000226241 (LL0XNC01-221F2.2)
ENST00000440243 (LL0XNC01-221F2.2-001) 103087198-103089277 processed_pseudogene
ENSG00000233071 (RP4-635G19.1)
ENST00000421048 (RP4-635G19.1-001) 103206010-103206899 processed_pseudogene
CIL_000376_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000057000-ENSMUSG00000047844 CGP 10090 X:136072099-136140443
GeneTranscriptPositionBiotype
ENSMUSG00000047844 (Bex4)
brain expressed gene 4
ENSMUST00000116527 (Bex4-001) 136138996-136140443 protein_coding
ENSMUSG00000057000 (Nxf3)
nuclear RNA export factor 3
ENSMUST00000080929 (Nxf3-001) 136072099-136085255 protein_coding
ENSMUST00000138878 (Nxf3-002) 136079613-136085242 protein_coding
ENSMUSG00000087553 (5730412P04Rik)
RIKEN cDNA 5730412P04 gene
ENSMUST00000147100 (5730412P04Rik-001) 136104603-136115420 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000376_0001ENSG00000102409ENST00000372691ENST00000372695ENSG00000147206ENST00000395065ENST00000427570ENST00000460791ENST00000468528ENST00000470724ENST00000494300ENST00000497850ENSG00000226241ENST00000440243ENSG00000233071ENST00000421048CIL_000376_0002ENSMUSG00000047844ENSMUST00000116527ENSMUSG00000057000ENSMUST00000080929ENSMUST00000138878ENSMUSG00000087553ENSMUST00000147100
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000376_0001ENSG00000102409ENST00000372691ENST00000372695ENSG00000147206ENST00000395065ENST00000427570ENST00000460791ENST00000468528ENST00000470724ENST00000494300ENST00000497850ENSG00000226241ENST00000440243ENSG00000233071ENST00000421048CIL_000376_0002ENSMUSG00000047844ENSMUST00000116527ENSMUSG00000057000ENSMUST00000080929ENSMUST00000138878ENSMUSG00000087553ENSMUST00000147100
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102409 ENST00000372691 5.580±0.00 10.045±0.00 N/A 81.544±0.00 6.871±0.00 13.675±0.00 12.849±0.00 18.436±0.00 1.741±0.00 7.107±6.16 0.941±0.00 3.078±2.11 N/A 16.396±0.00
ENST00000372695 6.540±0.00 8.737±0.00 5.776±0.00 44.322±4.67 4.145±2.14 6.736±4.17 3.590±2.63 8.531±7.81 2.405±1.89 5.674±2.82 0.451±0.38 21.541±15.70 47.024±11.17 27.328±13.08
ENSG00000147206 ENST00000395065 N/A N/A N/A N/A N/A N/A 0.026±0.00 0.104±0.06 0.095±0.00 1.163±0.92 N/A 0.588±0.55 0.051±0.02 7.531±2.33
ENST00000427570 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A 0.191±0.00 N/A N/A N/A N/A N/A
ENST00000460791 N/A N/A N/A 0.030±0.00 0.075±0.00 N/A 0.050±0.00 N/A N/A N/A N/A 0.135±0.00 N/A N/A
ENST00000468528 N/A 0.173±0.00 N/A N/A N/A N/A N/A 0.237±0.00 N/A N/A 0.125±0.00 0.096±0.00 0.259±0.00 6.226±0.00
ENST00000470724 N/A 0.030±0.00 N/A 0.020±0.00 0.174±0.00 N/A N/A N/A N/A N/A 0.126±0.00 N/A 0.039±0.00 N/A
ENST00000494300 N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A 0.294±0.00 N/A N/A 0.115±0.06 0.103±0.00 N/A
ENST00000497850 N/A 0.028±0.00 N/A 0.043±0.00 N/A N/A 0.059±0.00 0.041±0.00 N/A N/A N/A 0.388±0.36 N/A 5.524±0.00
ENSG00000226241 ENST00000440243 N/A N/A 0.094±0.00 N/A 0.050±0.05 N/A N/A N/A N/A N/A N/A 0.007±0.00 0.015±0.00 0.091±0.00
ENSG00000233071 ENST00000421048 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A 0.060±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000047844 ENSMUST00000116527 0.062±0.00 0.170±0.00 2.183±0.47 22.304±3.27 0.185±0.00 0.256±0.18 0.235±0.09 4.729±1.60 61.306±45.27 6.059±0.43 0.060±0.01 36.332±57.55 63.850±66.38 13.078±11.22
ENSMUSG00000057000 ENSMUST00000080929 0.029±0.01 0.056±0.00 0.028±0.01 0.026±0.01 N/A N/A 0.024±0.00 0.017±0.01 0.321±0.07 0.040±0.03 N/A 0.367±0.17 0.046±0.02 12.381±9.62
ENSMUST00000138878 0.089±0.00 N/A N/A N/A N/A N/A 0.110±0.04 N/A N/A N/A N/A 0.616±0.25 0.126±0.00 3.647±0.00
ENSMUSG00000087553 ENSMUST00000147100 N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.094±0.02

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